RchiOBHm_Chr1g0353901

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011591
Physical Location & Seq
Reverse (-)
47085233 .. 47086547
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57951

Sequence Viewer

Length: 885 bp
ATGTTCGCCAGCACTACTAAACGATCGAGCAAAACCCTGATGGCCCCAAGAGTTGGAACCCACGTAAAACGACGCCTGAGCCGCCGAGACTGGACGGAACTTCCGGGCGTCGTTACGGCATCGATACTGTCACGTCTCGGAGACATCGAATCCCTGACGGTGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAGCAACCATACAGAGTTCATGTTCGGGCCGCCGTTGCGTTATGATATAGTGAAGATGTGCCGCCGCGCCATACACCGTAGCTCCGGTAGTTTTGTCTATGTCAACGTCGACTACTTTTGCAACAATGAACTGTTAAAGTATATCACCAACAGTTCAGCTGGATTTATTAGACACCTCAGTTTGTTCAATTGTGGCATTATAACTGATGAGGTTTTGTGTGAAGCAGCTTTGAGACTGCCAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAGTAAAGCTCTACAAGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGGAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGATCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGTGTAAAAACCTGAGATATATGAGCACAGATTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATCGATCCCTCTAGTATATCGGACTTGAATTTGGTAGGCAAACCATGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

294

Amino Acids

33.61

Weight (kDa)

