Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

47065189 .. 47066418

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCCCAAGCAACGTAAACCGAGACTGGACGGAACTTCCGGCCGTCATTACGGCGTCGATACTGTCACGTCTTGGAGACATTGAGTCCTTGACGGTGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAACAACCATACAAGCTTCATGTTCGGGCCGCCCTTGTGTTACGATATAGTGAAGATGTGCCGCCGTGCCATACACCGTAGCTCCGGTAGTTTTGTCTATATCAACGTCGACTACTTTTGCGACAATGAACTGTTAAAGTATATCACTAACAGTTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTGGCATTATAAATGACGCGGTGTTGTGTCAAGCAGCTTCGAGACTTCGAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAGTATGGCTATACAAATAGTTGGGCTCTGCTGCCCTCGTTTGAAATCATTCAAATTTAACAACCGGAACGGAAGAAGGTCTTCCAGGCAGTATTATAGAAACGAGGATGCAGTTGCTATATCAGCAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGCAATGAGCTGACTTACAATGGCCTGGCGAAAATTCTTGATTGTTGTCCTCAACTTGAGATCCTTGATTTGCGCGAGTGTAAAAACTTGAAACTTATGAGCAGAGATTTGGAAACAAGATGTGTTGAAAGAATTAAGAAGTTGTGGTTCCCGATCGATCCCTCTGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACCATGTCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

275

Amino Acids

31.45

Weight (kDa)

