Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Forward (+)

20544843 .. 20545229

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGCAAATTCTCCAATATAGCTATACAAATAGTTGGGCTCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACAACTGGAACGGAAGAAGGTCTTCCAGGCGGTATTATAGGGACGAGGACGCAGTTGCTATATCAGCAACCATGCATGGTTTACTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGCAAAAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCGAGTGTAAAAACCTGAAACTTATGAGCAGAGAGTTGGAAACAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCCGATCGATCCCTCTGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACCATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

129

Amino Acids

14.74

Weight (kDa)

8.77

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	4 cut(s)	160, 226, 323, 332
AcsI	RAATTY	4 cut(s)	8, 68, 204, 361
AgsI	TTSAA	4 cut(s)	58, 67, 299, 361
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	2 cut(s)	23, 181
AluI	AGCT	2 cut(s)	23, 181
AlwI	GGATC	4 cut(s)	160, 226, 323, 332
Ama87I	CYCGRG	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	4 cut(s)	8, 68, 204, 361
Asp700I	GAANNNNTTC	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	5 cut(s)	165, 231, 324, 328, 337
BspACI	CCGC	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	4 cut(s)	160, 226, 323, 332
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	5 cut(s)	165, 231, 324, 328, 337
Bst2UI	CCWGG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	5 cut(s)	168, 234, 327, 331, 340
BstMBI	GATC	5 cut(s)	165, 231, 324, 328, 337
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	165, 231
BstYI	RGATCY	2 cut(s)	165, 231
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
CfoI	GCGC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	131
CviAII	CATG	3 cut(s)	145, 149, 378
CviJI	RGCY	5 cut(s)	23, 40, 181, 195, 319
CviKI_1	RGCY	5 cut(s)	23, 40, 181, 195, 319
DpnI	GATC	5 cut(s)	167, 233, 326, 330, 339
DpnII	GATC	5 cut(s)	165, 231, 324, 328, 337
Eco24I	GRGCYC	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	3 cut(s)	148, 152, 381
FaiI	YATR	9 cut(s)	20, 26, 111, 134, 146, 150, 269, 350, 379
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	144, 148, 377
Fnu4HI	GCNGC	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	148, 152, 381
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	337, 355
Hpy188III	TCNNGA	3 cut(s)	209, 229, 322
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	6, 148, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	148, 152, 381
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	165, 231, 324, 328, 337
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	4 cut(s)	64, 85, 112, 272
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	345
MalI	GATC	5 cut(s)	167, 233, 326, 330, 339
MboI	GATC	5 cut(s)	165, 231, 324, 328, 337
MboII	GAAGA	2 cut(s)	87, 99
MflI	RGATCY	2 cut(s)	165, 231
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	5 cut(s)	8, 68, 204, 303, 361
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	5 cut(s)	60, 112, 231, 343, 352
Mph1103I	ATGCAT	1 cut(s)	150
MroXI	GAANNNNTTC	2 cut(s)	62, 94
MseI	TTAA	3 cut(s)	72, 306, 385
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	5 cut(s)	165, 231, 324, 328, 337
NlaIII	CATG	3 cut(s)	148, 152, 381
NlaIV	GGNNCC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	227
PdmI	GAANNNNTTC	2 cut(s)	62, 94
PkrI	GCNGC	1 cut(s)	47
Ple19I	CGATCG	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	165, 231
PvuI	CGATCG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	72, 306, 385
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	5 cut(s)	165, 231, 324, 328, 337
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	25, 95, 183, 261
Sfr274I	CTCGAG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	161, 227
SmoI	CTYRAG	2 cut(s)	161, 227
Sse9I	AATT	5 cut(s)	8, 68, 204, 303, 361
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	98
TaqI	TCGA	2 cut(s)	228, 327
TasI	AATT	5 cut(s)	8, 68, 204, 303, 361
Tru1I	TTAA	3 cut(s)	72, 306, 385
Tru9I	TTAA	3 cut(s)	72, 306, 385
TseI	GCWGC	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	99, 158
XapI	RAATTY	4 cut(s)	8, 68, 204, 361
XhoI	CTCGAG	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	62, 94
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.