Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

54966512 .. 54969013

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTTCCTCGAAGGTTGTTTCTAGGTTATCGTCCCGATCATCACAAAGCCTCGGGCACAATCTCATCAAGACATGGACGGACTCCTCCAAATTCTCTTCACTCAAATCGAGCTTTCACTCGGAGGCATGCACTACAGTTCGACCTGTTGCTCCCACCTCAAGGTTACCAGTAGAACCGAGCAGCATAAGATCAATGATGCCATTACAAAGTTCTGCAGCTCTGGCACGATGGATAAGTTTTTGCAGTGACAGCAGGGAATTAGTTCCTCAAGGCCCGCTAGTTTCACGCTCATCTTCGGCTAACCCTCCAAAACACTTCAGTATGAAAGTAGAGTCGTTTTCGTTACTACAGAAAACAATGGATAGATATGAATCAAAGGAGTTTGAGGCTGGAGGATACAAGTGGAAACTATTGCTCTTCCCAAATGGAAACAGGGCGAGAAATGGGAAAGGCCACATTTCTCTCTACCTTGAAATGGCTGGATTAGAGGCAATTAAGGCCACACTGCATGTATTGGTTGATTTCAAGTTCTTTTTGCTTAATCAGTATAAGAAGAACTACTTGGTTCTTGAAGAGGAGAAAAAAAAGGAGAGGTACTGTTTCTATCGGACGATTGTTGGTGGTATGGCCGGTTTTGATCAACTTATCTGTTTGAAAGATTTTACAAATGGTTATCTCTATGATGACACATGTGAGTTTGGAGTGGAGGTATTTGTTTCTGAAGAAAAAAGAAGAGATAGATTAGGGCTTGTATCCATGTTCGATAATGGTGTTATGTACAAGCATGTTTGGAAAATTCCTAACTTTTCCAAATTAGATGGTCCATGTCATTCTTCAGAACCGTTCCCTGCTGGAGATCAGAAATATTGCGCGTGGAAACTAATGCTGTATCCCAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCATTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTCGAGTTGGTCTTGGGGATGGGATGAGTTCCTTACACAGAAGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCACTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

390

Amino Acids

44.23

Weight (kDa)

