Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Forward (+)

21863711 .. 21865492

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCCCAAGCGACGTAAACCGAGACTGGACGGACCTTCCGGCCGTCATTACAGCGTCGATACTGTCACGTCTTGGAGACATTGAGTCCTTGACGGTGGCTGAGATGGTATGCAAGACGTGGCGTGAAATATGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAACAACAGCTTCATGTTCGGGCCGCCGTTGCGTTACGATATAGTGAAGATGTGCCGCCGTGCCATACACCGTAGCTCCGGTAGTTTTGTCTATATCAACGTCGACTACTTTTGCGACAATGAACTGTTAAATTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTGGCATTATAAATGACGCGGTGTTGTGTCAAGCAGCTTCGAGACTTCGAGTTTTGGAGGAGCTTGACATTTCGATGTGCAAATTCTCCAGTATAGCTATACAAATAGTTGGGCTCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACAACCGGAACGGAAGAAGGTCTTCCAGGCAGTATTATAGAAACGAGGATGCAGTTGCTATATCAGCAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGCGAAAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCGAGTGTAAAAACCTAAAACTTATGAGCAGAGATTTGGAAACAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCCGATCGATCCCTCTGATCCCTCTAGTATATCGGACTTGAATTTGGGGTGTAAGATGACTAAGCATGGTAAAAGTACAATCATAATGAGGTGGAGGCAAGATACTTCCAACATGCCAGAGTTGTTGCCAACAATGGTAATCGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

295

Amino Acids

33.81

Weight (kDa)

