Rh1DG248600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011591
Physical Location & Seq
Reverse (-)
46275370 .. 46276585
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG248600.1

Sequence Viewer

Length: 846 bp
ATGGCCCCAAGAGTTGGAACCCACGTAAAACGACGCCTGAGCCGCCGAGACTGGACGAAACTTCCGGGCGTCGTTACGGCATCGATACTGTCACGTCTCGGAGACATCGAGTCCCTGACGGTGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAGCAACCATACAAAGTTCATGTTCGGGCCGCCGTTGCGTTACGATATAGTGAAGATGTGCCGCCGCGCCATACACCGTAGCTCCGGTAGTTTTGTCTATGTCAACGTCGACTACTTTTGCAACAACGAACTGTTAAAGTATATCACCAACAGTTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTGGCATTATAACTGATGAGGTGTTGTGTGAAGCAGCTTTGAGACTTCCAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAGTAAAGCTCTACAAGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTTAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGGAACCATGCATGGTTTACTCCTTCTTGAGATCCGTTGGAATGAGCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGTGTAAAAACCTGAGATATATGAGCACAGATTTAGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATCGATCCCTCTAGTATATCGGACTTGAATTTGGTAGGCAAACCATGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

281

Amino Acids

32.22

Weight (kDa)

8.94

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 64 2.1e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 707
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 303
AccII CGCG 2 cut(s) 261, 786
AciI CCGC 6 cut(s) 43, 224, 256, 259, 784, 786
AclWI GGATC 3 cut(s) 622, 688, 791
AcsI RAATTY 3 cut(s) 467, 527, 820
AcyI GRCGYC 2 cut(s) 34, 69
AfiI CCNNNNNNNGG 2 cut(s) 14, 121
AgsI TTSAA 4 cut(s) 382, 517, 761, 820
AhdI GACNNNNNGTC 1 cut(s) 109
AjiI CACGTC 2 cut(s) 95, 144
AjnI CCWGG 1 cut(s) 557
AluBI AGCT 5 cut(s) 276, 353, 422, 482, 643
AluI AGCT 5 cut(s) 276, 353, 422, 482, 643
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 5 cut(s) 42, 96, 101, 421, 656
AlwI GGATC 3 cut(s) 622, 688, 791
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 3 cut(s) 3, 221, 787
ApeKI GCWGC 3 cut(s) 419, 501, 504
ApoI RAATTY 3 cut(s) 467, 527, 820
Asp700I GAANNNNTTC 1 cut(s) 553
AspLEI GCGC 4 cut(s) 180, 263, 501, 708
AspS9I GGNCC 3 cut(s) 4, 221, 788
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 431, 488, 491
BccI CCATC 2 cut(s) 124, 191
BceAI ACGGC 2 cut(s) 93, 211
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 559
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 5 cut(s) 42, 96, 101, 421, 656
BfaI CTAG 1 cut(s) 804
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 8 cut(s) 43, 224, 256, 259, 420, 502, 505, 787
BlsI GCNGC 8 cut(s) 44, 225, 257, 260, 421, 503, 506, 788
Bme1390I CCNGG 2 cut(s) 66, 559
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 689
BmgBI CACGTC 2 cut(s) 95, 144
BmgT120I GGNCC 3 cut(s) 4, 221, 788
BmiI GGNNCC 4 cut(s) 6, 19, 601, 782
BmrFI CCNGG 2 cut(s) 66, 559
BmsI GCATC 2 cut(s) 89, 571
BpiI GAAGAC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 66
Bsa29I ATCGAT 2 cut(s) 83, 795
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 34, 69
BsaJI CCNNGG 1 cut(s) 784
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 121
Bse1I ACTGG 3 cut(s) 56, 434, 474
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 559
BseCI ATCGAT 2 cut(s) 83, 795
BseDI CCNNGG 1 cut(s) 784
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 14, 121
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 4 cut(s) 29, 117, 385, 713
BseNI ACTGG 3 cut(s) 56, 434, 474
BseXI GCAGC 3 cut(s) 431, 488, 491
Bsh1236I CGCG 2 cut(s) 261, 786
