RLG00000028245

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011591
Physical Location & Seq
Forward (+)
20531890 .. 20533129
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028245

Sequence Viewer

Length: 702 bp
ATGGCCCCAAGAGTTGGAACCCACGTAAAACGACGCCTGAGCCGCCAAGACTGGACTGAACTTCCAGGCGTCGTTACGGCGTCGATACTGTCACGTCTCGGAGACATCGAGTCCCTGACGGTGGCTGAGATGGTGTGCAAGACGTGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAGCAACCATACAAAGTTCATGTTCGGGCCGCCGTTGCGTTACGACGCAGTGAAGATGTGCCGCCGCGCCATACACCGTAGCTCCGGTATTTTTGTCTATGTCAACGTCGACTACTTTTGCAACAATGAACTGTTAAATAGAGCTCTACATGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGGAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGAGACAATTCTTGATTGTTGTCCTCAACTCGAGATCCTTGATTTGCGCAAGTGTCAAAACCTGAGATATATGAGCACAGAGTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATTGATCCCTCTAGTATATCGGACTTGAATTTGGTGGGCAAACCATGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

234

Amino Acids

26.88

Weight (kDa)

9.02

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 64 1.4e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 303
AccII CGCG 2 cut(s) 261, 642
AciI CCGC 6 cut(s) 43, 224, 256, 259, 640, 642
AclWI GGATC 3 cut(s) 478, 544, 647
AcsI RAATTY 2 cut(s) 383, 676
AcyI GRCGYC 3 cut(s) 34, 69, 80
AfiI CCNNNNNNNGG 2 cut(s) 14, 121
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 4 cut(s) 373, 382, 617, 676
AhdI GACNNNNNGTC 1 cut(s) 109
AjiI CACGTC 2 cut(s) 95, 144
AjnI CCWGG 2 cut(s) 64, 413
AluBI AGCT 3 cut(s) 276, 338, 499
AluI AGCT 3 cut(s) 276, 338, 499
Alw21I GWGCWC 2 cut(s) 340, 593
Alw26I GTCTC 3 cut(s) 96, 101, 512
AlwI GGATC 3 cut(s) 478, 544, 647
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 3 cut(s) 3, 221, 643
ApeKI GCWGC 2 cut(s) 357, 360
ApoI RAATTY 2 cut(s) 383, 676
Asp700I GAANNNNTTC 2 cut(s) 377, 409
AspLEI GCGC 4 cut(s) 180, 263, 357, 564
AspS9I GGNCC 3 cut(s) 4, 221, 644
AvaI CYCGRG 1 cut(s) 545
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 340, 593
BbvI GCAGC 2 cut(s) 344, 347
BccI CCATC 2 cut(s) 124, 191
BceAI ACGGC 2 cut(s) 93, 211
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 2 cut(s) 66, 415
BcoDI GTCTC 3 cut(s) 96, 101, 512
BfaI CTAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 7 cut(s) 43, 224, 256, 259, 358, 361, 643
BlsI GCNGC 7 cut(s) 44, 225, 257, 260, 359, 362, 644
Bme1390I CCNGG 2 cut(s) 66, 415
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 545
BmgBI CACGTC 2 cut(s) 95, 144
BmgT120I GGNCC 3 cut(s) 4, 221, 644
BmiI GGNNCC 4 cut(s) 6, 19, 457, 638
BmrFI CCNGG 2 cut(s) 66, 415
BmsI GCATC 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 25
BsaHI GRCGYC 3 cut(s) 34, 69, 80
BsaJI CCNNGG 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 121
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 2 cut(s) 66, 415
BseDI CCNNGG 1 cut(s) 640
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 14, 121
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 3 cut(s) 29, 117, 569
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 344, 347
Bsh1236I CGCG 2 cut(s) 261, 642
BshFI GGCC 3 cut(s) 5, 223, 645
BsiHKAI GWGCWC 2 cut(s) 340, 593
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 14, 121