8.95

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	106 - 238	1.1e-25	MATH domain
MATH	PF00917	112 - 239	5.8e-09	MATH domain
MATH_2	PF22486	262 - 383	1.5e-23	MATH domain
MATH	PF00917	268 - 385	2.6e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	875
AciI	CCGC	2 cut(s)	278, 1020
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	4 cut(s)	92, 798, 1002, 1161
AcuI	CTGAAG	4 cut(s)	304, 744, 822, 996
AfaI	GTAC	3 cut(s)	599, 782, 904
AfiI	CCNNNNNNNGG	3 cut(s)	162, 478, 1068
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	5 cut(s)	476, 529, 575, 658, 1117
AjnI	CCWGG	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	3 cut(s)	114, 221, 956
AluI	AGCT	3 cut(s)	114, 221, 956
Ama87I	CYCGRG	2 cut(s)	53, 1063
AoxI	GGCC	5 cut(s)	274, 454, 501, 630, 1104
ApeKI	GCWGC	2 cut(s)	183, 218
ApoI	RAATTY	4 cut(s)	92, 798, 1002, 1161
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	875
AspS9I	GGNCC	2 cut(s)	275, 824
AvaI	CYCGRG	2 cut(s)	53, 1063
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	195, 230
BccI	CCATC	3 cut(s)	225, 815, 1074
BciT130I	CCWGG	1 cut(s)	969
BciVI	GTATCC	3 cut(s)	392, 766, 903
BclI	TGATCA	1 cut(s)	640
BfaI	CTAG	5 cut(s)	24, 281, 906, 1007, 1167
BfmI	CTRYAG	3 cut(s)	135, 216, 350
BfuI	GTATCC	3 cut(s)	392, 766, 903
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	3 cut(s)	184, 219, 1021
BlsI	GCNGC	3 cut(s)	185, 220, 1022
Bme1390I	CCNGG	1 cut(s)	969
Bme18I	GGWCC	1 cut(s)	824
BmeT110I	CYCGRG	2 cut(s)	53, 1063
BmgT120I	GGNCC	2 cut(s)	275, 824
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	414, 876
BpuEI	CTTGAG	2 cut(s)	145, 255
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	52, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 478, 1068
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	170, 912
Bse3DI	GCAATG	1 cut(s)	995
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	2 cut(s)	52, 897
BseGI	GGATG	2 cut(s)	1085, 1090
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	162, 478, 1068
BseMI	GCAATG	1 cut(s)	995
BseNI	ACTGG	2 cut(s)	170, 912
BseRI	GAGGAG	2 cut(s)	76, 593
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	195, 230
Bsh1236I	CGCG	1 cut(s)	875
BshFI	GGCC	5 cut(s)	276, 456, 503, 632, 1106
BsiHKCI	CYCGRG	2 cut(s)	53, 1063
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	162, 478, 1068
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	5 cut(s)	276, 456, 503, 632, 1106
BsoBI	CYCGRG	2 cut(s)	53, 1063
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
BspACI	CCGC	2 cut(s)	278, 1020
BspANI	GGCC	5 cut(s)	276, 456, 503, 632, 1106
BspFNI	CGCG	1 cut(s)	875
BspMAI	CTGCAG	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	170, 912
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	52, 897
BssMI	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	4 cut(s)	139, 602, 846, 1050
Bst6I	CTCTTC	4 cut(s)	103, 425, 570, 730
BstAUI	TGTACA	1 cut(s)	780
BstC8I	GCNNGC	2 cut(s)	130, 278
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	1085, 1090
BstFNI	CGCG	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	875
BstKTI	GATC	6 cut(s)	41, 194, 643, 862, 1012, 1126
BstMBI	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 252, 500
BstNI	CCWGG	1 cut(s)	969
BstNSI	RCATGY	4 cut(s)	132, 515, 696, 791
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	967
BstSFI	CTRYAG	3 cut(s)	135, 216, 350
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	875
BstV1I	GCAGC	2 cut(s)	195, 230
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BsuI	GTATCC	3 cut(s)	392, 766, 903
BsuRI	GGCC	5 cut(s)	276, 456, 503, 632, 1106
BtsCI	GGATG	2 cut(s)	1085, 1090
BtsI	GCAGTG	2 cut(s)	253, 506
BtsIMutI	CAGTG	4 cut(s)	253, 506, 1055, 1063
Cac8I	GCNNGC	2 cut(s)	130, 278
CfoI	GCGC	1 cut(s)	875
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	275, 824
Csp6I	GTAC	3 cut(s)	598, 781, 903
CviAII	CATG	7 cut(s)	75, 129, 512, 693, 760, 788, 828
CviQI	GTAC	3 cut(s)	598, 781, 903
DpnI	GATC	6 cut(s)	40, 193, 642, 861, 1011, 1125
DpnII	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	4 cut(s)	103, 425, 570, 730
EarI	CTCTTC	4 cut(s)	103, 425, 570, 730
Eco130I	CCWWGG	1 cut(s)	897
Eco47I	GGWCC	1 cut(s)	824
Eco57I	CTGAAG	4 cut(s)	304, 744, 822, 996
Eco88I	CYCGRG	2 cut(s)	53, 1063
Eco91I	GGTNACC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	1002
EcoRII	CCWGG	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	897
EcoT22I	ATGCAT	1 cut(s)	1133
