Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

10178535 .. 10180180

Gene Structure 1646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1133000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTGAATTATAATTCTTGGGTGACTTGTAGATATCTTAATTCATATCCCACATGGATTAAACTTGTGTTTATATTCTTTATAAATATTTACGTGCAGCACTCGCTCTATTCATCGAGTAGAGTTTGCAGGTCATTATATTCTTCTAGTTTAATATCTTTCAGTTTGCAACCTGATCACAATTCCTGCAACGTTCGCTGGCCAATTTTTGTTGCCATGGGTCAAGGTGATGCTTTGTTGTGTTGCCACTATTCAGTTTCAGGGATTTCGAGATCATATTCGGCTTCACCCGCAACTCACTACACTTTAAAATTAGAGTCGTTTTCAATGCTAAAAGAACTTCCAGAGGATCATAGATGTGAATCGGACGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTGGTCTTCCCATATGGAAACAAGAAGAAAAATGTGGGACACCACATCTCTATCAACTTGGAAATGGCTCGAACAGATTCACTTCAGCCTGACTGGGAAGTATATGTTGATTTCAGAGTGTATTTGCTTGATCAGGAAAAGGGAACCTACGTGGTTTTTCAAGATGATAAGATAATGCAAAAGTGCCTTCATGGGGTGGCGCCTGATGTGGGTTTTAATAAACTTATCTCCCTTAAAGAACTTACTGATGCCTCCAATGGATATGTCATTAATGACACCTGTGTGTTTGGAGCGGAGGTCTTTGTTCGTAAAGAAAGAAGAGCAGGCAAGGGAACGTGCATATCAATGATCAAGAATGCTGCAAAGTACACGGATGTTTGGAAGATTAAGAAATTTTCAAAGTTAAAAGATGAATGCTATTACTCCAAACCATTCACCGCAGGGAACCAGAGATGGAAGATAGTGATATATCCCAAGGGAAATAGTACTTCAAAGGGTACCCATCTTTCACTTTACTTAACATTGGCTGATGTAAAAAAAGTTACATCCTCGCTCCCAAATCCTTACAAAAGATTACCTTGCGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

331

Amino Acids

37.8

Weight (kDa)

