Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004472

Physical Location & Seq

Genomic Coordinates Forward (+)

7331878 .. 7334385

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGAGCAAGCAACACATCCTCATCGCGTCATCTTTCCTCCTCATCGCATTGGCCTTCTTCCCTTCCACAACCGCCACCGCATACCCTTCCAAGCCCGAAGTGCATGTGGTTGTGGAAGGCATGGTCTACTGCCAGAGATGTGACTACAGTGGATGGTCTTTAACTGGAGCTACACCACTCCCTTCGGCTAAAGTCAGCGTTGTGTGCAAAAACAACATAGGCCAAGTTGGTTACTACAAGACTTTCCAAGCAAATGCTAATGGCTATGTGTATGCTGAGCTAGAAGGCAACAAAATGAACCGTGTATTGGATTATCCCCTTCAGAATTGCCTAGTGAAGTTAGTCTCTTCTCCTCTTCAGAAATGCAACCTTGCTACCAATGTCAACTTCGGCCTTGATGGAGCGCATCTCCGGTCTGAAGGAAAGAGTCACACAAGTCTGAATTACAAGGCTGTCATATATGCCGCAGGGCCTTTTGCTTTCCACATGGCAAGCAGGAAGCTTTTCGTTGTCGTCTCATCCCTCCTCCTCATCTCATTGGCATCCTTCCCTTCCATAACTGCCACCACATACCAGCCAAAGGCCGCTGTGCATGTGGTTGTGGAAGGCATGGTATACTGCCAGAGCTGTGACTACCGTGGATGGTCCTTGACCGGAGCTACCCCACTCCCTTTGGCTAAAGTCAGCGTCGTTTGCAAAAACAACATAGGCCAAGTCGGTTACTACAAGACTTTCCAAGCAAACGCTAACGGCTACGTGTATGCTGAGCTAGAAGGCAACAAAATGAACCGTGCATTGGACTATCCCCTTCAGAACTGCAGAGTGAAGCTAGTTTCTTCTCCACTTCAAAAGTGCAACCTTGCCACCAATGTCAATTATGGCATTGATGGCGCCCATCTTCGTTCCGAAGGCAAGAGTTACACGAGTCCGAATTATAATGCTGTCATATATGCTGCAGGGCCCTTTGCTTTCCGTCCTTCTCGTTGTCCTTTCACTACCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

336

Amino Acids

36.64

Weight (kDa)