8.48

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 56	2.1e-11	F-box-like
F-box	PF00646	10 - 52	2.9e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	359, 663
AciI	CCGC	3 cut(s)	194, 226, 359
AclWI	GGATC	4 cut(s)	577, 643, 740, 749
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	5 cut(s)	301, 422, 482, 621, 778
AfaI	GTAC	1 cut(s)	814
AgsI	TTSAA	5 cut(s)	337, 472, 481, 716, 778
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	2 cut(s)	71, 120
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	7 cut(s)	180, 246, 308, 377, 403, 437, 598
AluI	AGCT	7 cut(s)	180, 246, 308, 377, 403, 437, 598
Alw26I	GTCTC	3 cut(s)	18, 72, 376
AlwI	GGATC	4 cut(s)	577, 643, 740, 749
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	3, 42, 191
ApeKI	GCWGC	2 cut(s)	374, 459
ApoI	RAATTY	5 cut(s)	301, 422, 482, 621, 778
Asp700I	GAANNNNTTC	2 cut(s)	476, 508
AspLEI	GCGC	2 cut(s)	156, 663
AspS9I	GGNCC	3 cut(s)	4, 34, 191
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	386, 446
BccI	CCATC	2 cut(s)	100, 167
BceAI	ACGGC	3 cut(s)	29, 181, 213
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	18, 72, 376
BfaI	CTAG	1 cut(s)	762
BisI	GCNGC	4 cut(s)	194, 226, 375, 460
BlsI	GCNGC	4 cut(s)	195, 227, 376, 461
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	644
BmgBI	CACGTC	2 cut(s)	71, 120
BmgT120I	GGNCC	3 cut(s)	4, 34, 191
BmiI	GGNNCC	2 cut(s)	6, 737
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	744
BsaWI	WCCGGW	2 cut(s)	248, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bse1I	ACTGG	2 cut(s)	32, 429
Bse3DI	GCAATG	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	744
BseGI	GGATG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	93, 340
BseNI	ACTGG	2 cut(s)	32, 429
BseRI	GAGGAG	2 cut(s)	413, 563
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	386, 446
Bsh1236I	CGCG	2 cut(s)	359, 663
Bsh1285I	CGRYCG	2 cut(s)	45, 744
BshFI	GGCC	3 cut(s)	5, 44, 193
BshVI	ATCGAT	1 cut(s)	744
BsiEI	CGRYCG	2 cut(s)	45, 744
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	41, 249, 493
BsmAI	GTCTC	3 cut(s)	18, 72, 376
BsnI	GGCC	3 cut(s)	5, 44, 193
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	582, 648, 741, 745, 754
BspACI	CCGC	3 cut(s)	194, 226, 359
BspANI	GGCC	3 cut(s)	5, 44, 193
BspCNI	CTCAG	2 cut(s)	94, 339
BspDI	ATCGAT	1 cut(s)	744
BspFNI	CGCG	2 cut(s)	359, 663
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	6, 737
BspPI	GGATC	4 cut(s)	577, 643, 740, 749
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	32, 429
BssMI	GATC	5 cut(s)	582, 648, 741, 745, 754
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	4 cut(s)	66, 97, 242, 297
BstDEI	CTNAG	3 cut(s)	102, 326, 798
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	2 cut(s)	359, 663
BstHHI	GCGC	2 cut(s)	156, 663
BstKTI	GATC	5 cut(s)	585, 651, 744, 748, 757
BstMAI	GTCTC	3 cut(s)	18, 72, 376
BstMBI	GATC	5 cut(s)	582, 648, 741, 745, 754
BstMCI	CGRYCG	2 cut(s)	45, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 551
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	512
BstUI	CGCG	2 cut(s)	359, 663
BstV1I	GCAGC	2 cut(s)	386, 446
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	582, 648
BstYI	RGATCY	2 cut(s)	582, 648
BstZI	CGGCCG	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	5, 44, 193
BsuTUI	ATCGAT	1 cut(s)	744
BtrI	CACGTC	2 cut(s)	71, 120
BtsCI	GGATG	1 cut(s)	541
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	156, 663
Cfr13I	GGNCC	3 cut(s)	4, 34, 191
ClaI	ATCGAT	1 cut(s)	744
CseI	GACGC	2 cut(s)	45, 365
Csp6I	GTAC	1 cut(s)	813
CviAII	CATG	6 cut(s)	169, 184, 559, 563, 803, 850
CviQI	GTAC	1 cut(s)	813
DdeI	CTNAG	3 cut(s)	102, 326, 798
DpnI	GATC	5 cut(s)	584, 650, 743, 747, 756
DpnII	GATC	5 cut(s)	582, 648, 741, 745, 754
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	6 cut(s)	172, 187, 562, 566, 806, 853
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FatI	CATG	6 cut(s)	168, 183, 558, 562, 802, 849
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	194, 226, 375, 460
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	194, 226, 375, 460
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	2 cut(s)	155, 662
GluI	GCNGC	4 cut(s)	194, 226, 375, 460
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	5, 44, 193
HapII	CCGG	3 cut(s)	41, 249, 493
HgaI	GACGC	2 cut(s)	45, 365
HhaI	GCGC	2 cut(s)	156, 663
Hin1II	CATG	6 cut(s)	172, 187, 562, 566, 806, 853
Hin6I	GCGC	2 cut(s)	154, 661
HinP1I	GCGC	2 cut(s)	154, 661
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	41, 249, 493
Hpy166II	GTNNAC	3 cut(s)	19, 274, 569
Hpy188I	TCNGA	2 cut(s)	754, 772
Hpy188III	TCNNGA	6 cut(s)	169, 381, 626, 646, 739, 880
Hpy8I	GTNNAC	3 cut(s)	19, 274, 569
Hpy99I	CGWCG	3 cut(s)	17, 61, 275
HpyAV	CCTTC	2 cut(s)	47, 498
HpyCH4III	ACNGT	4 cut(s)	66, 97, 242, 297
HpyCH4IV	ACGT	4 cut(s)	15, 70, 119, 270
HpyCH4V	TGCA	6 cut(s)	114, 135, 420, 539, 562, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 551
HpyF3I	CTNAG	3 cut(s)	102, 326, 798
HpySE526I	ACGT	4 cut(s)	15, 70, 119, 270
Hsp92II	CATG	6 cut(s)	172, 187, 562, 566, 806, 853
HspAI	GCGC	2 cut(s)	154, 661
Kzo9I	GATC	5 cut(s)	582, 648, 741, 745, 754
LmnI	GCTCC	3 cut(s)	251, 400, 741
LpnPI	CCDG	9 cut(s)	13, 54, 262, 294, 442, 499, 506, 526, 867
Lsp1109I	GCAGC	2 cut(s)	386, 446
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	4 cut(s)	15, 70, 119, 270
MaeIII	GTNAC	2 cut(s)	66, 203
MalI	GATC	5 cut(s)	584, 650, 743, 747, 756
MboI	GATC	5 cut(s)	582, 648, 741, 745, 754
MboII	GAAGA	3 cut(s)	229, 501, 513
MfeI	CAATTG	1 cut(s)	337
MflI	RGATCY	2 cut(s)	582, 648
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	7 cut(s)	301, 337, 422, 482, 621, 720, 778
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	870
Mph1103I	ATGCAT	1 cut(s)	564
MroXI	GAANNNNTTC	2 cut(s)	476, 508
MseI	TTAA	3 cut(s)	299, 486, 723
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	3 cut(s)	41, 249, 493
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	2 cut(s)	359, 663
MwoI	GCNNNNNNNGC	2 cut(s)	199, 551
NdeII	GATC	5 cut(s)	582, 648, 741, 745, 754
NlaIII	CATG	6 cut(s)	172, 187, 562, 566, 806, 853
NlaIV	GGNNCC	2 cut(s)	6, 737
NmuCI	GTSAC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	564
NspI	RCATGY	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	644
PagI	TCATGA	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	476, 508
PkrI	GCNGC	4 cut(s)	195, 227, 376, 461
Ple19I	CGATCG	1 cut(s)	744
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	6, 737
PspPI	GGNCC	3 cut(s)	4, 34, 191
PsuI	RGATCY	2 cut(s)	582, 648
PvuI	CGATCG	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
RseI	CAYNNNNRTG	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	299, 486, 723
SatI	GCNGC	4 cut(s)	194, 226, 375, 460
Sau3AI	GATC	5 cut(s)	582, 648, 741, 745, 754
Sau96I	GGNCC	3 cut(s)	4, 34, 191
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	526
Sfr274I	CTCGAG	1 cut(s)	644
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	578, 644
SmoI	CTYRAG	2 cut(s)	578, 644
Sse9I	AATT	7 cut(s)	301, 337, 422, 482, 621, 720, 778
SsiI	CCGC	3 cut(s)	194, 226, 359
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	66, 97, 242, 297
TaiI	ACGT	4 cut(s)	18, 73, 122, 273
TaqI	TCGA	9 cut(s)	59, 162, 273, 380, 388, 413, 645, 744, 879
TasI	AATT	7 cut(s)	301, 337, 422, 482, 621, 720, 778
TatI	WGTACW	1 cut(s)	812
TauI	GCSGC	2 cut(s)	196, 228
Tru1I	TTAA	3 cut(s)	299, 486, 723
Tru9I	TTAA	3 cut(s)	299, 486, 723
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	2 cut(s)	374, 459
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	4 cut(s)	157, 172, 185, 306
TspGWI	ACGGA	3 cut(s)	47, 513, 575
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	5 cut(s)	301, 422, 482, 621, 778
XceI	RCATGY	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	2 cut(s)	476, 508
XspI	CTAG	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.