RchiOBHm_Chr1g0353931

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011591
Physical Location & Seq
Reverse (-)
47111567 .. 47115852
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57954

Sequence Viewer

Length: 912 bp
ATGGCCCCAAGAGTTGGAACCCACGTAAAACGACGCCTGAGCCGCCGAGACTGGACGGAACTTTCTGGCGTCGTTACTGGGTCGATACTGTCATGTCTTGGAGACATTGAGTCCCTGACGGTGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGTTGTGGCGCACCATCGACTTTATGAGCAACCATACAAAGTTCATGTTCAGGCCGCTATTGCATTACGATATAGTGAAGATGTGCCGCCGCACCATACACCGTAGCTCCGGTATTTTTGTCTATGTCAACGTCGACTACTTTTGCAACAATGAACTGTTAAAGTATATCACTAACAATTTGGTGAGAATAGCATTTGTTGCTGATGGGAGTAGCTTTTGGAGGTGGCCGAGAATCTCATCAGATTTAGTTGGATTAATTAGGCACCTCAGTTTGCTCAATTGTGGCATTATAACTGATGAGGTGTTGTGTGAAGCAGCTTTGAGACTTCCAGTTTTGGAGGAACTGGACATTTCGATGTGCAAATTCTCCAGTAAAGCTCTTCAAGTAGTTAGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGTGACGAGGATGCAGTTGCTATATCGGGAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGTGTAAAAACCTGAGATATATGAGCACAGATTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCAGCGGCCCAATCGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACTATGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

303

Amino Acids

34.87

Weight (kDa)