BsmAI GTCTC 3 cut(s) 96, 101, 512
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 5, 223, 645
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 340, 593
Bsp143I GATC 3 cut(s) 483, 549, 652
BspACI CCGC 6 cut(s) 43, 224, 256, 259, 640, 642
BspANI GGCC 3 cut(s) 5, 223, 645
BspCNI CTCAG 3 cut(s) 30, 118, 570
BspFNI CGCG 2 cut(s) 261, 642
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 4 cut(s) 6, 19, 457, 638
BspPI GGATC 3 cut(s) 478, 544, 647
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 640
BssMI GATC 3 cut(s) 483, 549, 652
BssNI GRCGYC 3 cut(s) 34, 69, 80
Bst2UI CCWGG 2 cut(s) 66, 415
Bst4CI ACNGT 4 cut(s) 90, 121, 272, 327
BstACI GRCGYC 3 cut(s) 34, 69, 80
BstBAI YACGTR 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 38, 126, 578
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 2 cut(s) 261, 642
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 4 cut(s) 180, 263, 357, 564
BstKTI GATC 3 cut(s) 486, 552, 655
BstMAI GTCTC 3 cut(s) 96, 101, 512
BstMBI GATC 3 cut(s) 483, 549, 652
BstMWI GCNNNNNNNGC 2 cut(s) 42, 229
BstNI CCWGG 2 cut(s) 66, 415
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 64, 413
BstUI CGCG 2 cut(s) 261, 642
BstV1I GCAGC 2 cut(s) 344, 347
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 483, 549
BstYI RGATCY 2 cut(s) 483, 549
BsuRI GGCC 3 cut(s) 5, 223, 645
BtgI CCRYGG 1 cut(s) 640
BtrI CACGTC 2 cut(s) 95, 144
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 192
CfoI GCGC 4 cut(s) 180, 263, 357, 564
Cfr13I GGNCC 3 cut(s) 4, 221, 644
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 4 cut(s) 42, 58, 69, 248
CviAII CATG 6 cut(s) 193, 214, 344, 460, 464, 693
DdeI CTNAG 3 cut(s) 38, 126, 578
DpnI GATC 3 cut(s) 485, 551, 654
DpnII GATC 3 cut(s) 483, 549, 652
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 64, 413
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 6 cut(s) 196, 217, 347, 463, 467, 696
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 97
FatI CATG 6 cut(s) 192, 213, 343, 459, 463, 692
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 7 cut(s) 43, 224, 256, 259, 358, 361, 643
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 7 cut(s) 43, 224, 256, 259, 358, 361, 643
FspBI CTAG 1 cut(s) 660
FspI TGCGCA 1 cut(s) 563
GlaI GCGC 4 cut(s) 179, 262, 356, 563
GluI GCNGC 7 cut(s) 43, 224, 256, 259, 358, 361, 643
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 3 cut(s) 5, 223, 645
HapII CCGG 1 cut(s) 279
HgaI GACGC 4 cut(s) 42, 58, 69, 248
HhaI GCGC 4 cut(s) 180, 263, 357, 564
Hin1I GRCGYC 3 cut(s) 34, 69, 80
Hin1II CATG 6 cut(s) 196, 217, 347, 463, 467, 696
Hin6I GCGC 4 cut(s) 178, 261, 355, 562
HinP1I GCGC 4 cut(s) 178, 261, 355, 562
HincII GTYRAC 2 cut(s) 298, 304
HindII GTYRAC 2 cut(s) 298, 304
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 3 cut(s) 298, 304, 470
Hpy188I TCNGA 2 cut(s) 101, 670
Hpy188III TCNNGA 4 cut(s) 193, 453, 527, 547
Hpy8I GTNNAC 3 cut(s) 298, 304, 470
Hpy99I CGWCG 6 cut(s) 36, 74, 85, 242, 305, 434
HpyCH4III ACNGT 4 cut(s) 90, 121, 272, 327
HpyCH4IV ACGT 4 cut(s) 24, 94, 143, 300
HpyCH4V TGCA 6 cut(s) 138, 159, 315, 440, 463, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 229
