RchiOBHm_Chr1g0370791

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004472
Physical Location & Seq
Reverse (-)
60209245 .. 60209831
587 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59493

Sequence Viewer

Length: 522 bp
ATGACAAGCAGGAACCTTTTCGTTGTCGTCTCATCCCTCCTCCTCATCTCATTGGCATCCTTCCCTTCCATAACTGCCACCACATACCAGCCAAAGCCCGCTGTGCATGTGGTTGTGGAAGGCATGGTATACTGCCAGAGCTGTGACTACCGTGGATGGTCCTTGACCGGAGCTATCCCACTCCCTTTGGCTAAAGTCAGCGTCGTCTGCAAAAACAACATAGGCCAAGTCGGTTACTACAAGACTTTCCAAGCAAACGCTAACGGCTACGTGTATGCTGAGCTAGAAGGTAACAAAATGAACCGTGCATTGGACTATCCCCTTCAGAACTGCATAGTGAAGCTAGTTTCTTCTCCACTTCAAAAGTGCAACCTTGCCACCAATGTCAATTATGGCATTGATGGCTCCCATCTTCGTTCCGAAGGCAAGAGTTACACGAGTCCGAATTATAATGCTGTCATATATGCTGCAGGGCCCTTTGCTTTCCGTCCTGCTCGTTGTCCTTACACTACCCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

18.97

Weight (kDa)

9.25

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 39 - 135 6.2e-23 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 99, 514
AcuI CTGAAG 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 362
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 4 cut(s) 141, 173, 283, 343
AluI AGCT 4 cut(s) 141, 173, 283, 343
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 2 cut(s) 223, 473
ApaI GGGCCC 1 cut(s) 477
ApeKI GCWGC 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 159, 473, 474
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 436
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 150, 395, 417
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 284, 344
BfmI CTRYAG 1 cut(s) 468
BisI GCNGC 1 cut(s) 468
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 159, 473, 474
BmiI GGNNCC 3 cut(s) 14, 406, 475
BmsI GCATC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 3 cut(s) 32, 56, 161
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 29, 32
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 2 cut(s) 225, 475
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 225, 475
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 477
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 2 cut(s) 99, 514
BspANI GGCC 2 cut(s) 225, 475
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 3 cut(s) 14, 406, 475
BspMAI CTGCAG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 151
BssNAI GTATAC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 436
Bst1107I GTATAC 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 152, 305
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 3 cut(s) 32, 56, 161
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 103, 207, 402
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 454
BstZ17I GTATAC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 225, 475
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 32, 56, 161
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 159, 473, 474
CseI GACGC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 2 cut(s) 107, 124
DdeI CTNAG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 473, 474
EcoT38I GRGCYC 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 110, 127
FatI CATG 2 cut(s) 106, 123
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 19, 43, 168
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 284, 344
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 225, 475
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 110, 127
HinfI GANTC 1 cut(s) 439
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 327, 421, 444
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 6 cut(s) 70, 75, 113, 281, 332, 416
HpyCH4III ACNGT 2 cut(s) 152, 305
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 6 cut(s) 106, 210, 308, 333, 369, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 207, 402
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 110, 127
LmnI GCTCC 2 cut(s) 170, 410
LpnPI CCDG 5 cut(s) 101, 149, 181, 456, 504
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 284, 344
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 143, 233, 290, 431
MboII GAAGA 2 cut(s) 342, 404
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 388, 445
MlyI GAGTC 1 cut(s) 448
MnlI CCTC 3 cut(s) 47, 50, 53
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 103, 207, 402
NlaIII CATG 2 cut(s) 110, 127
NlaIV GGNNCC 3 cut(s) 14, 406, 475
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 271
PsiI TTATAA 1 cut(s) 450
PspN4I GGNNCC 3 cut(s) 14, 406, 475
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 3 cut(s) 159, 473, 474
PstI CTGCAG 1 cut(s) 472
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 1 cut(s) 468
Sau96I GGNCC 3 cut(s) 159, 473, 474
SchI GAGTC 1 cut(s) 448
SduI GDGCHC 1 cut(s) 477
SetI ASST 8 cut(s) 18, 143, 175, 273, 285, 292, 345, 375
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 388, 445
SsiI CCGC 2 cut(s) 99, 514
SspMI CTAG 2 cut(s) 284, 344
TaaI ACNGT 2 cut(s) 152, 305
TaiI ACGT 1 cut(s) 273
TasI AATT 2 cut(s) 388, 445
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 2 cut(s) 284, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.