9.24

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	39 - 135	1.1e-22	Pollen protein Ole e 1 like
Pollen_Ole_e_1	PF01190	202 - 298	2e-23	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05500
fragaria_vesca	FvH4_7g24910 FvH4_7g24940
malus_domestica	MD01G1156800.v1.1 MD07G1225500.v1.1
prunus_persica	Prupe.2G254300_v2.0.a1 Prupe.2G254400_v2.0.a1
pyrus_communis	pycom07g20420
rosa_chinensis	RchiOBHm_Chr1g0370791 RchiOBHm_Chr1g0370801 RchiOBHm_Chr1g0370811
rosa_laevigata	RLG00000027006 RLG00000027008 RLG00000027009
rosa_multiflora	Rmu_sc0009474.1_g000005 Rmu_sc0009474.1_g000007 Rmu_sc0009474.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286210 Rroxscaffold_4G00286220
rosa_rugosa	Rorug01G0359800 Rorug01G0359900 Rorug01G0359900
rosa_samantha	Rh1AG368900 Rh1AG369000 Rh1AG369100 Rh1BG332600 Rh1BG332700 Rh1CG346400 Rh1DG363900 Rh1DG364000
rosa_wichuraiana	Rw1G032480 Rw1G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AccB1I	GGYRCC	1 cut(s)	893
AccI	GTMKAC	2 cut(s)	129, 618
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	75, 81, 468, 588
AcuI	CTGAAG	4 cut(s)	308, 344, 441, 797
AcyI	GRCGYC	1 cut(s)	894
AfiI	CCNNNNNNNGG	3 cut(s)	310, 583, 799
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	1 cut(s)	851
AjuI	GAANNNNNNNTTGG	6 cut(s)	293, 325, 374, 406, 782, 814
AluBI	AGCT	7 cut(s)	173, 283, 505, 630, 662, 772, 832
AluI	AGCT	7 cut(s)	173, 283, 505, 630, 662, 772, 832
Alw26I	GTCTC	2 cut(s)	352, 523
AoxI	GGCC	7 cut(s)	54, 223, 394, 473, 585, 712, 962
ApaI	GGGCCC	1 cut(s)	966
ApeKI	GCWGC	1 cut(s)	956
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	409, 896
AspS9I	GGNCC	4 cut(s)	473, 648, 962, 963
AvaII	GGWCC	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	966
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	966
BauI	CACGAG	1 cut(s)	925
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	5 cut(s)	150, 395, 639, 884, 906
BceAI	ACGGC	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	352, 523
BfaI	CTAG	4 cut(s)	284, 335, 773, 833
BfmI	CTRYAG	3 cut(s)	148, 820, 957
BfoI	RGCGCY	1 cut(s)	897
BisI	GCNGC	3 cut(s)	468, 588, 957
BlpI	GCTNAGC	2 cut(s)	279, 768
BlsI	GCNGC	3 cut(s)	469, 589, 958
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	4 cut(s)	473, 648, 962, 963
BmiI	GGNNCC	2 cut(s)	895, 964
BmsI	GCATC	2 cut(s)	418, 554
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	189
Bpu1102I	GCTNAGC	2 cut(s)	279, 768
BsaAI	YACGTR	1 cut(s)	760
BsaHI	GRCGYC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	640
BsaWI	WCCGGW	2 cut(s)	414, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 583, 799
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	5 cut(s)	18, 161, 521, 545, 650
BseLI	CCNNNNNNNGG	3 cut(s)	310, 583, 799
BseMII	CTCAG	2 cut(s)	270, 759
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	4 cut(s)	32, 345, 518, 521
BseSI	GKGCMC	1 cut(s)	966
BseXI	GCAGC	1 cut(s)	943
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	56, 225, 396, 475, 587, 714, 964
BshNI	GGYRCC	1 cut(s)	893
BsiSI	CCGG	2 cut(s)	415, 657
BslI	CCNNNNNNNGG	3 cut(s)	310, 583, 799
BsmAI	GTCTC	2 cut(s)	352, 523
BsmBI	CGTCTC	1 cut(s)	523
BsnI	GGCC	7 cut(s)	56, 225, 396, 475, 587, 714, 964
Bsp120I	GGGCCC	1 cut(s)	962
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp1720I	GCTNAGC	2 cut(s)	279, 768
BspACI	CCGC	4 cut(s)	75, 81, 468, 588
BspANI	GGCC	7 cut(s)	56, 225, 396, 475, 587, 714, 964
BspCNI	CTCAG	2 cut(s)	271, 760
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	895, 964
BspMAI	CTGCAG	2 cut(s)	824, 961
BspT107I	GGYRCC	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	640
BssNAI	GTATAC	1 cut(s)	619
BssNI	GRCGYC	1 cut(s)	894
BssSI	CACGAG	1 cut(s)	925
Bst1107I	GTATAC	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	925
Bst4CI	ACNGT	4 cut(s)	152, 305, 641, 794
Bst6I	CTCTTC	2 cut(s)	355, 363
BstACI	GRCGYC	1 cut(s)	894
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	7, 11, 496
BstDEI	CTNAG	2 cut(s)	279, 768
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	5 cut(s)	18, 161, 521, 545, 650
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	2 cut(s)	409, 896
BstMAI	GTCTC	2 cut(s)	352, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 207, 696, 891
BstNSI	RCATGY	2 cut(s)	110, 599
BstSFI	CTRYAG	3 cut(s)	148, 820, 957
BstSLI	GKGCMC	1 cut(s)	966
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	943
