Rh1DG249200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011591
Physical Location & Seq
Reverse (-)
46317463 .. 46317909
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG249200.1

Sequence Viewer

Length: 447 bp
ATGAGGTGTTTGTGTGAAGCAGCTTTGAGACTTCCAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAGTAAAGCTCTACAAGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGGAACCATGCATGGTTTACTCCTTCTTGAGATCCGTTGGAATGAGCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGCGTAAAAACCTGAGATATATGAGCACAGATTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATCGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACCATGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

8.54

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 308
AccII CGCG 1 cut(s) 387
AciI CCGC 2 cut(s) 385, 387
AclWI GGATC 3 cut(s) 223, 289, 392
AcsI RAATTY 3 cut(s) 68, 128, 421
AgsI TTSAA 4 cut(s) 118, 127, 362, 421
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 3 cut(s) 23, 83, 244
AluI AGCT 3 cut(s) 23, 83, 244
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 2 cut(s) 22, 257
AlwI GGATC 3 cut(s) 223, 289, 392
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 20, 102, 105
ApoI RAATTY 3 cut(s) 68, 128, 421
Asp700I GAANNNNTTC 2 cut(s) 122, 154
AspLEI GCGC 2 cut(s) 102, 309
AspS9I GGNCC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 32, 89, 92
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 22, 257
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 4 cut(s) 21, 103, 106, 388
BlsI GCNGC 4 cut(s) 22, 104, 107, 389
Bme1390I CCNGG 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 202, 383
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 35, 75
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 35, 75
BseXI GCAGC 3 cut(s) 32, 89, 92
Bsh1236I CGCG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 22, 257
BsnI GGCC 1 cut(s) 390
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 4 cut(s) 228, 294, 393, 397
BspACI CCGC 2 cut(s) 385, 387
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 202, 383
BspPI GGATC 3 cut(s) 223, 289, 392
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 35, 75
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 4 cut(s) 228, 294, 393, 397
Bst2UI CCWGG 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 309
BstKTI GATC 4 cut(s) 231, 297, 396, 400
BstMAI GTCTC 2 cut(s) 22, 257
BstMBI GATC 4 cut(s) 228, 294, 393, 397
BstMCI CGRYCG 1 cut(s) 396
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 32, 89, 92
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 228, 294
BstYI RGATCY 2 cut(s) 228, 294
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 2 cut(s) 102, 309
Cfr13I GGNCC 1 cut(s) 389
Cfr42I CCGCGG 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 396
CviAII CATG 3 cut(s) 205, 209, 438
CviJI RGCY 6 cut(s) 23, 83, 244, 258, 382, 390
CviKI_1 RGCY 6 cut(s) 23, 83, 244, 258, 382, 390
DdeI CTNAG 1 cut(s) 323
DpnI GATC 4 cut(s) 230, 296, 395, 399
DpnII GATC 4 cut(s) 228, 294, 393, 397
Eco88I CYCGRG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 210
FaeI CATG 3 cut(s) 208, 212, 441
FaiI YATR 8 cut(s) 171, 194, 206, 210, 330, 332, 410, 439
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 3 cut(s) 204, 208, 437
Fnu4HI GCNGC 4 cut(s) 21, 103, 106, 388
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 21, 103, 106, 388
FspBI CTAG 1 cut(s) 405
FspI TGCGCA 1 cut(s) 308
GlaI GCGC 2 cut(s) 101, 308
GluI GCNGC 4 cut(s) 21, 103, 106, 388
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 1 cut(s) 390
HhaI GCGC 2 cut(s) 102, 309
Hin1II CATG 3 cut(s) 208, 212, 441
Hin6I GCGC 2 cut(s) 100, 307
HinP1I GCGC 2 cut(s) 100, 307
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 198, 224, 272, 292
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 66, 185, 208, 252
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 3 cut(s) 208, 212, 441
HspAI GCGC 2 cut(s) 100, 307
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 4 cut(s) 228, 294, 393, 397
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 6 cut(s) 48, 88, 145, 172, 183, 335
Lsp1109I GCAGC 3 cut(s) 32, 89, 92
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 405
MalI GATC 4 cut(s) 230, 296, 395, 399
MboI GATC 4 cut(s) 228, 294, 393, 397
MboII GAAGA 2 cut(s) 147, 159
MflI RGATCY 2 cut(s) 228, 294
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 5 cut(s) 68, 128, 267, 366, 421
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 5 cut(s) 37, 120, 172, 294, 412
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 2 cut(s) 122, 154
MseI TTAA 3 cut(s) 132, 369, 445
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 387
NdeII GATC 4 cut(s) 228, 294, 393, 397
NlaIII CATG 3 cut(s) 208, 212, 441
NlaIV GGNNCC 2 cut(s) 202, 383
NsbI TGCGCA 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 290
PdmI GAANNNNTTC 2 cut(s) 122, 154
PkrI GCNGC 4 cut(s) 22, 104, 107, 389
Ple19I CGATCG 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 202, 383
PspPI GGNCC 1 cut(s) 389
PsuI RGATCY 2 cut(s) 228, 294
PvuI CGATCG 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 59
SacII CCGCGG 1 cut(s) 388
SaqAI TTAA 3 cut(s) 132, 369, 445
SatI GCNGC 4 cut(s) 21, 103, 106, 388
Sau3AI GATC 4 cut(s) 228, 294, 393, 397
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 338
SetI ASST 5 cut(s) 8, 25, 85, 246, 324
SfaNI GCATC 1 cut(s) 172
Sfr274I CTCGAG 1 cut(s) 290
Sfr303I CCGCGG 1 cut(s) 388
SgrBI CCGCGG 1 cut(s) 388
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 224, 290
SmoI CTYRAG 2 cut(s) 224, 290
Sse9I AATT 5 cut(s) 68, 128, 267, 366, 421
SsiI CCGC 2 cut(s) 385, 387
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 158
TaqI TCGA 3 cut(s) 59, 291, 396
TasI AATT 5 cut(s) 68, 128, 267, 366, 421
TauI GCSGC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 132, 369, 445
Tru9I TTAA 3 cut(s) 132, 369, 445
TseI GCWGC 3 cut(s) 20, 102, 105
TspGWI ACGGA 1 cut(s) 221
XapI RAATTY 3 cut(s) 68, 128, 421
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 2 cut(s) 122, 154
XspI CTAG 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.