Rorug01G0359800

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004472
Physical Location & Seq
Reverse (-)
47562260 .. 47564289
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359800.1

Sequence Viewer

Length: 420 bp
ATGGCAAACGCAGCATCTGGGATGGCTGTGCATGATGACTGCAAGTTGAAGTTCTTAGACTTGAAGGCAAAACGAACTTACCGCTTCATAGTTTACAAGATTGAGGAGAAGCAAAAGCAGGTTGTAGTGGAAAAGCTTGGTGAACCAAGTCAGAGCTACGAGGATTTCTCTGCCTGCCTCCCTGCTGATGAATGCCGATACGCTGTCTATGACTTTGATTATGTGACAGAAGAGAACTGCCAGAAGAGCCGCATTATTTTCATTGCTTGGTCCCCTGACATATCAAGGGTGAGAAGCAAGATGATTTATGCCAGTTCAAAGGACAGGTTCAAGAGAGAGTTGGATGGCATTCAGGTTGAGTTACAAGCTACTGACCCTACTGAGATGGGGCTTGATGTGATTAGAAGCCGTGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

139

Amino Acids

16.06

Weight (kDa)

5.91

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 7 - 138 1.9e-40 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 2 cut(s) 82, 250
AgsI TTSAA 4 cut(s) 49, 64, 318, 331
AluBI AGCT 3 cut(s) 136, 156, 368
AluI AGCT 3 cut(s) 136, 156, 368
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 152, 301
AvaII GGWCC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 16, 338, 379
BceAI ACGGC 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 12, 250
BlsI GCNGC 2 cut(s) 13, 251
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 2 cut(s) 27, 349
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 197, 348
BspACI CCGC 2 cut(s) 82, 250
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 225, 239
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 55, 381
BstF5I GGATG 2 cut(s) 27, 349
BstMWI GCNNNNNNNGC 2 cut(s) 11, 246
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 27, 349
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 1 cut(s) 32
CviJI RGCY 7 cut(s) 26, 136, 156, 249, 368, 391, 408
CviKI_1 RGCY 7 cut(s) 26, 136, 156, 249, 368, 391, 408
DdeI CTNAG 2 cut(s) 55, 381
Eam1104I CTCTTC 2 cut(s) 225, 239
EarI CTCTTC 2 cut(s) 225, 239
Eco47I GGWCC 1 cut(s) 270
FaeI CATG 1 cut(s) 35
FaiI YATR 6 cut(s) 33, 89, 210, 222, 281, 309
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 12, 250
FokI GGATG 2 cut(s) 34, 356
Fsp4HI GCNGC 2 cut(s) 12, 250
GluI GCNGC 2 cut(s) 12, 250
Hin1II CATG 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 134
HphI GGTGA 2 cut(s) 152, 301
Hpy166II GTNNAC 2 cut(s) 94, 143
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 2 cut(s) 94, 143
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 31, 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 246
HpyF3I CTNAG 2 cut(s) 55, 381
Hsp92II CATG 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 3, 104, 187, 195, 254, 288, 310, 325, 338
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 223, 360
MboII GAAGA 2 cut(s) 242, 256
MluCI AATT 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 97, 154, 188
MseI TTAA 1 cut(s) 418
Mva1269I GAATGC 2 cut(s) 197, 348
MwoI GCNNNNNNNGC 2 cut(s) 11, 246
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 239
PctI GAATGC 2 cut(s) 197, 348
PkrI GCNGC 2 cut(s) 13, 251
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 2 cut(s) 12, 250
Sau96I GGNCC 1 cut(s) 270
SetI ASST 6 cut(s) 123, 138, 158, 329, 357, 370
SfaNI GCATC 1 cut(s) 23
SinI GGWCC 1 cut(s) 270
Sse9I AATT 1 cut(s) 415
SsiI CCGC 2 cut(s) 82, 250
TasI AATT 1 cut(s) 415
TauI GCSGC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 76, 204, 250
VpaK11BI GGWCC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.