Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007658.1

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

7171 .. 8393

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggccccaagagttggaacccacgtaaaacgacgcctgagccgccgagactggacggaacttccgggcgtcgttacggcatcgatactgtcacgtctcggagacatcgagtccctgacggtggctgagatggtgtgcaagacgtggtgtgaaatctgcaaagaccctatgctgtggcgcaccatcgacttcatgagcaaccatacaaagttcatgttcgggccgccgttgcgttacgatatagtgaagatgtgccgccgggccatacaccgtagctccggtagttttgtctatgtcaacgtcgactacttctgcaacaatgaactgttaaagtatatcaccaacagttcagctggatttattagacacctcagtttgttcaattgtggcattataactgatgaggtgttgtgtgaagcagctttgagacttccagttttggaggaacttgacatttcgatgtgcaaattctccagtaaagctctacaagtagttgggcgctgctgcccacttttgaaatcattcaaatttaacaccccgaatggaagaaagtcttccaggcagtattatagcgacgaggatgcagttgctatatcaggaaccatgcatggtttactcctccttgagatccgtaggaatgatctgacttgcaatggcttggagacaattcttgattgttgtcctcaactcgagatccttgatttgcgcaagtgtaaaaacctgagatatatgagcacagatttagaaataagatgtgttgaaagaattaagaagttgtggctccgcggcccgatcgatccctctagtatatcggacttgaatttggtaggcaaaccatgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

281

Amino Acids

32.12

Weight (kDa)

