Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

55015 .. 57242

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggcttcctcgaaggttgtttctaggttatcgtcccgatcatcacaaagcctcgggcacaatctcatcaagacatggacggactcctccaaattctcttcactcaaatcgagctttcactcggaggcatgcactacagttcgacctgttactcccacctcaaggttaccagtagaactgagcagcataagatcaatgatgccattacaaagttctgcggctctggcacgatggataagtttttgcagtgacagcagggaattagttcctcaaggcccgctagtttcacgctcatcttcggctaaccctccaaaacacttcagtatgaaagtagagtcgttttcgttactacagaaaacaatgcatagatatgaatcaaaggagtttgaggctggaggatacaagtgggcgagaaatgggaaagaccacatttctctctaccttgaaatggctggattagaggcaattaaggccacactgcatgtattggttgatttcaagttctttttgcttaatcagtataagaagaactacttggttcttgaagaggagaaaaaaaaggagagctactgtttctatcggacgattgttggtggtatggccggttttgatcaacttatctctttgaaagattttacaaatggttatctctatgatgacacatgtgagtttggagtggaggtctttgtttctgaagaaaaaagaagagatagattagggcttgtatccatgttcgataatggtgttatgtacaagcatgtttggaaaattcctaacttttccaaattagatggtccatgtcattcttcggaaccgttccctgctggagatcagaaatattgcgcgtggaaactaatgctgtatcccaagggtactagcaccagtagtgattatctttctctgttcttggtattggataatccagctgtccttcctcctggctctgaagtatttgcagagaaactaatgctgtatcccaagggtactagcaccagtagtgattatctttctctgttcttggtattggataatccagctgtccttcctcctggctctgaagtatttgcagagtttacattgcgaattctagatctgaactgcggcaagcatcattctcttaaaagtaaagttgtcctagctagtgaacagtggttcagtgcctcgagttggtcttggggatgggatgagttccttacacagaaggccaagtttttcaagaaagatcaatgcattgtggaggcagaaatcactattaaaggaatttctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

423

Amino Acids

47.7

Weight (kDa)