8.83

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 28 - 64 7.6e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
Acc16I TGCGCA 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 303
AciI CCGC 5 cut(s) 43, 224, 256, 259, 852
AclWI GGATC 3 cut(s) 688, 754, 857
AcoI YGGCCR 1 cut(s) 395
AcsI RAATTY 3 cut(s) 533, 593, 886
AcyI GRCGYC 2 cut(s) 34, 69
AfiI CCNNNNNNNGG 2 cut(s) 14, 121
AgsI TTSAA 5 cut(s) 554, 583, 592, 827, 886
AhdI GACNNNNNGTC 1 cut(s) 109
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 5 cut(s) 276, 384, 488, 548, 709
AluI AGCT 5 cut(s) 276, 384, 488, 548, 709
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 4 cut(s) 42, 96, 487, 722
AlwI GGATC 3 cut(s) 688, 754, 857
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 4 cut(s) 3, 221, 395, 853
ApeKI GCWGC 3 cut(s) 485, 567, 570
ApoI RAATTY 3 cut(s) 533, 593, 886
AseI ATTAAT 1 cut(s) 425
Asp700I GAANNNNTTC 2 cut(s) 587, 619
AspLEI GCGC 3 cut(s) 180, 567, 774
AspS9I GGNCC 2 cut(s) 4, 854
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 755
BanI GGYRCC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 3 cut(s) 497, 554, 557
BccI CCATC 3 cut(s) 124, 191, 368
BciT130I CCWGG 1 cut(s) 625
BcoDI GTCTC 4 cut(s) 42, 96, 487, 722
BfaI CTAG 1 cut(s) 870
BfoI RGCGCY 1 cut(s) 568
BisI GCNGC 8 cut(s) 43, 224, 256, 259, 486, 568, 571, 853
BlpI GCTNAGC 1 cut(s) 848
BlsI GCNGC 8 cut(s) 44, 225, 257, 260, 487, 569, 572, 854
Bme1390I CCNGG 1 cut(s) 625
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 755
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 4, 854
BmiI GGNNCC 4 cut(s) 6, 19, 434, 667
BmrFI CCNGG 1 cut(s) 625
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 710
Bsa29I ATCGAT 1 cut(s) 861
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 34, 69
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 121
Bse1I ACTGG 5 cut(s) 56, 82, 500, 519, 540
Bse3DI GCAATG 1 cut(s) 724
BseBI CCWGG 1 cut(s) 625
BseCI ATCGAT 1 cut(s) 861
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 2 cut(s) 14, 121
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 5 cut(s) 29, 117, 451, 779, 862
BseNI ACTGG 5 cut(s) 56, 82, 500, 519, 540
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 3 cut(s) 497, 554, 557
BshFI GGCC 4 cut(s) 5, 223, 397, 855
BshNI GGYRCC 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 803
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 14, 121
BsmAI GTCTC 4 cut(s) 42, 96, 487, 722
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 4 cut(s) 5, 223, 397, 855
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 1 cut(s) 803
Bsp143I GATC 3 cut(s) 693, 759, 862
Bsp1720I GCTNAGC 1 cut(s) 848
BspACI CCGC 5 cut(s) 43, 224, 256, 259, 852
BspANI GGCC 4 cut(s) 5, 223, 397, 855
BspCNI CTCAG 5 cut(s) 30, 118, 450, 780, 861
BspDI ATCGAT 1 cut(s) 861
BspLI GGNNCC 4 cut(s) 6, 19, 434, 667
BspPI GGATC 3 cut(s) 688, 754, 857
BspQI GCTCTTC 1 cut(s) 555
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 724
BsrI ACTGG 5 cut(s) 56, 82, 500, 519, 540
BssMI GATC 3 cut(s) 693, 759, 862
BssNI GRCGYC 2 cut(s) 34, 69
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 4 cut(s) 90, 121, 272, 327
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 2 cut(s) 34, 69
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 38, 126, 437, 788, 848
BstF5I GGATG 1 cut(s) 652
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 3 cut(s) 180, 567, 774
BstKTI GATC 3 cut(s) 696, 762, 865
BstMAI GTCTC 4 cut(s) 42, 96, 487, 722
BstMBI GATC 3 cut(s) 693, 759, 862
BstMWI GCNNNNNNNGC 3 cut(s) 42, 229, 368
BstNI CCWGG 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 497, 554, 557
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 2 cut(s) 693, 759
BstYI RGATCY 2 cut(s) 693, 759
Bsu15I ATCGAT 1 cut(s) 861
BsuRI GGCC 4 cut(s) 5, 223, 397, 855
BsuTUI ATCGAT 1 cut(s) 861
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 652
CfoI GCGC 3 cut(s) 180, 567, 774
Cfr13I GGNCC 2 cut(s) 4, 854
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 2 cut(s) 42, 58
CviAII CATG 4 cut(s) 93, 214, 670, 674
DdeI CTNAG 5 cut(s) 38, 126, 437, 788, 848
DpnI GATC 3 cut(s) 695, 761, 864
DpnII GATC 3 cut(s) 693, 759, 862
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 675
FaeI CATG 4 cut(s) 96, 217, 673, 677
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 1 cut(s) 97
FatI CATG 4 cut(s) 92, 213, 669, 673