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	7 cut(s)	78, 132, 515, 696, 763, 791, 831
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	74, 128, 511, 692, 759, 787, 827
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	3 cut(s)	184, 219, 1021
FokI	GGATG	2 cut(s)	1092, 1097
Fsp4HI	GCNGC	3 cut(s)	184, 219, 1021
FspBI	CTAG	5 cut(s)	24, 281, 906, 1007, 1167
GlaI	GCGC	1 cut(s)	874
GluI	GCNGC	3 cut(s)	184, 219, 1021
GsuI	CTGGAG	2 cut(s)	414, 876
HaeIII	GGCC	5 cut(s)	276, 456, 503, 632, 1106
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	1 cut(s)	875
Hin1II	CATG	7 cut(s)	78, 132, 515, 696, 763, 791, 831
Hin6I	GCGC	1 cut(s)	873
HinP1I	GCGC	1 cut(s)	873
HinfI	GANTC	3 cut(s)	83, 335, 374
HpaII	CCGG	1 cut(s)	633
Hpy166II	GTNNAC	2 cut(s)	993, 1046
Hpy188I	TCNGA	7 cut(s)	124, 612, 724, 841, 864, 976, 1014
Hpy188III	TCNNGA	5 cut(s)	36, 70, 572, 1007, 1117
Hpy8I	GTNNAC	2 cut(s)	993, 1046
HpyAV	CCTTC	3 cut(s)	7, 971, 1096
HpyCH4III	ACNGT	4 cut(s)	139, 602, 846, 1050
HpyCH4V	TGCA	6 cut(s)	132, 218, 246, 511, 986, 1131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 252, 500
Hsp92II	CATG	7 cut(s)	78, 132, 515, 696, 763, 791, 831
HspAI	GCGC	1 cut(s)	873
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	2 cut(s)	195, 230
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	5 cut(s)	24, 281, 906, 1007, 1167
MaeIII	GTNAC	3 cut(s)	165, 248, 345
MalI	GATC	6 cut(s)	40, 193, 642, 861, 1011, 1125
MboI	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
MboII	GAAGA	8 cut(s)	90, 288, 412, 568, 587, 737, 747, 828
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	92, 260, 495, 798, 815, 1002, 1161
MlyI	GAGTC	2 cut(s)	77, 344
Mph1103I	ATGCAT	1 cut(s)	1133
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	5 cut(s)	498, 543, 1038, 1155, 1171
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	969
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	875
MwoI	GCNNNNNNNGC	3 cut(s)	224, 252, 500
NdeII	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
NlaIII	CATG	7 cut(s)	78, 132, 515, 696, 763, 791, 831
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	1133
NspI	RCATGY	4 cut(s)	132, 515, 696, 791
PaeI	GCATGC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	1063
PciI	ACATGT	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	185, 220, 1022
PleI	GAGTC	2 cut(s)	77, 343
PpsI	GAGTC	2 cut(s)	77, 343
PscI	ACATGT	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	967
PspEI	GGTNACC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	967
PspPI	GGNCC	2 cut(s)	275, 824
PspXI	VCTCGAGB	1 cut(s)	1063
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	3 cut(s)	599, 782, 904
RsaNI	GTAC	3 cut(s)	598, 781, 903
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	5 cut(s)	498, 543, 1038, 1155, 1171
SatI	GCNGC	3 cut(s)	184, 219, 1021
Sau3AI	GATC	6 cut(s)	38, 191, 640, 859, 1009, 1123
Sau96I	GGNCC	2 cut(s)	275, 824
SchI	GAGTC	2 cut(s)	77, 344
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	3 cut(s)	135, 216, 350
Sfr274I	CTCGAG	1 cut(s)	1063
SinI	GGWCC	1 cut(s)	824
SlaI	CTCGAG	1 cut(s)	1063
SmlI	CTYRAG	3 cut(s)	160, 270, 1063
SmoI	CTYRAG	3 cut(s)	160, 270, 1063
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	7 cut(s)	92, 260, 495, 798, 815, 1002, 1161
SsiI	CCGC	2 cut(s)	278, 1020
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	5 cut(s)	24, 281, 906, 1007, 1167
StyD4I	CCNGG	1 cut(s)	967
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	4 cut(s)	139, 602, 846, 1050
TaqI	TCGA	5 cut(s)	11, 110, 142, 765, 1064
TasI	AATT	7 cut(s)	92, 260, 495, 798, 815, 1002, 1161
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	1 cut(s)	1023
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	5 cut(s)	498, 543, 1038, 1155, 1171
Tru9I	TTAA	5 cut(s)	498, 543, 1038, 1155, 1171
TscAI	CASTG	4 cut(s)	253, 513, 1055, 1063
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	183, 218
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	341, 387
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	4 cut(s)	253, 513, 1055, 1063
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	4 cut(s)	92, 798, 1002, 1161
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	4 cut(s)	132, 515, 696, 791
XhoI	CTCGAG	1 cut(s)	1063
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	5 cut(s)	24, 281, 906, 1007, 1167
Zsp2I	ATGCAT	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.