Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005552.1

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Forward (+)

12876 .. 13268

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005552.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggccccaagagttggaacccacgtaaaacgacgcctgagccgccgagactggacggaacttccgggcgtcgttacggcatcgatactgtcacgtctcggagacatcgagtccctgacggtggctgagatggtgtgcaagacgtggtgtgaaatctgcaaagaccctatgctgtggcgcaccatcgacttcatgagcaaccatacaaagttcatgttcgggccgccgttgcgttacgatatagtgcagatgtgtccacgtgccatacaccgtagctctggtagttctgtctacgtcaacgtcgactacttttgcaacaatgaactgttaaagtatatcaccaacaggttcgaattattaatttttattttattttgcagaaagcatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

130

Amino Acids

15.23

Weight (kDa)

9.19

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	291, 303
AciI	CCGC	2 cut(s)	43, 224
AcvI	CACGTG	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	34, 69
AfiI	CCNNNNNNNGG	2 cut(s)	14, 121
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	2 cut(s)	95, 144
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	42, 96, 101
AoxI	GGCC	2 cut(s)	3, 221
AseI	ATTAAT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	4, 221
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	260
BccI	CCATC	2 cut(s)	124, 191
BceAI	ACGGC	2 cut(s)	93, 211
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	42, 96, 101
BisI	GCNGC	2 cut(s)	43, 224
BlsI	GCNGC	2 cut(s)	44, 225
Bme1390I	CCNGG	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgBI	CACGTC	2 cut(s)	95, 144
BmgT120I	GGNCC	2 cut(s)	4, 221
BmiI	GGNNCC	2 cut(s)	6, 19
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	83
BsaAI	YACGTR	2 cut(s)	25, 260
BsaHI	GRCGYC	2 cut(s)	34, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 121
Bse1I	ACTGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	14, 121
BseMII	CTCAG	2 cut(s)	29, 117
BseNI	ACTGG	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	5, 223
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	14, 121
BsmAI	GTCTC	3 cut(s)	42, 96, 101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	5, 223
Bsp119I	TTCGAA	1 cut(s)	351
BspACI	CCGC	2 cut(s)	43, 224
BspANI	GGCC	2 cut(s)	5, 223
BspCNI	CTCAG	2 cut(s)	30, 118
BspDI	ATCGAT	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	6, 19
BspT104I	TTCGAA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	56
BssNI	GRCGYC	2 cut(s)	34, 69
Bst4CI	ACNGT	4 cut(s)	90, 121, 272, 327
BstACI	GRCGYC	2 cut(s)	34, 69
BstBAI	YACGTR	2 cut(s)	25, 260
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	38, 126
BstHHI	GCGC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	42, 96, 101
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 229
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	5, 223
BsuTUI	ATCGAT	1 cut(s)	83
BtrI	CACGTC	2 cut(s)	95, 144
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	4, 221
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	2 cut(s)	42, 58
CviAII	CATG	3 cut(s)	193, 214, 386
CviJI	RGCY	5 cut(s)	5, 42, 125, 223, 276
CviKI_1	RGCY	5 cut(s)	5, 42, 125, 223, 276
DdeI	CTNAG	2 cut(s)	38, 126
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	3 cut(s)	196, 217, 389
FaiI	YATR	8 cut(s)	170, 194, 204, 215, 242, 266, 336, 387
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	192, 213, 385
FblI	GTMKAC	2 cut(s)	291, 303
Fnu4HI	GCNGC	2 cut(s)	43, 224
Fsp4HI	GCNGC	2 cut(s)	43, 224
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	43, 224
HaeIII	GGCC	2 cut(s)	5, 223
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	2 cut(s)	42, 58
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	34, 69
Hin1II	CATG	3 cut(s)	196, 217, 389
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	298, 304
HindII	GTYRAC	2 cut(s)	298, 304
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	4 cut(s)	257, 292, 298, 304
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	4 cut(s)	257, 292, 298, 304
Hpy99I	CGWCG	3 cut(s)	36, 74, 305
HpyCH4III	ACNGT	4 cut(s)	90, 121, 272, 327
HpyCH4IV	ACGT	6 cut(s)	24, 94, 143, 259, 294, 300
HpyCH4V	TGCA	5 cut(s)	138, 159, 247, 315, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 229
HpyF3I	CTNAG	2 cut(s)	38, 126
HpySE526I	ACGT	6 cut(s)	24, 94, 143, 259, 294, 300
Hsp92I	GRCGYC	2 cut(s)	34, 69
Hsp92II	CATG	3 cut(s)	196, 217, 389
HspAI	GCGC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	37, 50, 78, 128, 264, 331
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	6 cut(s)	24, 94, 143, 259, 294, 300
MaeIII	GTNAC	3 cut(s)	73, 90, 233
MluCI	AATT	2 cut(s)	353, 360
MlyI	GAGTC	1 cut(s)	119
MseI	TTAA	3 cut(s)	329, 359, 391
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	42, 229
NciI	CCSGG	1 cut(s)	66
NlaIII	CATG	3 cut(s)	196, 217, 389
NlaIV	GGNNCC	2 cut(s)	6, 19
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	389
NspV	TTCGAA	1 cut(s)	351
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 300
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	44, 225
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	2 cut(s)	25, 260
PshBI	ATTAAT	1 cut(s)	359
PspCI	CACGTG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	6, 19
PspPI	GGNCC	2 cut(s)	4, 221
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	329, 359, 391
SatI	GCNGC	2 cut(s)	43, 224
Sau96I	GGNCC	2 cut(s)	4, 221
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	8 cut(s)	27, 97, 146, 262, 278, 297, 303, 350
SfaNI	GCATC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	351
Sse9I	AATT	2 cut(s)	353, 360
SsiI	CCGC	2 cut(s)	43, 224
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	4 cut(s)	90, 121, 272, 327
TaiI	ACGT	6 cut(s)	27, 97, 146, 262, 297, 303
TaqI	TCGA	5 cut(s)	83, 108, 186, 303, 351
TasI	AATT	2 cut(s)	353, 360
TauI	GCSGC	2 cut(s)	45, 226
Tru1I	TTAA	3 cut(s)	329, 359, 391
Tru9I	TTAA	3 cut(s)	329, 359, 391
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	181, 202, 336
TspGWI	ACGGA	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	359
XceI	RCATGY	1 cut(s)	389
XmiI	GTMKAC	2 cut(s)	291, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.