FvH4_7g24910

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004472
Physical Location & Seq
Reverse (-)
19124753 .. 19125268
516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24910.t1

Sequence Viewer

Length: 516 bp
ATGGCAAGCAAGCAACTCATCCTCGTCGCGTCGTCTTTCCTCCTCATTGCATTGGCCTTGTCCCCATCCGCCAATGCACACCCTCCGAAGCCGGAAGTGCATGTGGTTGTGGAAGGCATGGTGTACTGCCAGAGCTGTGACTACCGTGGATGGTCCTTAACCGGGGCCAAATCACTCCCTTTGGCTAAAGTCAGTGTTGTCTGTAAAAACAACATAGGCCAAGTTGGCTACTACAAGACTTTCCAAGCAAATGCTAACGGCTATGTGTATGCTGAACTAGAAGGCAACAAAATGAACCGTGCATTGGACTATCCCCTTCAGAATTGCAAAGTGAAGCTAGTTTCTTCTCCACTTCAAAAGTGCAACCTTGCCACCAATGTCAATTTCGGCCTTGATGGAGCGCATCTCCGGTCTGAAGGCAAGAGTTACACGAGTCCGAATTATAATGCTGTCATATATGCTGCAGGGCCTTTTGCTTTCCGTCCTGCACATTGCCCTTACACCACTCACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

172

Amino Acids

18.58

Weight (kDa)

9.12

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 37 - 133 5.3e-23 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 302, 435
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 162, 304
AgsI TTSAA 1 cut(s) 356
AjuI GAANNNNNNNTTGG 4 cut(s) 287, 319, 368, 400
AluBI AGCT 2 cut(s) 135, 337
AluI AGCT 2 cut(s) 135, 337
AoxI GGCC 5 cut(s) 54, 165, 217, 388, 467
ApeKI GCWGC 1 cut(s) 461
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 153, 165, 467
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 153
BauI CACGAG 1 cut(s) 430
BbvI GCAGC 1 cut(s) 448
BccI CCATC 3 cut(s) 73, 144, 389
BceAI ACGGC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 2 cut(s) 278, 338
BfmI CTRYAG 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 153, 165, 467
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 412
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 145, 162
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 304
Bse3DI GCAATG 2 cut(s) 45, 490
BseDI CCNNGG 2 cut(s) 145, 162
BseGI GGATG 3 cut(s) 18, 65, 155
BseLI CCNNNNNNNGG 2 cut(s) 162, 304
BseMI GCAATG 2 cut(s) 45, 490
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 5 cut(s) 56, 167, 219, 390, 469
BsiSI CCGG 3 cut(s) 92, 162, 409
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 162, 304
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 5 cut(s) 56, 167, 219, 390, 469
BspACI CCGC 1 cut(s) 69
BspANI GGCC 5 cut(s) 56, 167, 219, 390, 469
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 466
BsrDI GCAATG 2 cut(s) 45, 490
BssECI CCNNGG 2 cut(s) 145, 162
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 146, 299
BstC8I GCNNGC 2 cut(s) 7, 11
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 3 cut(s) 18, 65, 155
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 403
BstMWI GCNNNNNNNGC 2 cut(s) 97, 225
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 448
BsuRI GGCC 5 cut(s) 56, 167, 219, 390, 469
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 3 cut(s) 18, 65, 155
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 7, 11
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 153, 165, 467
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 101, 118
CviQI GTAC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 302, 435
EcoO109I RGGNCCY 1 cut(s) 467
FaeI CATG 2 cut(s) 104, 121
FaiI YATR 9 cut(s) 102, 119, 215, 264, 270, 444, 455, 457, 459
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 100, 117
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 3 cut(s) 5, 52, 162
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 2 cut(s) 278, 338
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 462
HaeIII GGCC 5 cut(s) 56, 167, 219, 390, 469
HapII CCGG 3 cut(s) 92, 162, 409
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 403
Hin1II CATG 2 cut(s) 104, 121
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 1 cut(s) 433
HpaII CCGG 3 cut(s) 92, 162, 409
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 4 cut(s) 87, 321, 415, 438
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 29, 34
HpyAV CCTTC 4 cut(s) 107, 275, 326, 410
HpyCH4III ACNGT 2 cut(s) 146, 299
HpyCH4V TGCA 8 cut(s) 50, 77, 100, 302, 327, 363, 464, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 225
Hsp92II CATG 2 cut(s) 104, 121
HspAI GCGC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 6 cut(s) 105, 143, 175, 422, 450, 498
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 412
MaeI CTAG 2 cut(s) 278, 338
MaeIII GTNAC 2 cut(s) 137, 425
MboII GAAGA 1 cut(s) 336
MluCI AATT 3 cut(s) 322, 382, 439
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 4 cut(s) 32, 50, 53, 93
MseI TTAA 1 cut(s) 158
MspI CCGG 3 cut(s) 92, 162, 409
MspR9I CCNGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 97, 225
NciI CCSGG 1 cut(s) 163
NlaIII CATG 2 cut(s) 104, 121
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 104
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PsiI TTATAA 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 3 cut(s) 153, 165, 467
PstI CTGCAG 1 cut(s) 466
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 462
Sau96I GGNCC 3 cut(s) 153, 165, 467
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 137, 339, 369
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 153
Sse9I AATT 3 cut(s) 322, 382, 439
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 278, 338
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 146, 299
TasI AATT 3 cut(s) 322, 382, 439
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 278, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.