8.75

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	786
AciI	CCGC	5 cut(s)	43, 224, 256, 784, 786
AclWI	GGATC	3 cut(s)	622, 688, 791
AcsI	RAATTY	3 cut(s)	467, 527, 820
AcyI	GRCGYC	2 cut(s)	34, 69
AfiI	CCNNNNNNNGG	2 cut(s)	14, 121
AgsI	TTSAA	5 cut(s)	382, 517, 526, 761, 820
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	2 cut(s)	95, 144
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	276, 353, 422, 482
AluI	AGCT	4 cut(s)	276, 353, 422, 482
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	5 cut(s)	42, 96, 101, 421, 656
AlwI	GGATC	3 cut(s)	622, 688, 791
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	4 cut(s)	3, 221, 261, 787
ApeKI	GCWGC	3 cut(s)	419, 501, 504
ApoI	RAATTY	3 cut(s)	467, 527, 820
Asp700I	GAANNNNTTC	2 cut(s)	521, 553
AspLEI	GCGC	3 cut(s)	180, 501, 708
AspS9I	GGNCC	4 cut(s)	4, 221, 261, 788
AsuC2I	CCSGG	2 cut(s)	66, 260
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	431, 488, 491
BccI	CCATC	2 cut(s)	124, 191
BceAI	ACGGC	2 cut(s)	93, 211
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	66, 260
BcoDI	GTCTC	5 cut(s)	42, 96, 101, 421, 656
BfaI	CTAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	502
BisI	GCNGC	7 cut(s)	43, 224, 256, 420, 502, 505, 787
BlsI	GCNGC	7 cut(s)	44, 225, 257, 421, 503, 506, 788
Bme1390I	CCNGG	3 cut(s)	66, 260, 559
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	689
BmgBI	CACGTC	2 cut(s)	95, 144
BmgT120I	GGNCC	4 cut(s)	4, 221, 261, 788
BmiI	GGNNCC	4 cut(s)	6, 19, 601, 782
BmrFI	CCNGG	3 cut(s)	66, 260, 559
BmsI	GCATC	2 cut(s)	89, 571
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	2 cut(s)	66, 260
Bsa29I	ATCGAT	2 cut(s)	83, 795
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	34, 69
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 121
Bse1I	ACTGG	3 cut(s)	56, 434, 474
Bse3DI	GCAATG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	559
BseCI	ATCGAT	2 cut(s)	83, 795
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	2 cut(s)	14, 121
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	4 cut(s)	29, 117, 385, 713
BseNI	ACTGG	3 cut(s)	56, 434, 474
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	431, 488, 491
Bsh1236I	CGCG	1 cut(s)	786
Bsh1285I	CGRYCG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	5, 223, 263, 789
BshVI	ATCGAT	2 cut(s)	83, 795
BsiEI	CGRYCG	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	737
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	65, 259, 279
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	14, 121
BsmAI	GTCTC	5 cut(s)	42, 96, 101, 421, 656
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	4 cut(s)	5, 223, 263, 789
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	5 cut(s)	627, 640, 693, 792, 796
BspACI	CCGC	5 cut(s)	43, 224, 256, 784, 786
BspANI	GGCC	4 cut(s)	5, 223, 263, 789
BspCNI	CTCAG	4 cut(s)	30, 118, 384, 714
BspDI	ATCGAT	2 cut(s)	83, 795
BspFNI	CGCG	1 cut(s)	786
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	6, 19, 601, 782
BspPI	GGATC	3 cut(s)	622, 688, 791
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	3 cut(s)	56, 434, 474
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	5 cut(s)	627, 640, 693, 792, 796
BssNI	GRCGYC	2 cut(s)	34, 69
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	5 cut(s)	90, 121, 272, 327, 347
BstACI	GRCGYC	2 cut(s)	34, 69
BstBAI	YACGTR	1 cut(s)	25
BstDEI	CTNAG	4 cut(s)	38, 126, 371, 722
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	786
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	3 cut(s)	180, 501, 708
BstKTI	GATC	5 cut(s)	630, 643, 696, 795, 799
BstMAI	GTCTC	5 cut(s)	42, 96, 101, 421, 656
BstMBI	GATC	5 cut(s)	627, 640, 693, 792, 796
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 229
BstNI	CCWGG	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	64, 258, 557
BstUI	CGCG	1 cut(s)	786
BstV1I	GCAGC	3 cut(s)	431, 488, 491
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	2 cut(s)	627, 693
BstYI	RGATCY	2 cut(s)	627, 693
Bsu15I	ATCGAT	2 cut(s)	83, 795
BsuRI	GGCC	4 cut(s)	5, 223, 263, 789
BsuTUI	ATCGAT	2 cut(s)	83, 795
BtgI	CCRYGG	1 cut(s)	784
BtrI	CACGTC	2 cut(s)	95, 144
BtsCI	GGATG	1 cut(s)	586
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	3 cut(s)	180, 501, 708
Cfr13I	GGNCC	4 cut(s)	4, 221, 261, 788
Cfr42I	CCGCGG	1 cut(s)	787
ClaI	ATCGAT	2 cut(s)	83, 795
CseI	GACGC	2 cut(s)	42, 58
CviAII	CATG	5 cut(s)	193, 214, 604, 608, 837
DdeI	CTNAG	4 cut(s)	38, 126, 371, 722
DpnI	GATC	5 cut(s)	629, 642, 695, 794, 798
DpnII	GATC	5 cut(s)	627, 640, 693, 792, 796
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	5 cut(s)	196, 217, 607, 611, 840