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	7 cut(s)	56, 225, 396, 475, 587, 714, 964
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	2 cut(s)	10, 31
BtsCI	GGATG	5 cut(s)	18, 161, 521, 545, 650
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	7, 11, 496
CfoI	GCGC	2 cut(s)	409, 896
Cfr13I	GGNCC	4 cut(s)	473, 648, 962, 963
CseI	GACGC	2 cut(s)	18, 679
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	5 cut(s)	107, 124, 490, 596, 613
DdeI	CTNAG	2 cut(s)	279, 768
DinI	GGCGCC	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	355, 363
EarI	CTCTTC	2 cut(s)	355, 363
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	4 cut(s)	308, 344, 441, 797
EcoO109I	RGGNCCY	3 cut(s)	473, 962, 963
EcoT38I	GRGCYC	1 cut(s)	966
EgeI	GGCGCC	1 cut(s)	895
EheI	GGCGCC	1 cut(s)	895
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	5 cut(s)	110, 127, 493, 599, 616
FatI	CATG	5 cut(s)	106, 123, 489, 595, 612
FblI	GTMKAC	2 cut(s)	129, 618
Fnu4HI	GCNGC	3 cut(s)	468, 588, 957
FokI	GGATG	5 cut(s)	5, 168, 508, 532, 657
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	3 cut(s)	468, 588, 957
FspBI	CTAG	4 cut(s)	284, 335, 773, 833
GlaI	GCGC	2 cut(s)	408, 895
GluI	GCNGC	3 cut(s)	468, 588, 957
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	7 cut(s)	56, 225, 396, 475, 587, 714, 964
HapII	CCGG	2 cut(s)	415, 657
HgaI	GACGC	2 cut(s)	18, 679
HhaI	GCGC	2 cut(s)	409, 896
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	5 cut(s)	110, 127, 493, 599, 616
Hin6I	GCGC	2 cut(s)	407, 894
HinP1I	GCGC	2 cut(s)	407, 894
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	430, 928
HpaII	CCGG	2 cut(s)	415, 657
Hpy166II	GTNNAC	3 cut(s)	130, 388, 619
Hpy188I	TCNGA	7 cut(s)	327, 363, 421, 444, 816, 910, 933
Hpy8I	GTNNAC	3 cut(s)	130, 388, 619
Hpy99I	CGWCG	1 cut(s)	695
HpyCH4III	ACNGT	4 cut(s)	152, 305, 641, 794
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	9 cut(s)	106, 210, 369, 595, 699, 797, 822, 858, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 207, 696, 891
HpyF3I	CTNAG	2 cut(s)	279, 768
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	5 cut(s)	110, 127, 493, 599, 616
HspAI	GCGC	2 cut(s)	407, 894
KasI	GGCGCC	1 cut(s)	893
LmnI	GCTCC	3 cut(s)	170, 404, 659
LpnPI	CCDG	9 cut(s)	149, 153, 428, 456, 484, 590, 638, 670, 945
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	2 cut(s)	418, 554
MaeI	CTAG	4 cut(s)	284, 335, 773, 833
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	6 cut(s)	143, 233, 431, 632, 722, 920
MboII	GAAGA	5 cut(s)	52, 342, 350, 831, 893
MhlI	GDGCHC	1 cut(s)	966
MluCI	AATT	4 cut(s)	328, 445, 877, 934
Mly113I	GGCGCC	1 cut(s)	894
MlyI	GAGTC	2 cut(s)	439, 937
MnlI	CCTC	7 cut(s)	32, 50, 53, 366, 536, 539, 542
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	2 cut(s)	415, 657
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	103, 207, 696, 891
NarI	GGCGCC	1 cut(s)	894
NlaIII	CATG	5 cut(s)	110, 127, 493, 599, 616
NlaIV	GGNNCC	2 cut(s)	895, 964
NmuCI	GTSAC	3 cut(s)	143, 431, 632
NspI	RCATGY	2 cut(s)	110, 599
PdmI	GAANNNNTTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	469, 589, 958
PleI	GAGTC	2 cut(s)	438, 936
PluTI	GGCGCC	1 cut(s)	897
PpsI	GAGTC	2 cut(s)	438, 936
Ppu21I	YACGTR	1 cut(s)	760
PsiI	TTATAA	1 cut(s)	939
PspN4I	GGNNCC	2 cut(s)	895, 964
PspOMI	GGGCCC	1 cut(s)	962
PspPI	GGNCC	4 cut(s)	473, 648, 962, 963
PstI	CTGCAG	2 cut(s)	824, 961
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	468, 588, 957
Sau96I	GGNCC	4 cut(s)	473, 648, 962, 963
SchI	GAGTC	2 cut(s)	439, 937
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	2 cut(s)	418, 554
SfcI	CTRYAG	3 cut(s)	148, 820, 957
SfoI	GGCGCC	1 cut(s)	895
SinI	GGWCC	1 cut(s)	648
Sse9I	AATT	4 cut(s)	328, 445, 877, 934
SsiI	CCGC	4 cut(s)	75, 81, 468, 588
SspDI	GGCGCC	1 cut(s)	893
SspMI	CTAG	4 cut(s)	284, 335, 773, 833
TaaI	ACNGT	4 cut(s)	152, 305, 641, 794
TaiI	ACGT	1 cut(s)	762
TasI	AATT	4 cut(s)	328, 445, 877, 934
TauI	GCSGC	2 cut(s)	470, 590
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	3 cut(s)	143, 431, 632
TseI	GCWGC	1 cut(s)	956
Tsp45I	GTSAC	3 cut(s)	143, 431, 632
TspDTI	ATGAA	2 cut(s)	314, 803
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	648
XceI	RCATGY	2 cut(s)	110, 599
XmiI	GTMKAC	2 cut(s)	129, 618
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	4 cut(s)	284, 335, 773, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.