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 3 cut(s) 5, 223, 789
BshVI ATCGAT 2 cut(s) 83, 795
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 737
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 65, 279
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 14, 121
BsmAI GTCTC 5 cut(s) 42, 96, 101, 421, 656
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 5, 223, 789
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 737
Bsp143I GATC 4 cut(s) 627, 693, 792, 796
BspACI CCGC 6 cut(s) 43, 224, 256, 259, 784, 786
BspANI GGCC 3 cut(s) 5, 223, 789
BspCNI CTCAG 4 cut(s) 30, 118, 384, 714
BspDI ATCGAT 2 cut(s) 83, 795
BspFNI CGCG 2 cut(s) 261, 786
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 4 cut(s) 6, 19, 601, 782
BspPI GGATC 3 cut(s) 622, 688, 791
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 3 cut(s) 56, 434, 474
BssECI CCNNGG 1 cut(s) 784
BssMI GATC 4 cut(s) 627, 693, 792, 796
BssNI GRCGYC 2 cut(s) 34, 69
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 5 cut(s) 90, 121, 272, 327, 347
BstACI GRCGYC 2 cut(s) 34, 69
BstBAI YACGTR 1 cut(s) 25
BstDEI CTNAG 4 cut(s) 38, 126, 371, 722
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 2 cut(s) 261, 786
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 4 cut(s) 180, 263, 501, 708
BstKTI GATC 4 cut(s) 630, 696, 795, 799
BstMAI GTCTC 5 cut(s) 42, 96, 101, 421, 656
BstMBI GATC 4 cut(s) 627, 693, 792, 796
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 2 cut(s) 42, 229
BstNI CCWGG 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 64, 557
BstUI CGCG 2 cut(s) 261, 786
BstV1I GCAGC 3 cut(s) 431, 488, 491
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 2 cut(s) 627, 693
BstYI RGATCY 2 cut(s) 627, 693
Bsu15I ATCGAT 2 cut(s) 83, 795
BsuRI GGCC 3 cut(s) 5, 223, 789
BsuTUI ATCGAT 2 cut(s) 83, 795
BtgI CCRYGG 1 cut(s) 784
BtrI CACGTC 2 cut(s) 95, 144
BtsCI GGATG 1 cut(s) 586
CciI TCATGA 1 cut(s) 192
CfoI GCGC 4 cut(s) 180, 263, 501, 708
Cfr13I GGNCC 3 cut(s) 4, 221, 788
Cfr42I CCGCGG 1 cut(s) 787
ClaI ATCGAT 2 cut(s) 83, 795
CseI GACGC 2 cut(s) 42, 58
CviAII CATG 5 cut(s) 193, 214, 604, 608, 837
DdeI CTNAG 4 cut(s) 38, 126, 371, 722
DpnI GATC 4 cut(s) 629, 695, 794, 798
DpnII GATC 4 cut(s) 627, 693, 792, 796
DraI TTTAAA 1 cut(s) 526
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 196, 217, 607, 611, 840
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FaqI GGGAC 1 cut(s) 97
FatI CATG 5 cut(s) 192, 213, 603, 607, 836
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 8 cut(s) 43, 224, 256, 259, 420, 502, 505, 787
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 8 cut(s) 43, 224, 256, 259, 420, 502, 505, 787
FspBI CTAG 1 cut(s) 804
FspI TGCGCA 1 cut(s) 707
GlaI GCGC 4 cut(s) 179, 262, 500, 707
GluI GCNGC 8 cut(s) 43, 224, 256, 259, 420, 502, 505, 787
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 3 cut(s) 5, 223, 789
HapII CCGG 2 cut(s) 65, 279
HgaI GACGC 2 cut(s) 42, 58
HhaI GCGC 4 cut(s) 180, 263, 501, 708
Hin1I GRCGYC 2 cut(s) 34, 69
Hin1II CATG 5 cut(s) 196, 217, 607, 611, 840
Hin6I GCGC 4 cut(s) 178, 261, 499, 706
HinP1I GCGC 4 cut(s) 178, 261, 499, 706
HincII GTYRAC 2 cut(s) 298, 304
HindII GTYRAC 2 cut(s) 298, 304
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 65, 279
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 3 cut(s) 298, 304, 614
Hpy188I TCNGA 2 cut(s) 101, 814
Hpy188III TCNNGA 5 cut(s) 193, 597, 623, 671, 691
Hpy8I GTNNAC 3 cut(s) 298, 304, 614
Hpy99I CGWCG 4 cut(s) 36, 74, 305, 578
HpyAV CCTTC 1 cut(s) 629