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	192, 213, 603, 607, 836
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	7 cut(s)	43, 224, 256, 420, 502, 505, 787
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	7 cut(s)	43, 224, 256, 420, 502, 505, 787
FspBI	CTAG	1 cut(s)	804
FspI	TGCGCA	1 cut(s)	707
GlaI	GCGC	3 cut(s)	179, 500, 707
GluI	GCNGC	7 cut(s)	43, 224, 256, 420, 502, 505, 787
GsuI	CTGGAG	1 cut(s)	457
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	4 cut(s)	5, 223, 263, 789
HapII	CCGG	3 cut(s)	65, 259, 279
HgaI	GACGC	2 cut(s)	42, 58
HhaI	GCGC	3 cut(s)	180, 501, 708
Hin1I	GRCGYC	2 cut(s)	34, 69
Hin1II	CATG	5 cut(s)	196, 217, 607, 611, 840
Hin6I	GCGC	3 cut(s)	178, 499, 706
HinP1I	GCGC	3 cut(s)	178, 499, 706
HincII	GTYRAC	2 cut(s)	298, 304
HindII	GTYRAC	2 cut(s)	298, 304
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	3 cut(s)	65, 259, 279
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	298, 304, 614
Hpy188I	TCNGA	3 cut(s)	101, 645, 814
Hpy188III	TCNNGA	4 cut(s)	193, 597, 671, 691
Hpy8I	GTNNAC	3 cut(s)	298, 304, 614
Hpy99I	CGWCG	4 cut(s)	36, 74, 305, 578
HpyCH4III	ACNGT	5 cut(s)	90, 121, 272, 327, 347
HpyCH4IV	ACGT	4 cut(s)	24, 94, 143, 300
HpyCH4V	TGCA	7 cut(s)	138, 159, 315, 465, 584, 607, 651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 229
HpyF3I	CTNAG	4 cut(s)	38, 126, 371, 722
HpySE526I	ACGT	4 cut(s)	24, 94, 143, 300
Hsp92I	GRCGYC	2 cut(s)	34, 69
Hsp92II	CATG	5 cut(s)	196, 217, 607, 611, 840
HspAI	GCGC	3 cut(s)	178, 499, 706
KspI	CCGCGG	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	627, 640, 693, 792, 796
LmnI	GCTCC	2 cut(s)	281, 786
Lsp1109I	GCAGC	3 cut(s)	431, 488, 491
LweI	GCATC	2 cut(s)	89, 571
MaeI	CTAG	1 cut(s)	804
MaeII	ACGT	4 cut(s)	24, 94, 143, 300
MaeIII	GTNAC	3 cut(s)	73, 90, 233
MalI	GATC	5 cut(s)	629, 642, 695, 794, 798
MboI	GATC	5 cut(s)	627, 640, 693, 792, 796
MboII	GAAGA	3 cut(s)	259, 546, 558
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	2 cut(s)	627, 693
MhlI	GDGCHC	1 cut(s)	737
MluCI	AATT	6 cut(s)	382, 467, 527, 666, 765, 820
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	380, 397, 436, 571, 629, 693, 811
Mph1103I	ATGCAT	1 cut(s)	609
MroXI	GAANNNNTTC	2 cut(s)	521, 553
MseI	TTAA	4 cut(s)	329, 531, 768, 844
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	2 cut(s)	353, 786
MspI	CCGG	3 cut(s)	65, 259, 279
MspR9I	CCNGG	3 cut(s)	66, 260, 559
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	2 cut(s)	42, 229
NciI	CCSGG	2 cut(s)	66, 260
NdeII	GATC	5 cut(s)	627, 640, 693, 792, 796
NlaIII	CATG	5 cut(s)	196, 217, 607, 611, 840
NlaIV	GGNNCC	4 cut(s)	6, 19, 601, 782
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	707
NsiI	ATGCAT	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	689
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	521, 553
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	44, 225, 257, 421, 503, 506, 788
Ple19I	CGATCG	1 cut(s)	795
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	4 cut(s)	6, 19, 601, 782
PspPI	GGNCC	4 cut(s)	4, 221, 261, 788
PsuI	RGATCY	2 cut(s)	627, 693
PvuI	CGATCG	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	787
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	329, 531, 768, 844
SatI	GCNGC	7 cut(s)	43, 224, 256, 420, 502, 505, 787
Sau3AI	GATC	5 cut(s)	627, 640, 693, 792, 796
Sau96I	GGNCC	4 cut(s)	4, 221, 261, 788
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	66, 260, 559
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	2 cut(s)	89, 571
Sfr274I	CTCGAG	1 cut(s)	689
Sfr303I	CCGCGG	1 cut(s)	787
SgrBI	CCGCGG	1 cut(s)	787
SlaI	CTCGAG	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	623, 689
SmoI	CTYRAG	2 cut(s)	623, 689
Sse9I	AATT	6 cut(s)	382, 467, 527, 666, 765, 820
SsiI	CCGC	5 cut(s)	43, 224, 256, 784, 786
SspMI	CTAG	1 cut(s)	804
StyD4I	CCNGG	3 cut(s)	64, 258, 557
TaaI	ACNGT	5 cut(s)	90, 121, 272, 327, 347
TaiI	ACGT	4 cut(s)	27, 97, 146, 303
TaqI	TCGA	7 cut(s)	83, 108, 186, 303, 458, 690, 795
TasI	AATT	6 cut(s)	382, 467, 527, 666, 765, 820
TauI	GCSGC	4 cut(s)	45, 226, 258, 789
Tru1I	TTAA	4 cut(s)	329, 531, 768, 844
Tru9I	TTAA	4 cut(s)	329, 531, 768, 844
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	3 cut(s)	419, 501, 504
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	181, 202, 336
TspGWI	ACGGA	2 cut(s)	71, 620
Van91I	CCANNNNNTGG	1 cut(s)	14
XapI	RAATTY	3 cut(s)	467, 527, 820
XhoI	CTCGAG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	2 cut(s)	521, 553
XspI	CTAG	1 cut(s)	804
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.