Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

52592905 .. 52593776

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1221700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATCAAGAATGCTGCAAAGTACACGGATGTTTGGAAGATTAAGAAATTTTCAAAGTTAAAAGATGAATGCTATTACTCCAAACCATTCACCGCAGGGAACCAGAGATGGAAGATAGTGATATATCCCAAGGGAAATAGTACTTCAAAGGGTACCCATCTTTCACTTTACTTAACATTGGCTGATGTAAAAAAGTTACATCCTCGCTCCCAAATCCTTACAAAGATTACCTTGCGCATTGTAGATCAAATGCATCACAAGCTTCATTGTTGTATATCAGGTAATTTTTGGTTCAGCGCTTCCCAAAGGAGTTGGGGTCGGGCGTCATTCATCACACTGGTCACTTTGAATGAGGCAGACGAAGGCTTTTTGATGAACAATACTTGCATAGTGGAGGCAGACGTCACCGTCGTTGCACTTGCTAAAGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

145

Amino Acids

16.4

Weight (kDa)

9.67

Isoelectric Point (pI)

17.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	11 - 135	1.3e-32	MATH domain
MATH	PF00917	14 - 137	4.4e-15	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AatII	GACGTC	1 cut(s)	405
Acc16I	TGCGCA	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AciI	CCGC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	323, 402
AfaI	GTAC	3 cut(s)	23, 142, 154
AfeI	AGCGCT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	54, 147, 349
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Aor51HI	AGCGCT	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	237, 299
AsuHPI	GGTGA	2 cut(s)	82, 397
BanI	GGYRCC	1 cut(s)	152
BccI	CCATC	2 cut(s)	102, 165
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	101, 154
BmsI	GCATC	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	323, 402
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bse1I	ACTGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	34, 199
BseNI	ACTGG	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	152
BsmI	GAATGC	2 cut(s)	16, 74
Bsp143I	GATC	2 cut(s)	3, 244
BspACI	CCGC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	101, 154
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	3, 244
BssNI	GRCGYC	2 cut(s)	323, 402
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	409
BstACI	GRCGYC	2 cut(s)	323, 402
BstF5I	GGATG	2 cut(s)	34, 199
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	237, 299
BstKTI	GATC	2 cut(s)	6, 247
BstMBI	GATC	2 cut(s)	3, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	34, 199
BtsIMutI	CAGTG	1 cut(s)	335
CfoI	GCGC	2 cut(s)	237, 299
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	22, 141, 153
CviJI	RGCY	3 cut(s)	182, 262, 366
CviKI_1	RGCY	3 cut(s)	182, 262, 366
CviQI	GTAC	3 cut(s)	22, 141, 153
DpnI	GATC	2 cut(s)	5, 246
DpnII	GATC	2 cut(s)	3, 244
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	129
Eco47III	AGCGCT	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	4 cut(s)	124, 275, 389, 433
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	41, 186
Fsp4HI	GCNGC	1 cut(s)	15
FspI	TGCGCA	1 cut(s)	236
GlaI	GCGC	2 cut(s)	236, 298
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	300
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	2 cut(s)	237, 299
Hin1I	GRCGYC	2 cut(s)	323, 402
Hin6I	GCGC	2 cut(s)	235, 297
HinP1I	GCGC	2 cut(s)	235, 297
HindIII	AAGCTT	1 cut(s)	260
HphI	GGTGA	2 cut(s)	82, 397
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	17, 253, 387, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	2 cut(s)	323, 402
HspAI	GCGC	2 cut(s)	235, 297
KpnI	GGTACC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 244
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	81, 116, 264, 323
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	195, 340, 403
MalI	GATC	2 cut(s)	5, 246
MboI	GATC	2 cut(s)	3, 244
MboII	GAAGA	2 cut(s)	49, 124
MluCI	AATT	2 cut(s)	47, 283
MnlI	CCTC	3 cut(s)	213, 346, 388
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	3 cut(s)	42, 59, 173
Mva1269I	GAATGC	2 cut(s)	16, 74
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	2 cut(s)	3, 244
NlaIV	GGNNCC	2 cut(s)	101, 154
NmuCI	GTSAC	2 cut(s)	340, 403
NsbI	TGCGCA	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	2 cut(s)	16, 74
PkrI	GCNGC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	101, 154
RsaI	GTAC	3 cut(s)	23, 142, 154
RsaNI	GTAC	3 cut(s)	22, 141, 153
SaqAI	TTAA	3 cut(s)	42, 59, 173
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	3, 244
ScaI	AGTACT	1 cut(s)	142
SetI	ASST	4 cut(s)	233, 264, 283, 405
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	47, 283
SsiI	CCGC	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	405
TasI	AATT	2 cut(s)	47, 283
TatI	WGTACW	2 cut(s)	21, 140
Tru1I	TTAA	3 cut(s)	42, 59, 173
Tru9I	TTAA	3 cut(s)	42, 59, 173
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	340, 403
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	340, 403
TspDTI	ATGAA	4 cut(s)	81, 254, 319, 389
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.