HpyCH4III ACNGT 5 cut(s) 90, 121, 272, 327, 347
HpyCH4IV ACGT 4 cut(s) 24, 94, 143, 300
HpyCH4V TGCA 7 cut(s) 138, 159, 315, 465, 584, 607, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 229
HpyF3I CTNAG 4 cut(s) 38, 126, 371, 722
HpySE526I ACGT 4 cut(s) 24, 94, 143, 300
Hsp92I GRCGYC 2 cut(s) 34, 69
Hsp92II CATG 5 cut(s) 196, 217, 607, 611, 840
HspAI GCGC 4 cut(s) 178, 261, 499, 706
KspI CCGCGG 1 cut(s) 787
Kzo9I GATC 4 cut(s) 627, 693, 792, 796
LmnI GCTCC 2 cut(s) 281, 786
Lsp1109I GCAGC 3 cut(s) 431, 488, 491
LweI GCATC 2 cut(s) 89, 571
MaeI CTAG 1 cut(s) 804
MaeII ACGT 4 cut(s) 24, 94, 143, 300
MaeIII GTNAC 3 cut(s) 73, 90, 233
MalI GATC 4 cut(s) 629, 695, 794, 798
MboI GATC 4 cut(s) 627, 693, 792, 796
MboII GAAGA 3 cut(s) 259, 546, 558
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 2 cut(s) 627, 693
MhlI GDGCHC 1 cut(s) 737
MluCI AATT 6 cut(s) 382, 467, 527, 666, 765, 820
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 7 cut(s) 380, 397, 436, 519, 571, 693, 811
Mph1103I ATGCAT 1 cut(s) 609
MroXI GAANNNNTTC 1 cut(s) 553
MseI TTAA 5 cut(s) 329, 525, 531, 768, 844
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 2 cut(s) 353, 786
MspI CCGG 2 cut(s) 65, 279
MspR9I CCNGG 2 cut(s) 66, 559
MunI CAATTG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 2 cut(s) 261, 786
MwoI GCNNNNNNNGC 2 cut(s) 42, 229
NciI CCSGG 1 cut(s) 66
NdeII GATC 4 cut(s) 627, 693, 792, 796
NlaIII CATG 5 cut(s) 196, 217, 607, 611, 840
NlaIV GGNNCC 4 cut(s) 6, 19, 601, 782
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 689
PagI TCATGA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 553
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 8 cut(s) 44, 225, 257, 260, 421, 503, 506, 788
Ple19I CGATCG 1 cut(s) 795
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 25
PsiI TTATAA 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 4 cut(s) 6, 19, 601, 782
PspPI GGNCC 3 cut(s) 4, 221, 788
PsuI RGATCY 2 cut(s) 627, 693
PvuI CGATCG 1 cut(s) 795
PvuII CAGCTG 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 458
SacII CCGCGG 1 cut(s) 787
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 329, 525, 531, 768, 844
SatI GCNGC 8 cut(s) 43, 224, 256, 259, 420, 502, 505, 787
Sau3AI GATC 4 cut(s) 627, 693, 792, 796
Sau96I GGNCC 3 cut(s) 4, 221, 788
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 66, 559
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 2 cut(s) 89, 571
Sfr274I CTCGAG 1 cut(s) 689
Sfr303I CCGCGG 1 cut(s) 787
SgrBI CCGCGG 1 cut(s) 787
SlaI CTCGAG 1 cut(s) 689
SmiI ATTTAAAT 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 623, 689
SmoI CTYRAG 2 cut(s) 623, 689
Sse9I AATT 6 cut(s) 382, 467, 527, 666, 765, 820
SsiI CCGC 6 cut(s) 43, 224, 256, 259, 784, 786
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 64, 557
SwaI ATTTAAAT 1 cut(s) 526
TaaI ACNGT 5 cut(s) 90, 121, 272, 327, 347
TaiI ACGT 4 cut(s) 27, 97, 146, 303
TaqI TCGA 7 cut(s) 83, 108, 186, 303, 458, 690, 795
TasI AATT 6 cut(s) 382, 467, 527, 666, 765, 820
TauI GCSGC 5 cut(s) 45, 226, 258, 261, 789
Tru1I TTAA 5 cut(s) 329, 525, 531, 768, 844
Tru9I TTAA 5 cut(s) 329, 525, 531, 768, 844
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 3 cut(s) 419, 501, 504
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 181, 202
TspGWI ACGGA 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 14
XapI RAATTY 3 cut(s) 467, 527, 820
XhoI CTCGAG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 553
XspI CTAG 1 cut(s) 804
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.