8.94

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 77 2.1e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
Acc16I TGCGCA 1 cut(s) 746
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 300, 825
AciI CCGC 6 cut(s) 82, 263, 295, 298, 823, 825
AclWI GGATC 3 cut(s) 661, 727, 830
AcsI RAATTY 3 cut(s) 506, 566, 859
AcyI GRCGYC 2 cut(s) 73, 108
AfiI CCNNNNNNNGG 2 cut(s) 53, 160
AgsI TTSAA 5 cut(s) 421, 556, 565, 800, 859
AjiI CACGTC 2 cut(s) 134, 183
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 4 cut(s) 315, 392, 461, 521
AluI AGCT 4 cut(s) 315, 392, 461, 521
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 5 cut(s) 81, 135, 140, 460, 695
AlwI GGATC 3 cut(s) 661, 727, 830
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 3 cut(s) 42, 260, 826
ApeKI GCWGC 3 cut(s) 458, 540, 543
ApoI RAATTY 3 cut(s) 506, 566, 859
Asp700I GAANNNNTTC 2 cut(s) 560, 592
AspLEI GCGC 4 cut(s) 219, 302, 540, 747
AspS9I GGNCC 3 cut(s) 43, 260, 827
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 3 cut(s) 470, 527, 530
BccI CCATC 3 cut(s) 34, 163, 230
BceAI ACGGC 2 cut(s) 132, 250
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 1 cut(s) 598
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 5 cut(s) 81, 135, 140, 460, 695
BfaI CTAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 541
BisI GCNGC 8 cut(s) 82, 263, 295, 298, 459, 541, 544, 826
BlsI GCNGC 8 cut(s) 83, 264, 296, 299, 460, 542, 545, 827
Bme1390I CCNGG 2 cut(s) 105, 598
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 2 cut(s) 134, 183
BmgT120I GGNCC 3 cut(s) 43, 260, 827
BmiI GGNNCC 4 cut(s) 45, 58, 640, 821
BmrFI CCNGG 2 cut(s) 105, 598
BmsI GCATC 2 cut(s) 128, 610
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 105
Bsa29I ATCGAT 2 cut(s) 122, 834
BsaAI YACGTR 1 cut(s) 64
BsaHI GRCGYC 2 cut(s) 73, 108
BsaJI CCNNGG 1 cut(s) 823
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 160
Bse1I ACTGG 3 cut(s) 95, 473, 513
Bse3DI GCAATG 1 cut(s) 697
BseBI CCWGG 1 cut(s) 598
BseCI ATCGAT 2 cut(s) 122, 834
BseDI CCNNGG 1 cut(s) 823
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 53, 160
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 4 cut(s) 68, 156, 424, 752
BseNI ACTGG 3 cut(s) 95, 473, 513
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 3 cut(s) 470, 527, 530
Bsh1236I CGCG 2 cut(s) 300, 825
Bsh1285I CGRYCG 2 cut(s) 26, 834
BshFI GGCC 3 cut(s) 44, 262, 828
BshVI ATCGAT 2 cut(s) 122, 834
BsiEI CGRYCG 2 cut(s) 26, 834
BsiHKAI GWGCWC 1 cut(s) 776
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 2 cut(s) 104, 318
BslI CCNNNNNNNGG 2 cut(s) 53, 160
BsmAI GTCTC 5 cut(s) 81, 135, 140, 460, 695
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 3 cut(s) 44, 262, 828
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 776
Bsp143I GATC 6 cut(s) 23, 666, 679, 732, 831, 835
BspACI CCGC 6 cut(s) 82, 263, 295, 298, 823, 825
BspANI GGCC 3 cut(s) 44, 262, 828
BspCNI CTCAG 4 cut(s) 69, 157, 423, 753
BspDI ATCGAT 2 cut(s) 122, 834
BspFNI CGCG 2 cut(s) 300, 825
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 45, 58, 640, 821
BspPI GGATC 3 cut(s) 661, 727, 830
BsrDI GCAATG 1 cut(s) 697
BsrI ACTGG 3 cut(s) 95, 473, 513
BssECI CCNNGG 1 cut(s) 823
BssMI GATC 6 cut(s) 23, 666, 679, 732, 831, 835
BssNI GRCGYC 2 cut(s) 73, 108
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 5 cut(s) 129, 160, 311, 366, 386
BstACI GRCGYC 2 cut(s) 73, 108
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 77, 165, 410, 761
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 2 cut(s) 300, 825
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 4 cut(s) 219, 302, 540, 747
BstKTI GATC 6 cut(s) 26, 669, 682, 735, 834, 838
BstMAI GTCTC 5 cut(s) 81, 135, 140, 460, 695
BstMBI GATC 6 cut(s) 23, 666, 679, 732, 831, 835
BstMCI CGRYCG 2 cut(s) 26, 834
BstMWI GCNNNNNNNGC 2 cut(s) 81, 268
BstNI CCWGG 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 103, 596
BstUI CGCG 2 cut(s) 300, 825
BstV1I GCAGC 3 cut(s) 470, 527, 530
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 2 cut(s) 666, 732
BstYI RGATCY 2 cut(s) 666, 732
Bsu15I ATCGAT 2 cut(s) 122, 834
BsuRI GGCC 3 cut(s) 44, 262, 828
BsuTUI ATCGAT 2 cut(s) 122, 834
BtgI CCRYGG 1 cut(s) 823
BtrI CACGTC 2 cut(s) 134, 183
BtsCI GGATG 1 cut(s) 625
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 1 cut(s) 231
CfoI GCGC 4 cut(s) 219, 302, 540, 747
Cfr13I GGNCC 3 cut(s) 43, 260, 827
Cfr42I CCGCGG 1 cut(s) 826
ClaI ATCGAT 2 cut(s) 122, 834
CseI GACGC 2 cut(s) 81, 97
CviAII CATG 5 cut(s) 232, 253, 643, 647, 876
DdeI CTNAG 4 cut(s) 77, 165, 410, 761
DpnI GATC 6 cut(s) 25, 668, 681, 734, 833, 837
DpnII GATC 6 cut(s) 23, 666, 679, 732, 831, 835
Eco88I CYCGRG 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 648
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 5 cut(s) 235, 256, 646, 650, 879