HpyF3I CTNAG 3 cut(s) 38, 126, 578
HpySE526I ACGT 4 cut(s) 24, 94, 143, 300
Hsp92I GRCGYC 3 cut(s) 34, 69, 80
Hsp92II CATG 6 cut(s) 196, 217, 347, 463, 467, 696
HspAI GCGC 4 cut(s) 178, 261, 355, 562
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 3 cut(s) 483, 549, 652
LmnI GCTCC 2 cut(s) 281, 642
Lsp1109I GCAGC 2 cut(s) 344, 347
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 660
MaeII ACGT 4 cut(s) 24, 94, 143, 300
MaeIII GTNAC 3 cut(s) 73, 90, 233
MalI GATC 3 cut(s) 485, 551, 654
MboI GATC 3 cut(s) 483, 549, 652
MboII GAAGA 3 cut(s) 259, 402, 414
MflI RGATCY 2 cut(s) 483, 549
MhlI GDGCHC 2 cut(s) 340, 593
MluCI AATT 4 cut(s) 383, 522, 621, 676
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 5 cut(s) 375, 427, 485, 549, 667
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 2 cut(s) 377, 409
MseI TTAA 4 cut(s) 329, 387, 624, 700
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 66, 415
MvaI CCWGG 2 cut(s) 66, 415
MvnI CGCG 2 cut(s) 261, 642
MwoI GCNNNNNNNGC 2 cut(s) 42, 229
NdeII GATC 3 cut(s) 483, 549, 652
NlaIII CATG 6 cut(s) 196, 217, 347, 463, 467, 696
NlaIV GGNNCC 4 cut(s) 6, 19, 457, 638
NmuCI GTSAC 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 545
PagI TCATGA 1 cut(s) 192
PciI ACATGT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 377, 409
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 7 cut(s) 44, 225, 257, 260, 359, 362, 644
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 25
PscI ACATGT 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 64, 413
PspGI CCWGG 2 cut(s) 64, 413
PspN4I GGNNCC 4 cut(s) 6, 19, 457, 638
PspPI GGNCC 3 cut(s) 4, 221, 644
PsuI RGATCY 2 cut(s) 483, 549
SacI GAGCTC 1 cut(s) 340
SacII CCGCGG 1 cut(s) 643
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 4 cut(s) 329, 387, 624, 700
SatI GCNGC 7 cut(s) 43, 224, 256, 259, 358, 361, 643
Sau3AI GATC 3 cut(s) 483, 549, 652
Sau96I GGNCC 3 cut(s) 4, 221, 644
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 66, 415
SduI GDGCHC 2 cut(s) 340, 593
SetI ASST 8 cut(s) 27, 97, 146, 278, 303, 340, 501, 579
SfaNI GCATC 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 545
Sfr303I CCGCGG 1 cut(s) 643
SgrBI CCGCGG 1 cut(s) 643
SlaI CTCGAG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 479, 545
SmoI CTYRAG 2 cut(s) 479, 545
Sse9I AATT 4 cut(s) 383, 522, 621, 676
SsiI CCGC 6 cut(s) 43, 224, 256, 259, 640, 642
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 64, 413
TaaI ACNGT 4 cut(s) 90, 121, 272, 327
TaiI ACGT 4 cut(s) 27, 97, 146, 303
TaqI TCGA 5 cut(s) 83, 108, 186, 303, 546
TasI AATT 4 cut(s) 383, 522, 621, 676
TauI GCSGC 5 cut(s) 45, 226, 258, 261, 645
Tru1I TTAA 4 cut(s) 329, 387, 624, 700
Tru9I TTAA 4 cut(s) 329, 387, 624, 700
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 2 cut(s) 357, 360
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 181, 202, 336
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 14
XapI RAATTY 2 cut(s) 383, 676
XceI RCATGY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 2 cut(s) 377, 409
XspI CTAG 1 cut(s) 660
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.