Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009474.1

Orthogroup ID

OG0004472

Physical Location & Seq

Genomic Coordinates Reverse (-)

24041 .. 24562

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009474.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggcgagcaagcaactcatcctcgtcgcgtcatcttttcttctcattgcattggccttcttcccttccacaaccgccaccgcatacccttcaaagtccgaagtgcatgtggttgtggaaggcatggtctactgccagagatgtgactacagtggatggtccttaactggagctacaccactcccttcggctaaagtcagcgttgtctgcaaaaacaacataggccaagttggttactacaagactttccaagcaaatgctaatggctatgtgtatgctgagctagaaggcaacaaaatgaacagtgtaatagattatccccttcagaattgcctagtgaagttagtctcttctcctcttcagaaatgcaaccttgctaccaatgtcaatttcggccttgacggagcgcatctccggcctgaaggaaagagtcacacaagtctgaattacaaggctgtcatatatgctgcagggcccttagctttccgtcctgctcattgcccttacactactcaccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.75

Weight (kDa)

8.87

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05500
fragaria_vesca	FvH4_7g24910 FvH4_7g24940
malus_domestica	MD01G1156800.v1.1 MD07G1225500.v1.1
prunus_persica	Prupe.2G254300_v2.0.a1 Prupe.2G254400_v2.0.a1
pyrus_communis	pycom07g20420
rosa_chinensis	RchiOBHm_Chr1g0370791 RchiOBHm_Chr1g0370801 RchiOBHm_Chr1g0370811
rosa_laevigata	RLG00000027006 RLG00000027008 RLG00000027009
rosa_multiflora	Rmu_sc0009474.1_g000005 Rmu_sc0009474.1_g000007 Rmu_sc0009474.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286210 Rroxscaffold_4G00286220
rosa_rugosa	Rorug01G0359800 Rorug01G0359900 Rorug01G0359900
rosa_samantha	Rh1AG368900 Rh1AG369000 Rh1AG369100 Rh1BG332600 Rh1BG332700 Rh1CG346400 Rh1DG363900 Rh1DG364000
rosa_wichuraiana	Rw1G032480 Rw1G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	75, 81
AcuI	CTGAAG	3 cut(s)	308, 344, 441
AgsI	TTSAA	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	3 cut(s)	173, 283, 482
AluI	AGCT	3 cut(s)	173, 283, 482
Alw26I	GTCTC	1 cut(s)	352
AoxI	GGCC	5 cut(s)	54, 223, 394, 416, 473
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	159, 473, 474
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	284, 335
BfmI	CTRYAG	2 cut(s)	148, 468
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	159, 473, 474
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu1102I	GCTNAGC	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	2 cut(s)	45, 496
BseGI	GGATG	2 cut(s)	18, 161
BseMI	GCAATG	2 cut(s)	45, 496
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	5 cut(s)	56, 225, 396, 418, 475
BsiSI	CCGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	5 cut(s)	56, 225, 396, 418, 475
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	75, 81
BspANI	GGCC	5 cut(s)	56, 225, 396, 418, 475
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	45, 496
BsrI	ACTGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	152, 305
Bst6I	CTCTTC	2 cut(s)	355, 363
BstC8I	GCNNGC	2 cut(s)	7, 11
BstDEI	CTNAG	2 cut(s)	279, 478
BstF5I	GGATG	2 cut(s)	18, 161
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 415
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	148, 468
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	454
BsuRI	GGCC	5 cut(s)	56, 225, 396, 418, 475
BtsCI	GGATG	2 cut(s)	18, 161
BtsIMutI	CAGTG	2 cut(s)	157, 310
Cac8I	GCNNGC	2 cut(s)	7, 11
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	159, 473, 474
CseI	GACGC	1 cut(s)	18
CviAII	CATG	2 cut(s)	107, 124
DdeI	CTNAG	2 cut(s)	279, 478
Eam1104I	CTCTTC	2 cut(s)	355, 363
EarI	CTCTTC	2 cut(s)	355, 363
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	308, 344, 441
EcoO109I	RGGNCCY	2 cut(s)	473, 474
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	2 cut(s)	110, 127
FaiI	YATR	9 cut(s)	85, 108, 125, 221, 270, 276, 461, 463, 465
FatI	CATG	2 cut(s)	106, 123
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	5, 168
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	284, 335
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	56, 225, 396, 418, 475
HapII	CCGG	1 cut(s)	415
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	110, 127
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	100, 327, 363, 444
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	8 cut(s)	67, 75, 99, 113, 195, 281, 332, 416
HpyCH4III	ACNGT	2 cut(s)	152, 305
HpyCH4V	TGCA	5 cut(s)	50, 106, 210, 369, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 415
HpyF3I	CTNAG	2 cut(s)	279, 478
Hsp92II	CATG	2 cut(s)	110, 127
HspAI	GCGC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	170, 404
LpnPI	CCDG	6 cut(s)	149, 153, 428, 432, 456, 504
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	284, 335
MaeIII	GTNAC	3 cut(s)	143, 233, 431
MboII	GAAGA	4 cut(s)	32, 52, 342, 350
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	328, 388, 445
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	2 cut(s)	32, 366
MseI	TTAA	2 cut(s)	164, 520
MspI	CCGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	207, 415
NlaIII	CATG	2 cut(s)	110, 127
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	143, 431
NspI	RCATGY	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	159, 473, 474
PstI	CTGCAG	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	164, 520
SatI	GCNGC	1 cut(s)	468
Sau96I	GGNCC	3 cut(s)	159, 473, 474
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	4 cut(s)	175, 285, 375, 484
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	148, 468
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	328, 388, 445
SsiI	CCGC	2 cut(s)	75, 81
SspMI	CTAG	2 cut(s)	284, 335
TaaI	ACNGT	2 cut(s)	152, 305
TasI	AATT	3 cut(s)	328, 388, 445
Tru1I	TTAA	2 cut(s)	164, 520
Tru9I	TTAA	2 cut(s)	164, 520
TscAI	CASTG	2 cut(s)	157, 310
TseFI	GTSAC	2 cut(s)	143, 431
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	143, 431
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	2 cut(s)	417, 476
TspRI	CASTG	2 cut(s)	157, 310
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	284, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.