Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009474.1

Orthogroup ID

OG0004472

Physical Location & Seq

Genomic Coordinates Reverse (-)

29897 .. 30415

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009474.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcaggcaggcagcttatagtcctcgtttcgtccctcctcctcaccgtactcgccttcttcccttccacaacagcgaccgaacatcagaaaaagattgacgtggttgtggaaggcatggtgtactgccagagctgtgatcactccggaacatggtccatgaccggggctaaaccaatcccttcggctaaaatcagtgtcatctgcaagaaccacaaggaccaagtcagcttctacaaggctttccaaacaaatgcggatggctacttctatgcacaccttgatggcttcaaaatgaaccacatgttggaccatcccctccaggcttgccatgtcaagccggtttcttcacctctcgaagactgcaggttgctcagcaacatcaactatggcctctctggagctccacttcgttatgaagacaagagagtgatgggaagcagttatgaagctgtggtgttttctgcagggcctttggcttttcgccctgagtcttgcactccaaaaactcactactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

172

Amino Acids

19.04

Weight (kDa)

8.2

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05500
fragaria_vesca	FvH4_7g24910 FvH4_7g24940
malus_domestica	MD01G1156800.v1.1 MD07G1225500.v1.1
prunus_persica	Prupe.2G254300_v2.0.a1 Prupe.2G254400_v2.0.a1
pyrus_communis	pycom07g20420
rosa_chinensis	RchiOBHm_Chr1g0370791 RchiOBHm_Chr1g0370801 RchiOBHm_Chr1g0370811
rosa_laevigata	RLG00000027006 RLG00000027008 RLG00000027009
rosa_multiflora	Rmu_sc0009474.1_g000005 Rmu_sc0009474.1_g000007 Rmu_sc0009474.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286210 Rroxscaffold_4G00286220
rosa_rugosa	Rorug01G0359800 Rorug01G0359900 Rorug01G0359900
rosa_samantha	Rh1AG368900 Rh1AG369000 Rh1AG369100 Rh1BG332600 Rh1BG332700 Rh1CG346400 Rh1DG363900 Rh1DG364000
rosa_wichuraiana	Rw1G032480 Rw1G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	51, 125
AfiI	CCNNNNNNNGG	3 cut(s)	153, 165, 307
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	321
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	5 cut(s)	16, 135, 231, 404, 452
AluI	AGCT	5 cut(s)	16, 135, 231, 404, 452
Alw21I	GWGCWC	1 cut(s)	406
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	2 cut(s)	391, 470
ApeKI	GCWGC	1 cut(s)	13
AspS9I	GGNCC	4 cut(s)	156, 220, 310, 470
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	37, 342
AvaII	GGWCC	3 cut(s)	156, 220, 310
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	366, 426
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	4 cut(s)	254, 278, 321, 427
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	166
BfmI	CTRYAG	2 cut(s)	364, 465
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	166, 323
Bme18I	GGWCC	3 cut(s)	156, 220, 310
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	4 cut(s)	156, 220, 310, 470
BmrFI	CCNGG	2 cut(s)	166, 323
BpiI	GAAGAC	2 cut(s)	366, 426
BpmI	CTGGAG	2 cut(s)	305, 420
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 165, 307
Bse118I	RCCGGY	1 cut(s)	340
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	265, 313
BseLI	CCNNNNNNNGG	3 cut(s)	153, 165, 307
BseMII	CTCAG	2 cut(s)	388, 480
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	393, 472
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	3 cut(s)	147, 165, 341
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	153, 165, 307
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	393, 472
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	139
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	393, 472
BspCNI	CTCAG	2 cut(s)	387, 481
BspEI	TCCGGA	1 cut(s)	146
BspMAI	CTGCAG	2 cut(s)	368, 469
BspMI	ACCTGC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	7, 11, 328
BstDEI	CTNAG	2 cut(s)	374, 489
BstF5I	GGATG	2 cut(s)	265, 313
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMCI	CGRYCG	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	164, 321
BstSFI	CTRYAG	2 cut(s)	364, 465
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	366, 426
BsuRI	GGCC	2 cut(s)	393, 472
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	265, 313
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	7, 11, 328
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	4 cut(s)	156, 220, 310, 470
Csp6I	GTAC	2 cut(s)	50, 124
CviAII	CATG	5 cut(s)	118, 153, 160, 304, 332
CviQI	GTAC	2 cut(s)	50, 124
DdeI	CTNAG	2 cut(s)	374, 489
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	3 cut(s)	156, 220, 310
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	5 cut(s)	121, 156, 163, 307, 335
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	117, 152, 159, 303, 331
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	2 cut(s)	272, 300
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	2 cut(s)	305, 420
HaeIII	GGCC	2 cut(s)	393, 472
HapII	CCGG	3 cut(s)	147, 165, 341
Hin1II	CATG	5 cut(s)	121, 156, 163, 307, 335
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	3 cut(s)	147, 165, 341
HphI	GGTGA	2 cut(s)	37, 342
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	147, 356, 399
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	67, 75, 107, 192
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	207, 275, 366, 467, 498
HpyF3I	CTNAG	2 cut(s)	374, 489
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	121, 156, 163, 307, 335
Kpn2I	TCCGGA	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	401, 409
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	102
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	52, 339, 371, 431
MhlI	GDGCHC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	35, 47, 50, 53, 329, 363, 404
MroI	TCCGGA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	3 cut(s)	147, 165, 341
MspR9I	CCNGG	2 cut(s)	166, 323
MvaI	CCWGG	1 cut(s)	323
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	5 cut(s)	121, 156, 163, 307, 335
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PscI	ACATGT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	4 cut(s)	156, 220, 310, 470
PstI	CTGCAG	2 cut(s)	368, 469
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	51, 125
RsaNI	GTAC	2 cut(s)	50, 124
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	406
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	4 cut(s)	156, 220, 310, 470
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	166, 323
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	9 cut(s)	18, 105, 137, 233, 282, 355, 371, 406, 454
SfcI	CTRYAG	2 cut(s)	364, 465
SinI	GGWCC	3 cut(s)	156, 220, 310
SmiMI	CAYNNNNRTG	1 cut(s)	282
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	164, 321
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	357
TaqII	GACCGA	1 cut(s)	95
TatI	WGTACW	1 cut(s)	123
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	311, 432, 462
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	156, 220, 310
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.