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 8 cut(s) 43, 224, 256, 259, 486, 568, 571, 853
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 8 cut(s) 43, 224, 256, 259, 486, 568, 571, 853
FspBI CTAG 1 cut(s) 870
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 3 cut(s) 179, 566, 773
GluI GCNGC 8 cut(s) 43, 224, 256, 259, 486, 568, 571, 853
GsuI CTGGAG 1 cut(s) 523
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 4 cut(s) 5, 223, 397, 855
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 42, 58
HhaI GCGC 3 cut(s) 180, 567, 774
Hin1I GRCGYC 2 cut(s) 34, 69
Hin1II CATG 4 cut(s) 96, 217, 673, 677
Hin6I GCGC 3 cut(s) 178, 565, 772
HinP1I GCGC 3 cut(s) 178, 565, 772
HincII GTYRAC 2 cut(s) 298, 304
HindII GTYRAC 2 cut(s) 298, 304
HinfI GANTC 2 cut(s) 110, 402
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 298, 304, 680
Hpy188I TCNGA 2 cut(s) 412, 880
Hpy188III TCNNGA 3 cut(s) 663, 737, 757
Hpy8I GTNNAC 3 cut(s) 298, 304, 680
Hpy99I CGWCG 3 cut(s) 36, 74, 305
HpyCH4III ACNGT 4 cut(s) 90, 121, 272, 327
HpyCH4IV ACGT 3 cut(s) 24, 143, 300
HpyCH4V TGCA 8 cut(s) 138, 159, 232, 315, 531, 650, 673, 717
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 229, 368
HpyF3I CTNAG 5 cut(s) 38, 126, 437, 788, 848
HpySE526I ACGT 3 cut(s) 24, 143, 300
Hsp92I GRCGYC 2 cut(s) 34, 69
Hsp92II CATG 4 cut(s) 96, 217, 673, 677
HspAI GCGC 3 cut(s) 178, 565, 772
Kzo9I GATC 3 cut(s) 693, 759, 862
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 3 cut(s) 497, 554, 557
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 870
MaeII ACGT 3 cut(s) 24, 143, 300
MaeIII GTNAC 2 cut(s) 73, 638
MalI GATC 3 cut(s) 695, 761, 864
MboI GATC 3 cut(s) 693, 759, 862
MboII GAAGA 4 cut(s) 259, 542, 612, 624
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 693, 759
MhlI GDGCHC 1 cut(s) 803
MluCI AATT 8 cut(s) 346, 426, 448, 533, 593, 732, 831, 886
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 9 cut(s) 384, 446, 463, 502, 585, 637, 695, 759, 877
Mph1103I ATGCAT 1 cut(s) 675
MroXI GAANNNNTTC 2 cut(s) 587, 619
MseI TTAA 5 cut(s) 329, 425, 597, 834, 910
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 852
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 625
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 42, 229, 368
NdeII GATC 3 cut(s) 693, 759, 862
NlaIII CATG 4 cut(s) 96, 217, 673, 677
NlaIV GGNNCC 4 cut(s) 6, 19, 434, 667
NmeAIII GCCGAG 2 cut(s) 71, 423
NmuCI GTSAC 1 cut(s) 638
NsbI TGCGCA 1 cut(s) 773
NsiI ATGCAT 1 cut(s) 675
PaeR7I CTCGAG 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 587, 619
PfeI GAWTC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 8 cut(s) 44, 225, 257, 260, 487, 569, 572, 854
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 425
PsiI TTATAA 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 623
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 4 cut(s) 6, 19, 434, 667
PspPI GGNCC 2 cut(s) 4, 854
PsuI RGATCY 2 cut(s) 693, 759
RseI CAYNNNNRTG 1 cut(s) 524
SalI GTCGAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 5 cut(s) 329, 425, 597, 834, 910
SatI GCNGC 8 cut(s) 43, 224, 256, 259, 486, 568, 571, 853
Sau3AI GATC 3 cut(s) 693, 759, 862
Sau96I GGNCC 2 cut(s) 4, 854
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 625
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 1 cut(s) 637
Sfr274I CTCGAG 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 689, 755
SmoI CTYRAG 2 cut(s) 689, 755
Sse9I AATT 8 cut(s) 346, 426, 448, 533, 593, 732, 831, 886
SsiI CCGC 5 cut(s) 43, 224, 256, 259, 852
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 623
TaaI ACNGT 4 cut(s) 90, 121, 272, 327
TaiI ACGT 3 cut(s) 27, 146, 303
TaqI TCGA 6 cut(s) 83, 186, 303, 524, 756, 861
TasI AATT 8 cut(s) 346, 426, 448, 533, 593, 732, 831, 886
TauI GCSGC 5 cut(s) 45, 226, 258, 261, 855
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 5 cut(s) 329, 425, 597, 834, 910
Tru9I TTAA 5 cut(s) 329, 425, 597, 834, 910
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 3 cut(s) 485, 567, 570
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 2 cut(s) 202, 336
TspGWI ACGGA 2 cut(s) 71, 686
Van91I CCANNNNNTGG 1 cut(s) 14
VspI ATTAAT 1 cut(s) 425
XapI RAATTY 3 cut(s) 533, 593, 886
XhoI CTCGAG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 2 cut(s) 587, 619
XspI CTAG 1 cut(s) 870
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.