RchiOBHm_Chr1g0370801

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004472
Physical Location & Seq
Reverse (-)
60216163 .. 60216684
522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59494

Sequence Viewer

Length: 522 bp
ATGGCGAGCAAGCAACTCATCCTCGTTGCGTCATCTTTTCTTCTCATTGCATTGGCCTTCTTCCCTTCCACAACCGCCACCGCATACCCTTCAAAGTCCGAAGTGCATGTGGTTGTGGAAGGCATGGTCTACTGCCAGAGCTGTGACTACAGTGGCTGGTCCTTAACTGGAGCTACACCACTCCCTTCGGCTAAAGTCAGCGTTGTCTGCAAAAACAACATAGGCCAAGTTGGTTACTACAAGACTTTCCAAGCAAATGCTAATGGCTATGTGTATGCTGAGCTAGAAGGCAACAAAATGAACAGTGTAATGGATTATCCCCTTCAGAATTGCCTAGTGAAGTTAGCCTCTTCTCCTCTTCATAAATGCAACCTTGCTACCAATGTCAATTTCGGACTTGATGGAGCGCATCTCCGGTCTGAAGGAAAGAGTCACACAAGTCTGAATTACAAGGCTGTCATATATGCTGCAGGGCCCTTAGCTTTCCGTCCTGCTCATTGCCCTTACACTACTCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.67

Weight (kDa)

8.7

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 39 - 135 3.5e-23 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 75, 81
AcuI CTGAAG 2 cut(s) 308, 441
AgsI TTSAA 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 4 cut(s) 141, 173, 283, 482
AluI AGCT 4 cut(s) 141, 173, 283, 482
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 3 cut(s) 54, 223, 473
ApaI GGGCCC 1 cut(s) 477
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 159, 473, 474
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 395
BfaI CTAG 2 cut(s) 284, 335
BfmI CTRYAG 2 cut(s) 148, 468
BisI GCNGC 1 cut(s) 468
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 159, 473, 474
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 478
Bpu1102I GCTNAGC 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 45, 496
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 2 cut(s) 45, 496
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 3 cut(s) 56, 225, 475
BsiSI CCGG 1 cut(s) 415
BsnI GGCC 3 cut(s) 56, 225, 475
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 477
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 2 cut(s) 75, 81
BspANI GGCC 3 cut(s) 56, 225, 475
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 475
BspMAI CTGCAG 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 45, 496
BsrI ACTGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 152, 305
Bst6I CTCTTC 2 cut(s) 355, 363
BstC8I GCNNGC 2 cut(s) 7, 11
BstDEI CTNAG 2 cut(s) 279, 478
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 148, 468
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 454
BsuRI GGCC 3 cut(s) 56, 225, 475
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 157, 310
Cac8I GCNNGC 2 cut(s) 7, 11
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 159, 473, 474
CseI GACGC 1 cut(s) 18
CviAII CATG 2 cut(s) 107, 124
DdeI CTNAG 2 cut(s) 279, 478
Eam1104I CTCTTC 2 cut(s) 355, 363
EarI CTCTTC 2 cut(s) 355, 363
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 308, 441
EcoO109I RGGNCCY 2 cut(s) 473, 474
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 2 cut(s) 110, 127
FatI CATG 2 cut(s) 106, 123
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 284, 335
GlaI GCGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 3 cut(s) 56, 225, 475
HapII CCGG 1 cut(s) 415
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 110, 127
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 1 cut(s) 430
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 5 cut(s) 100, 327, 395, 421, 444
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 8 cut(s) 67, 75, 99, 113, 195, 281, 332, 416
HpyCH4III ACNGT 2 cut(s) 152, 305
HpyCH4V TGCA 5 cut(s) 50, 106, 210, 369, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 2 cut(s) 279, 478
Hsp92II CATG 2 cut(s) 110, 127
HspAI GCGC 1 cut(s) 407
LmnI GCTCC 2 cut(s) 170, 404
LpnPI CCDG 6 cut(s) 142, 149, 153, 428, 456, 504
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 418
MaeI CTAG 2 cut(s) 284, 335
MaeIII GTNAC 3 cut(s) 143, 233, 431
MboII GAAGA 4 cut(s) 32, 52, 342, 350
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 328, 388, 445
MlyI GAGTC 1 cut(s) 439
MnlI CCTC 3 cut(s) 32, 358, 366
MseI TTAA 2 cut(s) 164, 520
MspI CCGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 2 cut(s) 110, 127
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 2 cut(s) 143, 431
NspI RCATGY 1 cut(s) 110
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 475
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 3 cut(s) 159, 473, 474
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 164, 520
SatI GCNGC 1 cut(s) 468
Sau96I GGNCC 3 cut(s) 159, 473, 474
SchI GAGTC 1 cut(s) 439
SduI GDGCHC 1 cut(s) 477
SetI ASST 5 cut(s) 143, 175, 285, 375, 484
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 2 cut(s) 148, 468
SinI GGWCC 1 cut(s) 159
Sse9I AATT 3 cut(s) 328, 388, 445
SsiI CCGC 2 cut(s) 75, 81
SspMI CTAG 2 cut(s) 284, 335
TaaI ACNGT 2 cut(s) 152, 305
TasI AATT 3 cut(s) 328, 388, 445
Tru1I TTAA 2 cut(s) 164, 520
Tru9I TTAA 2 cut(s) 164, 520
TscAI CASTG 2 cut(s) 157, 310
TseFI GTSAC 2 cut(s) 143, 431
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 143, 431
TspDTI ATGAA 2 cut(s) 314, 350
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 157, 310
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 2 cut(s) 284, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.