Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005552.1

Orthogroup ID

OG0011591

Physical Location & Seq

Genomic Coordinates Forward (+)

23453 .. 24677

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005552.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggccccaagcgacgtaaaccgagactggacggaacttccggccgtcattacggcgtcgatactgtcacgtcttggaaacattgaatccttgacggtggctgagatggtatgcaagacgtggcgtgaaatctgcaaagaccctatgctgtggcgcaccatcgacttcatgaacaaccatacaagcttcatgttcgggccgacgttgagttacgatgtagtgaagatgtgccgccgtgccatacaccgtagctccggtagttttgtctacatcaacgtcgactacttttgcgacaatgaactgttaaagtatatcactaacagttcagctggatttattagacacctcagtttgttcaattgtggcattataaatgacgcggtgttgtgtgaagcagctccgagacttcgagttttggaggaacttgacatttcgatgtgcaaattctccaatatagctatacaaatagttgggctctgctgccctcttttgaaatcattcaaatttaacaaccggaacggaagaaggtcttccaggcagtattatagggacgaggatgcagttgctatatcagcaaccatgcatggtttactcctccttgagatccgtaggaatgagctgactttcaatggcttggcaaaaattcttgattgttgtcctcaactcgggatccttgatttgcgcgagtgtaaaaacctgaaacttatgagcagagatttggaaaccagatgtgttgaaagaattaagaagttgtggctcccgatcgatccctctgatccctctagtatatcggacttgaatttggtgggcaaaccatgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

274

Amino Acids

31.26

Weight (kDa)

