Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Forward (+)

21821840 .. 21822734

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTTGGAACCCACGTAAAACGACCCCCGAGCCTCCGAGACCGGACGGAACTTCCGGCGTCGTTACGGAGTCGATACTGTCACGTCTCGGAGACATTGAGTCCCCGACGGTGGCTAAGATGGTGTGCAAGACGTGGCGTGAAATCCGCAAAGACCCTATGCCGTGGCGCACCATCGACTTCATGAGCAACCATACAAAGTTCATGTTCGGGCCGCCGTTGCGTTACGATATAGTGAAGATGTGCCGCCGCGCCATACTCCGTAGCTCGGAGGTTTTGTCTATGTCAACTTCAGCGGGCTTTATTAGACACCTCGGTTTGTTCAATTGTGGCATTATAACCGATGAGGTGTTGTGTGAAGCAGCTTTGAGACTTCCAGCTTTGGAGGAACTTGACATTTCGATGTGCAATTCTCCAGTAAAGCTCTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

144

Amino Acids

16.33

Weight (kDa)

8.91

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccII	CGCG	1 cut(s)	252
AciI	CCGC	5 cut(s)	148, 215, 247, 250, 296
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	112, 268
AgsI	TTSAA	1 cut(s)	325
AhdI	GACNNNNNGTC	1 cut(s)	100
AjiI	CACGTC	2 cut(s)	86, 135
AluBI	AGCT	4 cut(s)	267, 365, 380, 424
AluI	AGCT	4 cut(s)	267, 365, 380, 424
Alw26I	GTCTC	4 cut(s)	34, 87, 92, 364
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	171, 254
AspS9I	GGNCC	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	115, 182
BceAI	ACGGC	2 cut(s)	148, 202
BcoDI	GTCTC	4 cut(s)	34, 87, 92, 364
BisI	GCNGC	4 cut(s)	215, 247, 250, 363
BlsI	GCNGC	4 cut(s)	216, 248, 251, 364
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	2 cut(s)	86, 135
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	164, 313
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 268
Bse1I	ACTGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	164, 313
BseLI	CCNNNNNNNGG	2 cut(s)	112, 268
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	44, 57
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	112, 268
BsmAI	GTCTC	4 cut(s)	34, 87, 92, 364
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	29
BspACI	CCGC	5 cut(s)	148, 215, 247, 250, 296
BspANI	GGCC	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	164, 313
BssNI	GRCGYC	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	81, 112
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	2 cut(s)	171, 254
BstMAI	GTCTC	4 cut(s)	34, 87, 92, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	2 cut(s)	86, 135
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	2 cut(s)	171, 254
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	49
CviAII	CATG	2 cut(s)	184, 205
CviJI	RGCY	8 cut(s)	34, 116, 214, 267, 300, 365, 380, 424
CviKI_1	RGCY	8 cut(s)	34, 116, 214, 267, 300, 365, 380, 424
DdeI	CTNAG	1 cut(s)	117
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	187, 208
FaiI	YATR	8 cut(s)	161, 185, 195, 206, 233, 257, 284, 338
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	183, 204
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	215, 247, 250, 363
Fsp4HI	GCNGC	4 cut(s)	215, 247, 250, 363
GlaI	GCGC	2 cut(s)	170, 253
GluI	GCNGC	4 cut(s)	215, 247, 250, 363
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	44, 57
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	171, 254
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	187, 208
Hin6I	GCGC	2 cut(s)	169, 252
HinP1I	GCGC	2 cut(s)	169, 252
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	2 cut(s)	71, 101
HpaII	CCGG	2 cut(s)	44, 57
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	39, 92, 271
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	65, 112
HpyCH4III	ACNGT	2 cut(s)	81, 112
HpyCH4IV	ACGT	3 cut(s)	16, 85, 134
HpyCH4V	TGCA	2 cut(s)	129, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	3 cut(s)	16, 85, 134
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	187, 208
HspAI	GCGC	2 cut(s)	169, 252
LpnPI	CCDG	4 cut(s)	57, 70, 390, 429
Lsp1109I	GCAGC	1 cut(s)	374
MaeII	ACGT	3 cut(s)	16, 85, 134
MaeIII	GTNAC	3 cut(s)	64, 81, 224
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	325
MluCI	AATT	2 cut(s)	325, 409
MlyI	GAGTC	2 cut(s)	80, 110
MnlI	CCTC	5 cut(s)	45, 265, 323, 340, 379
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	44, 57
MunI	CAATTG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	187, 208
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	81
PagI	TCATGA	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	216, 248, 251, 364
PleI	GAGTC	2 cut(s)	79, 109
PpsI	GAGTC	2 cut(s)	79, 109
Ppu21I	YACGTR	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	401
SatI	GCNGC	4 cut(s)	215, 247, 250, 363
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	2 cut(s)	80, 110
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	325, 409
SsiI	CCGC	5 cut(s)	148, 215, 247, 250, 296
TaaI	ACNGT	2 cut(s)	81, 112
TaiI	ACGT	3 cut(s)	19, 88, 137
TaqI	TCGA	3 cut(s)	74, 177, 401
TasI	AATT	2 cut(s)	325, 409
TauI	GCSGC	3 cut(s)	217, 249, 252
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	172, 193
TspGWI	ACGGA	3 cut(s)	63, 83, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.