Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

10166107 .. 10170783

Gene Structure 4677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1132800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATATATCCCAAGGGAAATAGTACTTCAAAGGGTACTCATTTTGCACCTTACTTAACATTGGCTGATGCAGAAAAGCTACATCCTCGAACCCAAATCCTTACAAAGTTTATCTTGCGCATTGTAGATCAAATGCATCTCAAGCATCATTGTTGTCTACCAGGTACTACTTGGTTCAGCGCTTCCCAAAGGAGCTGGGGTTGGTCCTCATTCGTCACACTGGCCATTTTGAATGAGGCAGACAAGGGGTTTTTGATGAACAATTCTTGCATAGTGGAGGCAGACATCACCGTCCTTGCAATTGCTAAAGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

106

Amino Acids

11.73

Weight (kDa)

8.91

Isoelectric Point (pI)

22.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	1 - 96	2.1e-18	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc16I	TGCGCA	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	222
AfaI	GTAC	3 cut(s)	25, 37, 166
AfeI	AGCGCT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	30, 232
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	79, 195
AluI	AGCT	2 cut(s)	79, 195
Aor51HI	AGCGCT	1 cut(s)	181
AoxI	GGCC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	120, 182
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	58, 145, 154
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	120, 182
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	218
CfoI	GCGC	2 cut(s)	120, 182
Cfr13I	GGNCC	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	24, 36, 165
CviJI	RGCY	4 cut(s)	65, 79, 195, 224
CviKI_1	RGCY	4 cut(s)	65, 79, 195, 224
CviQI	GTAC	3 cut(s)	24, 36, 165
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	204
Eco47III	AGCGCT	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	12
FaiI	YATR	3 cut(s)	7, 272, 316
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FblI	GTMKAC	1 cut(s)	157
FokI	GGATG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	2 cut(s)	119, 181
GsaI	CCCAGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	120, 182
Hin6I	GCGC	2 cut(s)	118, 180
HinP1I	GCGC	2 cut(s)	118, 180
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	47, 71, 136, 270, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HspAI	GCGC	2 cut(s)	118, 180
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	4 cut(s)	147, 174, 181, 206
LweI	GCATC	3 cut(s)	58, 145, 154
MabI	ACCWGGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MfeI	CAATTG	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	262, 300
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	4 cut(s)	96, 217, 229, 271
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	204
RsaI	GTAC	3 cut(s)	25, 37, 166
RsaNI	GTAC	3 cut(s)	24, 36, 165
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	204
ScaI	AGTACT	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	4 cut(s)	52, 81, 166, 197
SexAI	ACCWGGT	1 cut(s)	160
SfaNI	GCATC	3 cut(s)	58, 145, 154
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	262, 300
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	262, 300
TatI	WGTACW	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.