Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000523.1

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Reverse (-)

49092 .. 49973

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000523.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggccccaagagttggaacccacgtaaaacgccgcctgagccgccgagactggacggaacttccgggcgtcgttacggcatcgatactgtcacgtctcggagacatcgagtccttgacggtggctgagatggtgtgcaagacgtggcatgaaatctgcaaagaccctatgctgtggcgcaccatcgacttcatgagcaaccatacaaagttcatgttcgggccgccgttgcgttacgatatagtgcagatgtgtccacgtgccatacaccgtagctctggtagttctgtctacgtcaacgtcgactacttttgcaacaatgaactgttaaagtatatcaccaacagagcgggtcgctcttcaatacgtcgccatcatgaacccggatatgggttcattcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

134

Amino Acids

15.57

Weight (kDa)

9.58

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccBSI	CCGCTC	1 cut(s)	350
AccI	GTMKAC	2 cut(s)	291, 303
AciI	CCGC	4 cut(s)	34, 43, 224, 350
AcvI	CACGTG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	14, 389, 390
AgsI	TTSAA	1 cut(s)	363
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	2 cut(s)	95, 144
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	42, 96, 101
AoxI	GGCC	2 cut(s)	3, 221
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	4, 221
AsuC2I	CCSGG	2 cut(s)	66, 384
AsuHPI	GGTGA	1 cut(s)	331
BbrPI	CACGTG	1 cut(s)	260
BccI	CCATC	3 cut(s)	124, 191, 381
BceAI	ACGGC	2 cut(s)	93, 211
BcnI	CCSGG	2 cut(s)	66, 384
BcoDI	GTCTC	3 cut(s)	42, 96, 101
BisI	GCNGC	3 cut(s)	34, 43, 224
BlsI	GCNGC	3 cut(s)	35, 44, 225
Bme1390I	CCNGG	2 cut(s)	66, 384
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgBI	CACGTC	2 cut(s)	95, 144
BmgT120I	GGNCC	2 cut(s)	4, 221
BmiI	GGNNCC	2 cut(s)	6, 19
BmrFI	CCNGG	2 cut(s)	66, 384
BmsI	GCATC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	66, 384
Bsa29I	ATCGAT	1 cut(s)	83
BsaAI	YACGTR	2 cut(s)	25, 260
BsaHI	GRCGYC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 389, 390
Bse1I	ACTGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	14, 389, 390
BseMII	CTCAG	2 cut(s)	29, 117
BseNI	ACTGG	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	5, 223
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	65, 384
BslI	CCNNNNNNNGG	3 cut(s)	14, 389, 390
BsmAI	GTCTC	3 cut(s)	42, 96, 101
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	5, 223
BspACI	CCGC	4 cut(s)	34, 43, 224, 350
BspANI	GGCC	2 cut(s)	5, 223
BspCNI	CTCAG	2 cut(s)	30, 118
BspDI	ATCGAT	1 cut(s)	83
BspHI	TCATGA	2 cut(s)	192, 376
BspLI	GGNNCC	2 cut(s)	6, 19
BspQI	GCTCTTC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	56
BssNI	GRCGYC	1 cut(s)	69
Bst4CI	ACNGT	4 cut(s)	90, 121, 272, 327
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	69
BstBAI	YACGTR	2 cut(s)	25, 260
BstDEI	CTNAG	2 cut(s)	38, 126
BstHHI	GCGC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	42, 96, 101
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 42, 229
BstSCI	CCNGG	2 cut(s)	64, 382
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	5, 223
BsuTUI	ATCGAT	1 cut(s)	83
BtrI	CACGTC	2 cut(s)	95, 144
CciI	TCATGA	2 cut(s)	192, 376
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	4, 221
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	1 cut(s)	58
CviAII	CATG	4 cut(s)	149, 193, 214, 377
CviJI	RGCY	5 cut(s)	5, 42, 125, 223, 276
CviKI_1	RGCY	5 cut(s)	5, 42, 125, 223, 276
DdeI	CTNAG	2 cut(s)	38, 126
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	364
Eco72I	CACGTG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	4 cut(s)	152, 196, 217, 380
FatI	CATG	4 cut(s)	148, 192, 213, 376
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	2 cut(s)	291, 303
Fnu4HI	GCNGC	3 cut(s)	34, 43, 224
Fsp4HI	GCNGC	3 cut(s)	34, 43, 224
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	3 cut(s)	34, 43, 224
HaeIII	GGCC	2 cut(s)	5, 223
HapII	CCGG	2 cut(s)	65, 384
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	152, 196, 217, 380
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	298, 304
HindII	GTYRAC	2 cut(s)	298, 304
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	65, 384
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	4 cut(s)	257, 292, 298, 304
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	193, 377
Hpy8I	GTNNAC	4 cut(s)	257, 292, 298, 304
Hpy99I	CGWCG	3 cut(s)	74, 305, 372
HpyCH4III	ACNGT	4 cut(s)	90, 121, 272, 327
HpyCH4IV	ACGT	7 cut(s)	24, 94, 143, 259, 294, 300, 367
HpyCH4V	TGCA	4 cut(s)	138, 159, 247, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 42, 229
HpyF3I	CTNAG	2 cut(s)	38, 126
HpySE526I	ACGT	7 cut(s)	24, 94, 143, 259, 294, 300, 367
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	152, 196, 217, 380
HspAI	GCGC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	364
LpnPI	CCDG	5 cut(s)	37, 50, 78, 264, 397
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	7 cut(s)	24, 94, 143, 259, 294, 300, 367
MaeIII	GTNAC	3 cut(s)	73, 90, 233
MbiI	CCGCTC	1 cut(s)	350
MboII	GAAGA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	329, 403
MspI	CCGG	2 cut(s)	65, 384
MspR9I	CCNGG	2 cut(s)	66, 384
MwoI	GCNNNNNNNGC	3 cut(s)	39, 42, 229
NciI	CCSGG	2 cut(s)	66, 384
NlaIII	CATG	4 cut(s)	152, 196, 217, 380
NlaIV	GGNNCC	2 cut(s)	6, 19
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	90
PagI	TCATGA	2 cut(s)	192, 376
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 300
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	35, 44, 225
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	2 cut(s)	25, 260
PspCI	CACGTG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	6, 19
PspPI	GGNCC	2 cut(s)	4, 221
SalI	GTCGAC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	329, 403
SatI	GCNGC	3 cut(s)	34, 43, 224
Sau96I	GGNCC	2 cut(s)	4, 221
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	66, 384
SetI	ASST	8 cut(s)	27, 97, 146, 262, 278, 297, 303, 370
SfaNI	GCATC	1 cut(s)	89
SsiI	CCGC	4 cut(s)	34, 43, 224, 350
StyD4I	CCNGG	2 cut(s)	64, 382
TaaI	ACNGT	4 cut(s)	90, 121, 272, 327
TaiI	ACGT	7 cut(s)	27, 97, 146, 262, 297, 303, 370
TaqI	TCGA	4 cut(s)	83, 108, 186, 303
TauI	GCSGC	3 cut(s)	36, 45, 226
Tru1I	TTAA	2 cut(s)	329, 403
Tru9I	TTAA	2 cut(s)	329, 403
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	7 cut(s)	165, 181, 202, 336, 385, 389, 393
TspGWI	ACGGA	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	2 cut(s)	291, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.