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FatI CATG 5 cut(s) 231, 252, 642, 646, 875
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 8 cut(s) 82, 263, 295, 298, 459, 541, 544, 826
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 8 cut(s) 82, 263, 295, 298, 459, 541, 544, 826
FspBI CTAG 1 cut(s) 843
FspI TGCGCA 1 cut(s) 746
GlaI GCGC 4 cut(s) 218, 301, 539, 746
GluI GCNGC 8 cut(s) 82, 263, 295, 298, 459, 541, 544, 826
GsuI CTGGAG 1 cut(s) 496
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 3 cut(s) 44, 262, 828
HapII CCGG 2 cut(s) 104, 318
HgaI GACGC 2 cut(s) 81, 97
HhaI GCGC 4 cut(s) 219, 302, 540, 747
Hin1I GRCGYC 2 cut(s) 73, 108
Hin1II CATG 5 cut(s) 235, 256, 646, 650, 879
Hin6I GCGC 4 cut(s) 217, 300, 538, 745
HinP1I GCGC 4 cut(s) 217, 300, 538, 745
HincII GTYRAC 2 cut(s) 337, 343
HindII GTYRAC 2 cut(s) 337, 343
HinfI GANTC 1 cut(s) 149
HpaII CCGG 2 cut(s) 104, 318
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 3 cut(s) 337, 343, 653
Hpy188I TCNGA 3 cut(s) 140, 684, 853
Hpy188III TCNNGA 4 cut(s) 232, 636, 710, 730
Hpy8I GTNNAC 3 cut(s) 337, 343, 653
Hpy99I CGWCG 4 cut(s) 75, 113, 344, 617
HpyCH4III ACNGT 5 cut(s) 129, 160, 311, 366, 386
HpyCH4IV ACGT 4 cut(s) 63, 133, 182, 339
HpyCH4V TGCA 7 cut(s) 177, 198, 354, 504, 623, 646, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 268
HpyF3I CTNAG 4 cut(s) 77, 165, 410, 761
HpySE526I ACGT 4 cut(s) 63, 133, 182, 339
Hsp92I GRCGYC 2 cut(s) 73, 108
Hsp92II CATG 5 cut(s) 235, 256, 646, 650, 879
HspAI GCGC 4 cut(s) 217, 300, 538, 745
KspI CCGCGG 1 cut(s) 826
Kzo9I GATC 6 cut(s) 23, 666, 679, 732, 831, 835
LmnI GCTCC 2 cut(s) 320, 825
Lsp1109I GCAGC 3 cut(s) 470, 527, 530
LweI GCATC 2 cut(s) 128, 610
MaeI CTAG 1 cut(s) 843
MaeII ACGT 4 cut(s) 63, 133, 182, 339
MaeIII GTNAC 2 cut(s) 112, 129
MalI GATC 6 cut(s) 25, 668, 681, 734, 833, 837
MboI GATC 6 cut(s) 23, 666, 679, 732, 831, 835
MboII GAAGA 3 cut(s) 298, 585, 597
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 2 cut(s) 666, 732
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 6 cut(s) 421, 506, 566, 705, 804, 859
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 419, 436, 475, 558, 610, 668, 732, 850
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 2 cut(s) 560, 592
MseI TTAA 4 cut(s) 368, 570, 807, 883
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 392, 825
MspI CCGG 2 cut(s) 104, 318
MspR9I CCNGG 2 cut(s) 105, 598
MunI CAATTG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 598
MvnI CGCG 2 cut(s) 300, 825
MwoI GCNNNNNNNGC 2 cut(s) 81, 268
NciI CCSGG 1 cut(s) 105
NdeII GATC 6 cut(s) 23, 666, 679, 732, 831, 835
NlaIII CATG 5 cut(s) 235, 256, 646, 650, 879
NlaIV GGNNCC 4 cut(s) 45, 58, 640, 821
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 129
NsbI TGCGCA 1 cut(s) 746
NsiI ATGCAT 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 728
PagI TCATGA 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdmI GAANNNNTTC 2 cut(s) 560, 592
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 8 cut(s) 83, 264, 296, 299, 460, 542, 545, 827
Ple19I CGATCG 2 cut(s) 26, 834
Ppu21I YACGTR 1 cut(s) 64
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 4 cut(s) 45, 58, 640, 821
PspPI GGNCC 3 cut(s) 43, 260, 827
PsuI RGATCY 2 cut(s) 666, 732
PvuI CGATCG 2 cut(s) 26, 834
PvuII CAGCTG 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 497
SacII CCGCGG 1 cut(s) 826
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 368, 570, 807, 883
SatI GCNGC 8 cut(s) 82, 263, 295, 298, 459, 541, 544, 826
Sau3AI GATC 6 cut(s) 23, 666, 679, 732, 831, 835
Sau96I GGNCC 3 cut(s) 43, 260, 827
ScrFI CCNGG 2 cut(s) 105, 598
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 2 cut(s) 128, 610
Sfr274I CTCGAG 1 cut(s) 728
Sfr303I CCGCGG 1 cut(s) 826
SgrBI CCGCGG 1 cut(s) 826
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 662, 728
SmoI CTYRAG 2 cut(s) 662, 728
Sse9I AATT 6 cut(s) 421, 506, 566, 705, 804, 859
SsiI CCGC 6 cut(s) 82, 263, 295, 298, 823, 825
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 103, 596
TaaI ACNGT 5 cut(s) 129, 160, 311, 366, 386
TaiI ACGT 4 cut(s) 66, 136, 185, 342
TaqI TCGA 8 cut(s) 26, 122, 147, 225, 342, 497, 729, 834
TasI AATT 6 cut(s) 421, 506, 566, 705, 804, 859
TauI GCSGC 5 cut(s) 84, 265, 297, 300, 828
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 4 cut(s) 368, 570, 807, 883
Tru9I TTAA 4 cut(s) 368, 570, 807, 883
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 3 cut(s) 458, 540, 543
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 220, 241, 375
TspGWI ACGGA 2 cut(s) 110, 659
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 3 cut(s) 506, 566, 859
XhoI CTCGAG 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 2 cut(s) 560, 592
XspI CTAG 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.