8.33

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 56	3.6e-11	F-box-like
F-box	PF00646	10 - 52	6.8e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	380, 684
AciI	CCGC	3 cut(s)	200, 232, 380
AclWI	GGATC	4 cut(s)	598, 664, 761, 770
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	4 cut(s)	443, 503, 642, 799
AcyI	GRCGYC	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	358, 493, 502, 700, 737, 799
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	2 cut(s)	71, 120
AjnI	CCWGG	2 cut(s)	533, 633
AluBI	AGCT	5 cut(s)	186, 252, 329, 398, 619
AluI	AGCT	5 cut(s)	186, 252, 329, 398, 619
Alw26I	GTCTC	3 cut(s)	18, 72, 397
AlwI	GGATC	4 cut(s)	598, 664, 761, 770
AoxI	GGCC	4 cut(s)	3, 42, 197, 631
ApeKI	GCWGC	2 cut(s)	395, 480
ApoI	RAATTY	4 cut(s)	443, 503, 642, 799
Asp700I	GAANNNNTTC	2 cut(s)	497, 529
AspLEI	GCGC	2 cut(s)	156, 684
AspS9I	GGNCC	2 cut(s)	4, 197
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	2 cut(s)	407, 467
BccI	CCATC	2 cut(s)	100, 167
BceAI	ACGGC	3 cut(s)	29, 69, 219
BciT130I	CCWGG	2 cut(s)	535, 635
BcoDI	GTCTC	3 cut(s)	18, 72, 397
BfaI	CTAG	2 cut(s)	783, 826
BisI	GCNGC	4 cut(s)	200, 232, 396, 481
BlsI	GCNGC	4 cut(s)	201, 233, 397, 482
Bme1390I	CCNGG	2 cut(s)	535, 635
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	2 cut(s)	71, 120
BmgT120I	GGNCC	2 cut(s)	4, 197
BmiI	GGNNCC	2 cut(s)	6, 758
BmrFI	CCNGG	2 cut(s)	535, 635
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	620, 686
Bsa29I	ATCGAT	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	254, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	2 cut(s)	32, 450
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	535, 635
BseCI	ATCGAT	1 cut(s)	765
BseGI	GGATG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	2 cut(s)	93, 361
BseNI	ACTGG	2 cut(s)	32, 450
BseRI	GAGGAG	1 cut(s)	584
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	407, 467
Bsh1236I	CGCG	2 cut(s)	380, 684
Bsh1285I	CGRYCG	2 cut(s)	45, 765
BshFI	GGCC	4 cut(s)	5, 44, 199, 633
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	2 cut(s)	45, 765
BsiSI	CCGG	3 cut(s)	41, 255, 514
BsmAI	GTCTC	3 cut(s)	18, 72, 397
BsnI	GGCC	4 cut(s)	5, 44, 199, 633
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	603, 669, 762, 766, 775
BspACI	CCGC	3 cut(s)	200, 232, 380
BspANI	GGCC	4 cut(s)	5, 44, 199, 633
BspCNI	CTCAG	2 cut(s)	94, 360
BspDI	ATCGAT	1 cut(s)	765
BspFNI	CGCG	2 cut(s)	380, 684
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	6, 758
BspPI	GGATC	4 cut(s)	598, 664, 761, 770
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	32, 450
BssMI	GATC	5 cut(s)	603, 669, 762, 766, 775
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	535, 635
Bst4CI	ACNGT	5 cut(s)	66, 97, 248, 303, 323
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	102, 347
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	2 cut(s)	380, 684
BstHHI	GCGC	2 cut(s)	156, 684
BstKTI	GATC	5 cut(s)	606, 672, 765, 769, 778
BstMAI	GTCTC	3 cut(s)	18, 72, 397
BstMBI	GATC	5 cut(s)	603, 669, 762, 766, 775
BstMCI	CGRYCG	2 cut(s)	45, 765
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	2 cut(s)	535, 635
BstSCI	CCNGG	2 cut(s)	533, 633
BstUI	CGCG	2 cut(s)	380, 684
BstV1I	GCAGC	2 cut(s)	407, 467
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	603, 669
BstYI	RGATCY	2 cut(s)	603, 669
BstZI	CGGCCG	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	5, 44, 199, 633
BsuTUI	ATCGAT	1 cut(s)	765
BtrI	CACGTC	2 cut(s)	71, 120
BtsCI	GGATG	1 cut(s)	562
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	156, 684
Cfr13I	GGNCC	2 cut(s)	4, 197
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	2 cut(s)	45, 386
CviAII	CATG	5 cut(s)	169, 190, 580, 584, 816
DdeI	CTNAG	2 cut(s)	102, 347
DpnI	GATC	5 cut(s)	605, 671, 764, 768, 777
DpnII	GATC	5 cut(s)	603, 669, 762, 766, 775
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	477
Eco52I	CGGCCG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	533, 633
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	5 cut(s)	172, 193, 583, 587, 819
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	5 cut(s)	168, 189, 579, 583, 815
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	200, 232, 396, 481
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	200, 232, 396, 481
FspBI	CTAG	2 cut(s)	783, 826
GlaI	GCGC	2 cut(s)	155, 683
GluI	GCNGC	4 cut(s)	200, 232, 396, 481
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	5, 44, 199, 633
HapII	CCGG	3 cut(s)	41, 255, 514
HgaI	GACGC	2 cut(s)	45, 386
HhaI	GCGC	2 cut(s)	156, 684
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	172, 193, 583, 587, 819
Hin6I	GCGC	2 cut(s)	154, 682
HinP1I	GCGC	2 cut(s)	154, 682
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	41, 255, 514
Hpy166II	GTNNAC	3 cut(s)	19, 280, 590
Hpy188I	TCNGA	2 cut(s)	775, 793
Hpy188III	TCNNGA	4 cut(s)	169, 402, 647, 760
Hpy8I	GTNNAC	3 cut(s)	19, 280, 590
Hpy99I	CGWCG	2 cut(s)	61, 281
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	5 cut(s)	66, 97, 248, 303, 323
HpyCH4IV	ACGT	4 cut(s)	15, 70, 119, 276
HpyCH4V	TGCA	5 cut(s)	114, 135, 441, 560, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	102, 347
HpySE526I	ACGT	4 cut(s)	15, 70, 119, 276
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	172, 193, 583, 587, 819
HspAI	GCGC	2 cut(s)	154, 682
Kzo9I	GATC	5 cut(s)	603, 669, 762, 766, 775
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	407, 467
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	783, 826
MaeII	ACGT	4 cut(s)	15, 70, 119, 276
MaeIII	GTNAC	2 cut(s)	66, 209
MalI	GATC	5 cut(s)	605, 671, 764, 768, 777
MboI	GATC	5 cut(s)	603, 669, 762, 766, 775
MboII	GAAGA	3 cut(s)	235, 522, 534
MfeI	CAATTG	1 cut(s)	358
MflI	RGATCY	2 cut(s)	603, 669
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	356, 412, 495, 547, 605, 669, 781, 790
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	2 cut(s)	497, 529
MseI	TTAA	3 cut(s)	305, 507, 744
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	41, 255, 514
MspR9I	CCNGG	2 cut(s)	535, 635
MunI	CAATTG	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	535, 635
MvnI	CGCG	2 cut(s)	380, 684
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	5 cut(s)	603, 669, 762, 766, 775
NlaIII	CATG	5 cut(s)	172, 193, 583, 587, 819
NlaIV	GGNNCC	2 cut(s)	6, 758
NmuCI	GTSAC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	585
PagI	TCATGA	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	497, 529
PkrI	GCNGC	4 cut(s)	201, 233, 397, 482
Ple19I	CGATCG	1 cut(s)	765
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	533, 633
PspGI	CCWGG	2 cut(s)	533, 633
PspN4I	GGNNCC	2 cut(s)	6, 758
PspPI	GGNCC	2 cut(s)	4, 197
PsuI	RGATCY	2 cut(s)	603, 669
PvuI	CGATCG	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	305, 507, 744
SatI	GCNGC	4 cut(s)	200, 232, 396, 481
Sau3AI	GATC	5 cut(s)	603, 669, 762, 766, 775
Sau96I	GGNCC	2 cut(s)	4, 197
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	535, 635
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	599, 665
SmoI	CTYRAG	2 cut(s)	599, 665
Sse9I	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
SsiI	CCGC	3 cut(s)	200, 232, 380
SspMI	CTAG	2 cut(s)	783, 826
StyD4I	CCNGG	2 cut(s)	533, 633
TaaI	ACNGT	5 cut(s)	66, 97, 248, 303, 323
TaiI	ACGT	4 cut(s)	18, 73, 122, 279
TaqI	TCGA	7 cut(s)	59, 162, 279, 401, 409, 434, 765
TasI	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
TauI	GCSGC	2 cut(s)	202, 234
Tru1I	TTAA	3 cut(s)	305, 507, 744
Tru9I	TTAA	3 cut(s)	305, 507, 744
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	2 cut(s)	395, 480
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	4 cut(s)	157, 178, 185, 312
TspGWI	ACGGA	3 cut(s)	47, 534, 596
XapI	RAATTY	4 cut(s)	443, 503, 642, 799
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	2 cut(s)	497, 529
XspI	CTAG	2 cut(s)	783, 826
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.