8.17

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13800
rosa_chinensis	RchiOBHm_Chr1g0331921 RchiOBHm_Chr1g0353851 RchiOBHm_Chr1g0353901 RchiOBHm_Chr1g0353931
rosa_laevigata	RLG00000028245 RLG00000028249
rosa_multiflora	Rmu_sc0000523.1_g000002 Rmu_sc0005552.1_g000002 Rmu_sc0005552.1_g000005 Rmu_sc0007658.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301450 Rroxscaffold_4G00301480 Rroxscaffold_4G00301530
rosa_rugosa	Rorug01G0239300
rosa_samantha	Rh1BG222400 Rh1CG233600 Rh1DG248600 Rh1DG249200
rosa_wichuraiana	Rw1G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	2 cut(s)	267, 279
AccII	CGCG	2 cut(s)	380, 684
AciI	CCGC	2 cut(s)	232, 380
AclWI	GGATC	5 cut(s)	598, 664, 677, 761, 770
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	4 cut(s)	443, 503, 642, 799
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	7 cut(s)	86, 358, 493, 502, 628, 737, 799
AjiI	CACGTC	2 cut(s)	71, 120
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	6 cut(s)	186, 252, 329, 398, 458, 619
AluI	AGCT	6 cut(s)	186, 252, 329, 398, 458, 619
Alw26I	GTCTC	2 cut(s)	18, 397
AlwI	GGATC	5 cut(s)	598, 664, 677, 761, 770
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	3 cut(s)	3, 42, 197
ApeKI	GCWGC	2 cut(s)	395, 480
ApoI	RAATTY	4 cut(s)	443, 503, 642, 799
Asp700I	GAANNNNTTC	2 cut(s)	497, 529
AspLEI	GCGC	2 cut(s)	156, 684
AspS9I	GGNCC	2 cut(s)	4, 197
AvaI	CYCGRG	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	2 cut(s)	407, 467
BccI	CCATC	2 cut(s)	100, 167
BceAI	ACGGC	3 cut(s)	29, 69, 219
BciT130I	CCWGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	18, 397
BfaI	CTAG	1 cut(s)	783
BisI	GCNGC	3 cut(s)	232, 396, 481
BlsI	GCNGC	3 cut(s)	233, 397, 482
Bme1390I	CCNGG	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	2 cut(s)	71, 120
BmgT120I	GGNCC	2 cut(s)	4, 197
BmiI	GGNNCC	3 cut(s)	6, 671, 758
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	620
Bsa29I	ATCGAT	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	56
BsaWI	WCCGGW	2 cut(s)	254, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	765
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	2 cut(s)	93, 361
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	584
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	407, 467
Bsh1236I	CGCG	2 cut(s)	380, 684
Bsh1285I	CGRYCG	2 cut(s)	45, 765
BshFI	GGCC	3 cut(s)	5, 44, 199
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	2 cut(s)	45, 765
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	41, 255, 514
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	18, 397
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	5, 44, 199
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	603, 669, 762, 766, 775
BspACI	CCGC	2 cut(s)	232, 380
BspANI	GGCC	3 cut(s)	5, 44, 199
BspCNI	CTCAG	2 cut(s)	94, 360
BspDI	ATCGAT	1 cut(s)	765
BspFNI	CGCG	2 cut(s)	380, 684
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	6, 671, 758
BspPI	GGATC	5 cut(s)	598, 664, 677, 761, 770
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	5 cut(s)	603, 669, 762, 766, 775
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	5 cut(s)	66, 97, 248, 303, 323
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	102, 347
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	2 cut(s)	380, 684
BstHHI	GCGC	2 cut(s)	156, 684
BstKTI	GATC	5 cut(s)	606, 672, 765, 769, 778
BstMAI	GTCTC	2 cut(s)	18, 397
BstMBI	GATC	5 cut(s)	603, 669, 762, 766, 775
BstMCI	CGRYCG	2 cut(s)	45, 765
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstUI	CGCG	2 cut(s)	380, 684
BstV1I	GCAGC	2 cut(s)	407, 467
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	603, 669
BstYI	RGATCY	2 cut(s)	603, 669
BstZI	CGGCCG	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	5, 44, 199
BsuTUI	ATCGAT	1 cut(s)	765
BtrI	CACGTC	2 cut(s)	71, 120
BtsCI	GGATG	1 cut(s)	562
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	156, 684
Cfr13I	GGNCC	2 cut(s)	4, 197
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	2 cut(s)	45, 386
CviAII	CATG	5 cut(s)	169, 190, 580, 584, 816
DdeI	CTNAG	2 cut(s)	102, 347
DpnI	GATC	5 cut(s)	605, 671, 764, 768, 777
DpnII	GATC	5 cut(s)	603, 669, 762, 766, 775
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	477
Eco52I	CGGCCG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	533
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	5 cut(s)	172, 193, 583, 587, 819
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	5 cut(s)	168, 189, 579, 583, 815
FblI	GTMKAC	2 cut(s)	267, 279
Fnu4HI	GCNGC	3 cut(s)	232, 396, 481
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	3 cut(s)	232, 396, 481
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	2 cut(s)	155, 683
GluI	GCNGC	3 cut(s)	232, 396, 481
HaeIII	GGCC	3 cut(s)	5, 44, 199
HapII	CCGG	3 cut(s)	41, 255, 514
HgaI	GACGC	2 cut(s)	45, 386
HhaI	GCGC	2 cut(s)	156, 684
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	172, 193, 583, 587, 819
Hin6I	GCGC	2 cut(s)	154, 682
HinP1I	GCGC	2 cut(s)	154, 682
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	3 cut(s)	41, 255, 514
Hpy166II	GTNNAC	4 cut(s)	19, 268, 280, 590
Hpy188I	TCNGA	3 cut(s)	402, 775, 793
Hpy188III	TCNNGA	4 cut(s)	169, 647, 667, 760
Hpy8I	GTNNAC	4 cut(s)	19, 268, 280, 590
Hpy99I	CGWCG	4 cut(s)	17, 61, 205, 281
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	5 cut(s)	66, 97, 248, 303, 323
HpyCH4IV	ACGT	5 cut(s)	15, 70, 119, 203, 276
HpyCH4V	TGCA	5 cut(s)	114, 135, 441, 560, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	102, 347
HpySE526I	ACGT	5 cut(s)	15, 70, 119, 203, 276
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	172, 193, 583, 587, 819
HspAI	GCGC	2 cut(s)	154, 682
Kzo9I	GATC	5 cut(s)	603, 669, 762, 766, 775
LmnI	GCTCC	3 cut(s)	257, 403, 762
LpnPI	CCDG	9 cut(s)	13, 54, 268, 315, 520, 527, 547, 710, 739
Lsp1109I	GCAGC	2 cut(s)	407, 467
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	5 cut(s)	15, 70, 119, 203, 276
MaeIII	GTNAC	2 cut(s)	66, 209
MalI	GATC	5 cut(s)	605, 671, 764, 768, 777
MboI	GATC	5 cut(s)	603, 669, 762, 766, 775
MboII	GAAGA	3 cut(s)	235, 522, 534
MfeI	CAATTG	1 cut(s)	358
MflI	RGATCY	2 cut(s)	603, 669
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
MnlI	CCTC	8 cut(s)	356, 412, 495, 547, 605, 669, 781, 790
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	2 cut(s)	497, 529
MseI	TTAA	4 cut(s)	305, 507, 744, 823
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	41, 255, 514
MspR9I	CCNGG	1 cut(s)	535
MunI	CAATTG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	2 cut(s)	380, 684
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	5 cut(s)	603, 669, 762, 766, 775
NlaIII	CATG	5 cut(s)	172, 193, 583, 587, 819
NlaIV	GGNNCC	3 cut(s)	6, 671, 758
NmuCI	GTSAC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	585
PagI	TCATGA	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	497, 529
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	233, 397, 482
Ple19I	CGATCG	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	6, 671, 758
PspPI	GGNCC	2 cut(s)	4, 197
PsuI	RGATCY	2 cut(s)	603, 669
PvuI	CGATCG	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	305, 507, 744, 823
SatI	GCNGC	3 cut(s)	232, 396, 481
Sau3AI	GATC	5 cut(s)	603, 669, 762, 766, 775
Sau96I	GGNCC	2 cut(s)	4, 197
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
SsiI	CCGC	2 cut(s)	232, 380
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	5 cut(s)	66, 97, 248, 303, 323
TaiI	ACGT	5 cut(s)	18, 73, 122, 206, 279
TaqI	TCGA	6 cut(s)	59, 162, 279, 409, 434, 765
TasI	AATT	6 cut(s)	358, 443, 503, 642, 741, 799
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	305, 507, 744, 823
Tru9I	TTAA	4 cut(s)	305, 507, 744, 823
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	2 cut(s)	395, 480
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	4 cut(s)	157, 178, 185, 312
TspGWI	ACGGA	3 cut(s)	47, 534, 596
XapI	RAATTY	4 cut(s)	443, 503, 642, 799
XmiI	GTMKAC	2 cut(s)	267, 279
XmnI	GAANNNNTTC	2 cut(s)	497, 529
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.