Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

34153353 .. 34154589

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG222400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAGCAACCATACAAAGTTCATGTTCGGGCCGCCGTTGCGTTACGATATAGTGAAGGTGTGCCGCCGCGCCATACATCGTAGCTCTGCTTTGAGACTTCCAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAGTAAAGCTCTACAAGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGGAACCATGCATGGTTTACTCCTTCTTGAGATCCGTTGGAATGAGCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGCGTAAAAACCTGAGATATATGAGCACAGATTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATCGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACCATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

191

Amino Acids

22.21

Weight (kDa)

9.17

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AccII	CGCG	2 cut(s)	132, 516
AciI	CCGC	5 cut(s)	95, 127, 130, 514, 516
AclWI	GGATC	3 cut(s)	352, 418, 521
AcsI	RAATTY	3 cut(s)	197, 257, 550
AgsI	TTSAA	4 cut(s)	247, 256, 491, 550
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	147, 212, 373
AluI	AGCT	3 cut(s)	147, 212, 373
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	151, 386
AlwI	GGATC	3 cut(s)	352, 418, 521
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	92, 517
ApeKI	GCWGC	2 cut(s)	231, 234
ApoI	RAATTY	3 cut(s)	197, 257, 550
Asp700I	GAANNNNTTC	2 cut(s)	251, 283
AspLEI	GCGC	4 cut(s)	51, 134, 231, 438
AspS9I	GGNCC	2 cut(s)	92, 518
AvaI	CYCGRG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	218, 221
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	151, 386
BfaI	CTAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	6 cut(s)	95, 127, 130, 232, 235, 517
BlsI	GCNGC	6 cut(s)	96, 128, 131, 233, 236, 518
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	92, 518
BmiI	GGNNCC	2 cut(s)	331, 512
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	164, 204
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	164, 204
BseXI	GCAGC	2 cut(s)	218, 221
Bsh1236I	CGCG	2 cut(s)	132, 516
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	94, 519
BshVI	ATCGAT	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	151, 386
BsnI	GGCC	2 cut(s)	94, 519
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	357, 423, 522, 526
BspACI	CCGC	5 cut(s)	95, 127, 130, 514, 516
BspANI	GGCC	2 cut(s)	94, 519
BspCNI	CTCAG	1 cut(s)	444
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	2 cut(s)	132, 516
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	331, 512
BspPI	GGATC	3 cut(s)	352, 418, 521
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	164, 204
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	357, 423, 522, 526
Bst2UI	CCWGG	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	2 cut(s)	132, 516
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	4 cut(s)	51, 134, 231, 438
BstKTI	GATC	4 cut(s)	360, 426, 525, 529
BstMAI	GTCTC	2 cut(s)	151, 386
BstMBI	GATC	4 cut(s)	357, 423, 522, 526
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstUI	CGCG	2 cut(s)	132, 516
BstV1I	GCAGC	2 cut(s)	218, 221
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	357, 423
BstYI	RGATCY	2 cut(s)	357, 423
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	94, 519
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	4 cut(s)	51, 134, 231, 438
Cfr13I	GGNCC	2 cut(s)	92, 518
Cfr42I	CCGCGG	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	525
CviAII	CATG	5 cut(s)	64, 85, 334, 338, 567
CviJI	RGCY	7 cut(s)	94, 147, 212, 373, 387, 511, 519
CviKI_1	RGCY	7 cut(s)	94, 147, 212, 373, 387, 511, 519
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	4 cut(s)	359, 425, 524, 528
DpnII	GATC	4 cut(s)	357, 423, 522, 526
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	5 cut(s)	67, 88, 337, 341, 570
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	5 cut(s)	63, 84, 333, 337, 566
Fnu4HI	GCNGC	6 cut(s)	95, 127, 130, 232, 235, 517
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	6 cut(s)	95, 127, 130, 232, 235, 517
FspBI	CTAG	1 cut(s)	534
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	4 cut(s)	50, 133, 230, 437
GluI	GCNGC	6 cut(s)	95, 127, 130, 232, 235, 517
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	94, 519
HhaI	GCGC	4 cut(s)	51, 134, 231, 438
Hin1II	CATG	5 cut(s)	67, 88, 337, 341, 570
Hin6I	GCGC	4 cut(s)	49, 132, 229, 436
HinP1I	GCGC	4 cut(s)	49, 132, 229, 436
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	5 cut(s)	64, 327, 353, 401, 421
Hpy8I	GTNNAC	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	112, 359
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	6 cut(s)	9, 30, 195, 314, 337, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	67, 88, 337, 341, 570
HspAI	GCGC	4 cut(s)	49, 132, 229, 436
KspI	CCGCGG	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	357, 423, 522, 526
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	6 cut(s)	177, 217, 274, 301, 312, 464
Lsp1109I	GCAGC	2 cut(s)	218, 221
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	4 cut(s)	359, 425, 524, 528
MboI	GATC	4 cut(s)	357, 423, 522, 526
MboII	GAAGA	2 cut(s)	276, 288
MflI	RGATCY	2 cut(s)	357, 423
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	5 cut(s)	197, 257, 396, 495, 550
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	166, 249, 301, 423, 541
Mph1103I	ATGCAT	1 cut(s)	339
MroXI	GAANNNNTTC	2 cut(s)	251, 283
MseI	TTAA	3 cut(s)	261, 498, 574
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	132, 516
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	4 cut(s)	357, 423, 522, 526
NlaIII	CATG	5 cut(s)	67, 88, 337, 341, 570
NlaIV	GGNNCC	2 cut(s)	331, 512
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	419
PagI	TCATGA	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	251, 283
PkrI	GCNGC	6 cut(s)	96, 128, 131, 233, 236, 518
Ple19I	CGATCG	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	331, 512
PspPI	GGNCC	2 cut(s)	92, 518
PsuI	RGATCY	2 cut(s)	357, 423
PvuI	CGATCG	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	188
SacII	CCGCGG	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	261, 498, 574
SatI	GCNGC	6 cut(s)	95, 127, 130, 232, 235, 517
Sau3AI	GATC	4 cut(s)	357, 423, 522, 526
Sau96I	GGNCC	2 cut(s)	92, 518
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	6 cut(s)	17, 123, 149, 214, 375, 453
SfaNI	GCATC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	419
Sfr303I	CCGCGG	1 cut(s)	517
SgrBI	CCGCGG	1 cut(s)	517
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	353, 419
SmoI	CTYRAG	2 cut(s)	353, 419
Sse9I	AATT	5 cut(s)	197, 257, 396, 495, 550
SsiI	CCGC	5 cut(s)	95, 127, 130, 514, 516
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	57, 188, 420, 525
TasI	AATT	5 cut(s)	197, 257, 396, 495, 550
TauI	GCSGC	4 cut(s)	97, 129, 132, 519
Tru1I	TTAA	3 cut(s)	261, 498, 574
Tru9I	TTAA	3 cut(s)	261, 498, 574
TseI	GCWGC	2 cut(s)	231, 234
TspDTI	ATGAA	2 cut(s)	52, 73
TspGWI	ACGGA	1 cut(s)	350
XapI	RAATTY	3 cut(s)	197, 257, 550
XhoI	CTCGAG	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	251, 283
XspI	CTAG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.