Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

49039159 .. 49040634

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCCCAAGCGACGTAAACCGAGACTGGACGGAACTTCCGGCCGTCATTACGGCGTCGATACTGTCACGTCTTGGAGACATTGAGTCCTTGACGGTGGCTGAGATGGTATGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAACAACCATACAAGCTTCATGTTCGGGCCGACGTTGAGTTACGATATAGTGAAGATGTGCCGCCGTGCCATACACCGTAGCTCCGGTAGTTTTGTCTACATCAACGTCGACTACTTTTGCGACAATGAACTGTTAAAATTCTTTGTTGTCATTACCATTAGACTAAAAGGTAGACCACTAATCAACCCAGATTTCATAACTAGAGGTCACTGGTCTGGATTGTCATTCATAGACCGGTTGAGAGTATGTAACCGATGTATAAGGAAATTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

148

Amino Acids

17.3

Weight (kDa)

9.03

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 56	1.2e-11	F-box-like
F-box	PF00646	10 - 52	2.3e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	267, 279, 343
AciI	CCGC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	308, 437
AcyI	GRCGYC	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	443
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	2 cut(s)	71, 120
AluBI	AGCT	2 cut(s)	186, 252
AluI	AGCT	2 cut(s)	186, 252
Alw26I	GTCTC	2 cut(s)	18, 72
AoxI	GGCC	3 cut(s)	3, 42, 197
ApoI	RAATTY	2 cut(s)	308, 437
AsiGI	ACCGGT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	4, 197
BccI	CCATC	2 cut(s)	100, 167
BceAI	ACGGC	3 cut(s)	29, 69, 219
BcoDI	GTCTC	2 cut(s)	18, 72
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	2 cut(s)	71, 120
BmgT120I	GGNCC	2 cut(s)	4, 197
BmiI	GGNNCC	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	254, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	32, 386
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	32, 386
BseX3I	CGGCCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	5, 44, 199
BshTI	ACCGGT	1 cut(s)	405
BsiEI	CGRYCG	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	41, 255, 406
BsmAI	GTCTC	2 cut(s)	18, 72
BsnI	GGCC	3 cut(s)	5, 44, 199
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	3 cut(s)	5, 44, 199
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	32, 386
BssAI	RCCGGY	1 cut(s)	405
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	4 cut(s)	66, 97, 248, 303
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	18, 72
BstMCI	CGRYCG	1 cut(s)	45
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	5, 44, 199
BtrI	CACGTC	2 cut(s)	71, 120
BtsIMutI	CAGTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	4, 197
CseI	GACGC	1 cut(s)	45
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	2 cut(s)	169, 190
CviJI	RGCY	6 cut(s)	5, 44, 101, 186, 199, 252
CviKI_1	RGCY	6 cut(s)	5, 44, 101, 186, 199, 252
DdeI	CTNAG	1 cut(s)	102
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	42
FaeI	CATG	2 cut(s)	172, 193
FatI	CATG	2 cut(s)	168, 189
FblI	GTMKAC	3 cut(s)	267, 279, 343
Fnu4HI	GCNGC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	5, 44, 199
HapII	CCGG	3 cut(s)	41, 255, 406
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	172, 193
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	41, 255, 406
Hpy166II	GTNNAC	4 cut(s)	19, 268, 280, 344
Hpy188III	TCNNGA	2 cut(s)	169, 387
Hpy8I	GTNNAC	4 cut(s)	19, 268, 280, 344
Hpy99I	CGWCG	4 cut(s)	17, 61, 205, 281
HpyCH4III	ACNGT	4 cut(s)	66, 97, 248, 303
HpyCH4IV	ACGT	5 cut(s)	15, 70, 119, 203, 276
HpyCH4V	TGCA	2 cut(s)	114, 135
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	5 cut(s)	15, 70, 119, 203, 276
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	172, 193
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	13, 54, 268, 367, 372, 372, 419
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	5 cut(s)	15, 70, 119, 203, 276
MaeIII	GTNAC	4 cut(s)	66, 209, 377, 419
MboII	GAAGA	1 cut(s)	235
MluCI	AATT	2 cut(s)	308, 437
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	305
MspI	CCGG	3 cut(s)	41, 255, 406
NlaIII	CATG	2 cut(s)	172, 193
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	66, 377
PagI	TCATGA	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 197
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	4, 197
SchI	GAGTC	1 cut(s)	95
SetI	ASST	9 cut(s)	18, 73, 122, 188, 206, 254, 279, 343, 379
Sse9I	AATT	2 cut(s)	308, 437
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	372
TaaI	ACNGT	4 cut(s)	66, 97, 248, 303
TaiI	ACGT	5 cut(s)	18, 73, 122, 206, 279
TaqI	TCGA	3 cut(s)	59, 162, 279
TasI	AATT	2 cut(s)	308, 437
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	2 cut(s)	66, 377
Tsp45I	GTSAC	2 cut(s)	66, 377
TspDTI	ATGAA	6 cut(s)	157, 178, 185, 312, 355, 388
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	308, 437
XmiI	GTMKAC	3 cut(s)	267, 279, 343
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.