Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009474.1

Orthogroup ID

OG0004472

Physical Location & Seq

Genomic Coordinates Reverse (-)

17172 .. 17693

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009474.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggcaagcaggaaccttttcgttgtcgtctcatccctcctcctcatctcattggcatccttcccttccataactgccaccacataccagccaaagcccgctgtgcatgtggttgtggaaggcatggtatactgccagagctgtgactaccgtggatggtccttgaccggagctatcccactccctttggctaaagtcagcgtcgtctgcaaaaacaacataggccaagtcggttactacaagactttccaagcaaacgctaacggctacgtgtatgctgagctagaaggtaacaaaatgaaccgtgcattggactatccccttcagaactgcagagtgaagctagtttcttctccacttcaaaagtgcaaccttgccaccaatgtcaattatggcattgatggctcccatcttcgttctgaaggcaagagttacacgagtccgaattataatgctgtcatatatgctgcagggccctttgctttccgtcctgctcgttgtccttacactacccgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.98

Weight (kDa)

9.35

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05500
fragaria_vesca	FvH4_7g24910 FvH4_7g24940
malus_domestica	MD01G1156800.v1.1 MD07G1225500.v1.1
prunus_persica	Prupe.2G254300_v2.0.a1 Prupe.2G254400_v2.0.a1
pyrus_communis	pycom07g20420
rosa_chinensis	RchiOBHm_Chr1g0370791 RchiOBHm_Chr1g0370801 RchiOBHm_Chr1g0370811
rosa_laevigata	RLG00000027006 RLG00000027008 RLG00000027009
rosa_multiflora	Rmu_sc0009474.1_g000005 Rmu_sc0009474.1_g000007 Rmu_sc0009474.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286210 Rroxscaffold_4G00286220
rosa_rugosa	Rorug01G0359800 Rorug01G0359900 Rorug01G0359900
rosa_samantha	Rh1AG368900 Rh1AG369000 Rh1AG369100 Rh1BG332600 Rh1BG332700 Rh1CG346400 Rh1DG363900 Rh1DG364000
rosa_wichuraiana	Rw1G032480 Rw1G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	99, 514
AcuI	CTGAAG	2 cut(s)	308, 441
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	4 cut(s)	141, 173, 283, 343
AluI	AGCT	4 cut(s)	141, 173, 283, 343
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	223, 473
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	159, 473, 474
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	150, 395, 417
BceAI	ACGGC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	284, 344
BfmI	CTRYAG	2 cut(s)	331, 468
BisI	GCNGC	1 cut(s)	468
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	159, 473, 474
BmiI	GGNNCC	3 cut(s)	14, 406, 475
BmsI	GCATC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	32, 56, 161
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	29, 32
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	225, 475
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	225, 475
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	99, 514
BspANI	GGCC	2 cut(s)	225, 475
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	14, 406, 475
BspMAI	CTGCAG	2 cut(s)	335, 472
BssECI	CCNNGG	1 cut(s)	151
BssNAI	GTATAC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	152, 305
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	7, 99
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	32, 56, 161
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 207, 402
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	331, 468
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	225, 475
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	32, 56, 161
Cac8I	GCNNGC	2 cut(s)	7, 99
Cfr13I	GGNCC	3 cut(s)	159, 473, 474
CseI	GACGC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	2 cut(s)	107, 124
DdeI	CTNAG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	308, 441
EcoO109I	RGGNCCY	2 cut(s)	473, 474
EcoT38I	GRGCYC	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	110, 127
FatI	CATG	2 cut(s)	106, 123
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	19, 43, 168
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	284, 344
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	225, 475
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	110, 127
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	327, 421, 444
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	6 cut(s)	70, 75, 113, 281, 332, 416
HpyCH4III	ACNGT	2 cut(s)	152, 305
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	106, 210, 308, 333, 369, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 207, 402
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	110, 127
LmnI	GCTCC	2 cut(s)	170, 410
LpnPI	CCDG	5 cut(s)	101, 149, 181, 456, 504
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	284, 344
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	143, 233, 290, 431
MboII	GAAGA	2 cut(s)	342, 404
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	2 cut(s)	388, 445
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	3 cut(s)	47, 50, 53
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	103, 207, 402
NlaIII	CATG	2 cut(s)	110, 127
NlaIV	GGNNCC	3 cut(s)	14, 406, 475
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	14, 406, 475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	159, 473, 474
PstI	CTGCAG	2 cut(s)	335, 472
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	1 cut(s)	468
Sau96I	GGNCC	3 cut(s)	159, 473, 474
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	8 cut(s)	18, 143, 175, 273, 285, 292, 345, 375
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	2 cut(s)	331, 468
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	388, 445
SsiI	CCGC	2 cut(s)	99, 514
SspMI	CTAG	2 cut(s)	284, 344
TaaI	ACNGT	2 cut(s)	152, 305
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	388, 445
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	284, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.