8.58

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	845
AciI	CCGC	3 cut(s)	218, 278, 1101
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	4 cut(s)	92, 768, 1083, 1260
AcuI	CTGAAG	4 cut(s)	304, 714, 966, 1077
AfaI	GTAC	3 cut(s)	752, 874, 985
AfiI	CCNNNNNNNGG	3 cut(s)	162, 448, 1167
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	446, 499, 545, 628, 1216
AjnI	CCWGG	2 cut(s)	937, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	5 cut(s)	114, 567, 926, 1037, 1139
AluI	AGCT	5 cut(s)	114, 567, 926, 1037, 1139
Ama87I	CYCGRG	2 cut(s)	53, 1162
AoxI	GGCC	4 cut(s)	274, 471, 600, 1203
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	4 cut(s)	92, 768, 1083, 1260
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	845
AspS9I	GGNCC	2 cut(s)	275, 794
AvaI	CYCGRG	2 cut(s)	53, 1162
AvaII	GGWCC	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	3 cut(s)	225, 785, 1173
BciT130I	CCWGG	2 cut(s)	939, 1050
BciVI	GTATCC	4 cut(s)	392, 736, 873, 984
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	8 cut(s)	24, 281, 876, 987, 1088, 1136, 1140, 1266
BfmI	CTRYAG	2 cut(s)	135, 350
BfuI	GTATCC	4 cut(s)	392, 736, 873, 984
BglII	AGATCT	1 cut(s)	1090
BisI	GCNGC	3 cut(s)	184, 219, 1102
BlsI	GCNGC	3 cut(s)	185, 220, 1103
Bme1390I	CCNGG	2 cut(s)	939, 1050
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	2 cut(s)	53, 1162
BmgT120I	GGNCC	2 cut(s)	275, 794
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	939, 1050
BmsI	GCATC	2 cut(s)	189, 1117
BpmI	CTGGAG	2 cut(s)	414, 846
BpuEI	CTTGAG	2 cut(s)	145, 255
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	52, 867, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 448, 1167
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	3 cut(s)	170, 882, 993
Bse3DI	GCAATG	1 cut(s)	1076
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	939, 1050
BseDI	CCNNGG	3 cut(s)	52, 867, 978
BseGI	GGATG	2 cut(s)	1184, 1189
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	162, 448, 1167
BseMI	GCAATG	1 cut(s)	1076
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	170, 882, 993
BseRI	GAGGAG	2 cut(s)	76, 563
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	4 cut(s)	276, 473, 602, 1205
BsiHKCI	CYCGRG	2 cut(s)	53, 1162
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	162, 448, 1167
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	276, 473, 602, 1205
BsoBI	CYCGRG	2 cut(s)	53, 1162
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
BspACI	CCGC	3 cut(s)	218, 278, 1101
BspANI	GGCC	4 cut(s)	276, 473, 602, 1205
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	1076
BsrFI	RCCGGY	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	170, 882, 993
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	3 cut(s)	52, 867, 978
BssMI	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
BssT1I	CCWWGG	2 cut(s)	867, 978
Bst2UI	CCWGG	2 cut(s)	939, 1050
Bst4CI	ACNGT	4 cut(s)	139, 572, 816, 1149
Bst6I	CTCTTC	3 cut(s)	103, 540, 700
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	130, 278, 1106
BstDEI	CTNAG	1 cut(s)	179
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	1184, 1189
BstFNI	CGCG	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	845
BstKTI	GATC	6 cut(s)	41, 194, 613, 832, 1093, 1225
BstMBI	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 252, 470
BstNI	CCWGG	2 cut(s)	939, 1050
BstNSI	RCATGY	4 cut(s)	132, 485, 666, 761
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	937, 1048
BstSFI	CTRYAG	2 cut(s)	135, 350
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	1090
BsuI	GTATCC	4 cut(s)	392, 736, 873, 984
BsuRI	GGCC	4 cut(s)	276, 473, 602, 1205
BtsCI	GGATG	2 cut(s)	1184, 1189
BtsI	GCAGTG	2 cut(s)	253, 476
BtsIMutI	CAGTG	4 cut(s)	253, 476, 1154, 1162
Cac8I	GCNNGC	3 cut(s)	130, 278, 1106
CfoI	GCGC	1 cut(s)	845
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	275, 794
Csp6I	GTAC	3 cut(s)	751, 873, 984
CviAII	CATG	7 cut(s)	75, 129, 482, 663, 730, 758, 798
CviQI	GTAC	3 cut(s)	751, 873, 984
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	6 cut(s)	40, 193, 612, 831, 1092, 1224
DpnII	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	103, 540, 700
EarI	CTCTTC	3 cut(s)	103, 540, 700
Eco130I	CCWWGG	2 cut(s)	867, 978
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	4 cut(s)	304, 714, 966, 1077
Eco88I	CYCGRG	2 cut(s)	53, 1162
Eco91I	GGTNACC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	1083
EcoRII	CCWGG	2 cut(s)	937, 1048
EcoT14I	CCWWGG	2 cut(s)	867, 978
EcoT22I	ATGCAT	2 cut(s)	366, 1232
ErhI	CCWWGG	2 cut(s)	867, 978
