Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

8478283 .. 8480599

Gene Structure 2317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCTAATCGTGGCGGTTCAACCGGTGGCCGCGGTGGCGGAGGCCACAGCCAAGGCCGAGGAAGAGGAAACTCCGGCGGTCAGGCCAGAGGCTCAAGCTACACTCCGGCGCCTGCTCCCAGAAGGGGTTTTTTGTATAAGAAAACGTCTTCTTCATCTACAGATGGTGTCTCTGATTCAAATCCCATTGCTTCTGGATCTGGGGGTTCACAGTTTAGAGTCTCGAAAATGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGAAACTAATGCTGTATCCCAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCATTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTCGAGTTGGTCTTGGGGATGGGATGAGTTCCTCACACAGAGGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCACTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

191

Amino Acids

20.58

Weight (kDa)

9.86

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH	PF00917	75 - 186	2.9e-06	MATH domain
MATH_2	PF22486	91 - 184	5.2e-15	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	15, 31, 33, 39, 78, 423
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	405, 564
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	125, 471
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	21, 180, 520
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	2 cut(s)	99, 359
AluI	AGCT	2 cut(s)	99, 359
Alw26I	GTCTC	2 cut(s)	175, 226
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	5 cut(s)	28, 43, 55, 84, 507
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	405, 564
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	466
AxyI	CCTNAGG	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	158, 477
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	175, 226
BfaI	CTAG	3 cut(s)	309, 410, 570
BfmI	CTRYAG	2 cut(s)	159, 255
BfoI	RGCGCY	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	31, 270, 424
BlsI	GCNGC	3 cut(s)	32, 271, 425
Bme1390I	CCNGG	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	31, 52, 58, 300
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 471
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	315
Bse21I	CCTNAGG	1 cut(s)	278
Bse3DI	GCAATG	2 cut(s)	186, 398
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	31, 52, 58, 300
BseGI	GGATG	2 cut(s)	488, 493
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	125, 471
BseMI	GCAATG	2 cut(s)	186, 398
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	5 cut(s)	30, 45, 57, 86, 509
BshNI	GGYRCC	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	24, 75, 107
BslI	CCNNNNNNNGG	2 cut(s)	125, 471
BsmAI	GTCTC	2 cut(s)	175, 226
BsnI	GGCC	5 cut(s)	30, 45, 57, 86, 509
BsoBI	CYCGRG	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	197, 243, 412, 526
BspACI	CCGC	6 cut(s)	15, 31, 33, 39, 78, 423
BspANI	GGCC	5 cut(s)	30, 45, 57, 86, 509
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	186, 398
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	31, 52, 58, 300
BssMI	GATC	4 cut(s)	197, 243, 412, 526
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	52, 300
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	213, 259, 453
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	114, 274
BstDEI	CTNAG	2 cut(s)	263, 278
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	488, 493
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	4 cut(s)	200, 246, 415, 529
BstMAI	GTCTC	2 cut(s)	175, 226
BstMBI	GATC	4 cut(s)	197, 243, 412, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	159, 255
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	197, 412
BstYI	RGATCY	2 cut(s)	197, 412
Bsu36I	CCTNAGG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	30, 45, 57, 86, 509
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	488, 493
BtsIMutI	CAGTG	3 cut(s)	264, 458, 466
Cac8I	GCNNGC	2 cut(s)	114, 274
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	507
Cfr42I	CCGCGG	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	306
CspAI	ACCGGT	1 cut(s)	23
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	263, 278
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	4 cut(s)	199, 245, 414, 528
DpnII	GATC	4 cut(s)	197, 243, 412, 526
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	52, 300
Eco57I	CTGAAG	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	52, 300
EcoT22I	ATGCAT	1 cut(s)	536
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	52, 300
FaiI	YATR	2 cut(s)	138, 252
Fnu4HI	GCNGC	3 cut(s)	31, 270, 424
FokI	GGATG	2 cut(s)	495, 500
Fsp4HI	GCNGC	3 cut(s)	31, 270, 424
FspBI	CTAG	3 cut(s)	309, 410, 570
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	31, 270, 424
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	5 cut(s)	30, 45, 57, 86, 509
HapII	CCGG	3 cut(s)	24, 75, 107
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	176, 219
HpaII	CCGG	3 cut(s)	24, 75, 107
Hpy166II	GTNNAC	3 cut(s)	209, 396, 449
Hpy188I	TCNGA	3 cut(s)	175, 379, 417
Hpy188III	TCNNGA	4 cut(s)	195, 223, 410, 520
Hpy8I	GTNNAC	3 cut(s)	209, 396, 449
HpyAV	CCTTC	2 cut(s)	117, 374
HpyCH4III	ACNGT	3 cut(s)	213, 259, 453
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	272, 389, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	263, 278
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	110
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
KspI	CCGCGG	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	197, 243, 412, 526
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	3 cut(s)	309, 410, 570
MaeII	ACGT	1 cut(s)	146
MalI	GATC	4 cut(s)	199, 245, 414, 528
MboI	GATC	4 cut(s)	197, 243, 412, 526
MboII	GAAGA	4 cut(s)	75, 141, 144, 238
MflI	RGATCY	2 cut(s)	197, 412
MluCI	AATT	2 cut(s)	405, 564
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	35, 53, 59, 83, 378, 475, 498, 506, 535
Mph1103I	ATGCAT	1 cut(s)	536
MseI	TTAA	3 cut(s)	441, 558, 574
MspA1I	CMGCKG	2 cut(s)	33, 359
MspI	CCGG	3 cut(s)	24, 75, 107
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	4 cut(s)	197, 243, 412, 526
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	32, 271, 425
PleI	GAGTC	1 cut(s)	227
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	197, 412
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	441, 558, 574
SatI	GCNGC	3 cut(s)	31, 270, 424
Sau3AI	GATC	4 cut(s)	197, 243, 412, 526
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	3 cut(s)	101, 149, 361
SfcI	CTRYAG	2 cut(s)	159, 255
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	466
Sfr303I	CCGCGG	1 cut(s)	34
SgrBI	CCGCGG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	94, 466
SmoI	CTYRAG	2 cut(s)	94, 466
Sse9I	AATT	2 cut(s)	405, 564
SsiI	CCGC	6 cut(s)	15, 31, 33, 39, 78, 423
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	3 cut(s)	309, 410, 570
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	2 cut(s)	52, 300
TaaI	ACNGT	3 cut(s)	213, 259, 453
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	224, 467
TasI	AATT	2 cut(s)	405, 564
TauI	GCSGC	2 cut(s)	33, 426
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	441, 558, 574
Tru9I	TTAA	3 cut(s)	441, 558, 574
TscAI	CASTG	3 cut(s)	264, 458, 466
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	3 cut(s)	264, 458, 466
XapI	RAATTY	2 cut(s)	405, 564
XbaI	TCTAGA	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	466
XspI	CTAG	3 cut(s)	309, 410, 570
Zsp2I	ATGCAT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.