FaeI	CATG	7 cut(s)	78, 132, 485, 666, 733, 761, 801
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	74, 128, 481, 662, 729, 757, 797
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	184, 219, 1102
FokI	GGATG	2 cut(s)	1191, 1196
Fsp4HI	GCNGC	3 cut(s)	184, 219, 1102
FspBI	CTAG	8 cut(s)	24, 281, 876, 987, 1088, 1136, 1140, 1266
GlaI	GCGC	1 cut(s)	844
GluI	GCNGC	3 cut(s)	184, 219, 1102
GsuI	CTGGAG	2 cut(s)	414, 846
HaeIII	GGCC	4 cut(s)	276, 473, 602, 1205
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	1 cut(s)	845
Hin1II	CATG	7 cut(s)	78, 132, 485, 666, 733, 761, 801
Hin6I	GCGC	1 cut(s)	843
HinP1I	GCGC	1 cut(s)	843
HinfI	GANTC	3 cut(s)	83, 335, 374
HpaII	CCGG	1 cut(s)	603
Hpy166II	GTNNAC	2 cut(s)	1074, 1145
Hpy188I	TCNGA	8 cut(s)	124, 582, 694, 811, 834, 946, 1057, 1095
Hpy188III	TCNNGA	5 cut(s)	36, 70, 542, 1088, 1216
Hpy8I	GTNNAC	2 cut(s)	1074, 1145
HpyAV	CCTTC	4 cut(s)	7, 941, 1052, 1195
HpyCH4III	ACNGT	4 cut(s)	139, 572, 816, 1149
HpyCH4V	TGCA	7 cut(s)	132, 246, 364, 481, 956, 1067, 1230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 252, 470
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	7 cut(s)	78, 132, 485, 666, 733, 761, 801
HspAI	GCGC	1 cut(s)	843
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	189, 1117
MaeI	CTAG	8 cut(s)	24, 281, 876, 987, 1088, 1136, 1140, 1266
MaeIII	GTNAC	4 cut(s)	148, 165, 248, 345
MalI	GATC	6 cut(s)	40, 193, 612, 831, 1092, 1224
MboI	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
MboII	GAAGA	7 cut(s)	90, 288, 538, 557, 707, 717, 798
MflI	RGATCY	1 cut(s)	1090
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	92, 260, 465, 768, 785, 1083, 1260
MlyI	GAGTC	2 cut(s)	77, 344
Mph1103I	ATGCAT	2 cut(s)	366, 1232
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	5 cut(s)	468, 513, 1119, 1254, 1270
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	926, 1037
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	2 cut(s)	939, 1050
MvaI	CCWGG	2 cut(s)	939, 1050
MvnI	CGCG	1 cut(s)	845
MwoI	GCNNNNNNNGC	3 cut(s)	224, 252, 470
NdeII	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
NlaIII	CATG	7 cut(s)	78, 132, 485, 666, 733, 761, 801
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	2 cut(s)	366, 1232
NspI	RCATGY	4 cut(s)	132, 485, 666, 761
PaeI	GCATGC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	1162
PciI	ACATGT	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	185, 220, 1103
PleI	GAGTC	2 cut(s)	77, 343
PpsI	GAGTC	2 cut(s)	77, 343
PscI	ACATGT	1 cut(s)	662
Psp6I	CCWGG	2 cut(s)	937, 1048
PspEI	GGTNACC	1 cut(s)	165
PspGI	CCWGG	2 cut(s)	937, 1048
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	2 cut(s)	275, 794
PspXI	VCTCGAGB	1 cut(s)	1162
PsuI	RGATCY	1 cut(s)	1090
PvuII	CAGCTG	2 cut(s)	926, 1037
RsaI	GTAC	3 cut(s)	752, 874, 985
RsaNI	GTAC	3 cut(s)	751, 873, 984
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	5 cut(s)	468, 513, 1119, 1254, 1270
SatI	GCNGC	3 cut(s)	184, 219, 1102
Sau3AI	GATC	6 cut(s)	38, 191, 610, 829, 1090, 1222
Sau96I	GGNCC	2 cut(s)	275, 794
SchI	GAGTC	2 cut(s)	77, 344
ScrFI	CCNGG	2 cut(s)	939, 1050
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	2 cut(s)	189, 1117
SfcI	CTRYAG	2 cut(s)	135, 350
Sfr274I	CTCGAG	1 cut(s)	1162
SinI	GGWCC	1 cut(s)	794
SlaI	CTCGAG	1 cut(s)	1162
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	3 cut(s)	160, 270, 1162
SmoI	CTYRAG	3 cut(s)	160, 270, 1162
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	7 cut(s)	92, 260, 465, 768, 785, 1083, 1260
SsiI	CCGC	3 cut(s)	218, 278, 1101
SspI	AATATT	1 cut(s)	839
SspMI	CTAG	8 cut(s)	24, 281, 876, 987, 1088, 1136, 1140, 1266
StyD4I	CCNGG	2 cut(s)	937, 1048
StyI	CCWWGG	2 cut(s)	867, 978
TaaI	ACNGT	4 cut(s)	139, 572, 816, 1149
TaqI	TCGA	5 cut(s)	11, 110, 142, 735, 1163
TasI	AATT	7 cut(s)	92, 260, 465, 768, 785, 1083, 1260
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	2 cut(s)	221, 1104
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	5 cut(s)	468, 513, 1119, 1254, 1270
Tru9I	TTAA	5 cut(s)	468, 513, 1119, 1254, 1270
TscAI	CASTG	4 cut(s)	253, 483, 1154, 1162
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	341, 387
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	4 cut(s)	253, 483, 1154, 1162
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	4 cut(s)	92, 768, 1083, 1260
XbaI	TCTAGA	1 cut(s)	1087
XceI	RCATGY	4 cut(s)	132, 485, 666, 761
XhoI	CTCGAG	1 cut(s)	1162
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	8 cut(s)	24, 281, 876, 987, 1088, 1136, 1140, 1266
Zsp2I	ATGCAT	2 cut(s)	366, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.