9.12

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	100 - 234	1.4e-31	MATH domain
MATH	PF00917	108 - 236	6.3e-10	MATH domain
MATH_2	PF22486	260 - 314	2.8e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 83
Acc16I	TGCGCA	1 cut(s)	985
Acc36I	ACCTGC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	899
AccB1I	GGYRCC	2 cut(s)	601, 899
AccBSI	CCGCTC	1 cut(s)	695
AciI	CCGC	3 cut(s)	291, 695, 840
AclI	AACGTT	1 cut(s)	192
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	602
AfaI	GTAC	3 cut(s)	770, 889, 901
AfiI	CCNNNNNNNGG	2 cut(s)	595, 611
AgsI	TTSAA	6 cut(s)	7, 327, 377, 563, 801, 894
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	97, 761
ApoI	RAATTY	1 cut(s)	794
AseI	ATTAAT	1 cut(s)	672
Asp700I	GAANNNNTTC	1 cut(s)	478
Asp718I	GGTACC	1 cut(s)	899
AspLEI	GCGC	2 cut(s)	604, 986
AsuHPI	GGTGA	4 cut(s)	34, 239, 279, 829
BalI	TGGCCA	1 cut(s)	202
BanI	GGYRCC	2 cut(s)	601, 899
BbsI	GAAGAC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	109, 748
BccI	CCATC	2 cut(s)	849, 912
BciVI	GTATCC	1 cut(s)	380
BclI	TGATCA	3 cut(s)	175, 532, 750
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	605
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	98, 762
BlsI	GCNGC	2 cut(s)	99, 763
BmcAI	AGTACT	1 cut(s)	889
BmiI	GGNNCC	4 cut(s)	547, 603, 848, 901
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	220, 640
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	402
BsaAI	YACGTR	2 cut(s)	94, 553
BsaBI	GATNNNNATC	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	216, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 611
Bse1I	ACTGG	2 cut(s)	405, 500
Bse8I	GATNNNNATC	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	216, 876
BseGI	GGATG	2 cut(s)	781, 947
BseJI	GATNNNNATC	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	595, 611
BseNI	ACTGG	2 cut(s)	405, 500
BseXI	GCAGC	2 cut(s)	109, 748
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	601, 899
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	595, 611
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	2 cut(s)	763, 821
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	175, 272, 349, 532, 750
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	291, 695, 840
BspANI	GGCC	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	547, 603, 848, 901
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	601, 899
BsrBI	CCGCTC	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	405, 500
BssECI	CCNNGG	2 cut(s)	216, 876
BssMI	GATC	5 cut(s)	175, 272, 349, 532, 750
BssNI	GRCGYC	1 cut(s)	602
BssT1I	CCWWGG	2 cut(s)	216, 876
Bst6I	CTCTTC	1 cut(s)	715
BstACI	GRCGYC	1 cut(s)	602
BstBAI	YACGTR	2 cut(s)	94, 553
BstC8I	GCNNGC	2 cut(s)	200, 727
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	781, 947
BstH2I	RGCGCY	1 cut(s)	605
BstHHI	GCGC	2 cut(s)	604, 986
BstKTI	GATC	5 cut(s)	178, 275, 352, 535, 753
BstMBI	GATC	5 cut(s)	175, 272, 349, 532, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 195, 290
BstV1I	GCAGC	2 cut(s)	109, 748
BstV2I	GAAGAC	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	781, 947
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	200, 727
CfoI	GCGC	2 cut(s)	604, 986
Csp6I	GTAC	3 cut(s)	769, 888, 900
CviAII	CATG	3 cut(s)	54, 217, 593
CviJI	RGCY	6 cut(s)	202, 284, 380, 470, 490, 929
CviKI_1	RGCY	6 cut(s)	202, 284, 380, 470, 490, 929
CviQI	GTAC	3 cut(s)	769, 888, 900
DinI	GGCGCC	1 cut(s)	603
DpnI	GATC	5 cut(s)	177, 274, 351, 534, 752
DpnII	GATC	5 cut(s)	175, 272, 349, 532, 750
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
Eco130I	CCWWGG	2 cut(s)	216, 876
Eco32I	GATATC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	216, 876
EgeI	GGCGCC	1 cut(s)	603
EheI	GGCGCC	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	216, 876
FaeI	CATG	3 cut(s)	57, 220, 596
FalI	AAGNNNNNCTT	1 cut(s)	964
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	53, 216, 592
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	3 cut(s)	175, 532, 750
Fnu4HI	GCNGC	2 cut(s)	98, 762
FokI	GGATG	2 cut(s)	788, 934
Fsp4HI	GCNGC	2 cut(s)	98, 762
FspBI	CTAG	1 cut(s)	147
FspI	TGCGCA	1 cut(s)	985
GlaI	GCGC	2 cut(s)	603, 985
GluI	GCNGC	2 cut(s)	98, 762
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	202
HhaI	GCGC	2 cut(s)	604, 986
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	3 cut(s)	57, 220, 596
Hin6I	GCGC	2 cut(s)	602, 984
HinP1I	GCGC	2 cut(s)	602, 984
HinfI	GANTC	3 cut(s)	317, 362, 479
HphI	GGTGA	4 cut(s)	34, 239, 279, 829
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	2 cut(s)	367, 518
Hpy188III	TCNNGA	5 cut(s)	270, 344, 536, 563, 754
Hpy8I	GTNNAC	1 cut(s)	771
HpyAV	CCTTC	1 cut(s)	599
HpyCH4IV	ACGT	4 cut(s)	93, 192, 552, 737
HpyCH4V	TGCA	7 cut(s)	97, 129, 169, 189, 580, 741, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 195, 290
HpySE526I	ACGT	4 cut(s)	93, 192, 552, 737
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	3 cut(s)	57, 220, 596
HspAI	GCGC	2 cut(s)	602, 984
KasI	GGCGCC	1 cut(s)	601
KpnI	GGTACC	1 cut(s)	903
Ksp22I	TGATCA	3 cut(s)	175, 532, 750
Kzo9I	GATC	5 cut(s)	175, 272, 349, 532, 750
LguI	GCTCTTC	1 cut(s)	715
LmnI	GCTCC	2 cut(s)	692, 960
Lsp1109I	GCAGC	2 cut(s)	109, 748
LweI	GCATC	2 cut(s)	220, 640
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	4 cut(s)	93, 192, 552, 737
MaeIII	GTNAC	2 cut(s)	22, 943
MalI	GATC	5 cut(s)	177, 274, 351, 534, 752
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	5 cut(s)	175, 272, 349, 532, 750
MboII	GAAGA	6 cut(s)	135, 400, 439, 732, 796, 871
MlsI	TGGCCA	1 cut(s)	202
MluCI	AATT	7 cut(s)	7, 13, 40, 181, 204, 311, 794
MluNI	TGGCCA	1 cut(s)	202
Mly113I	GGCGCC	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	5 cut(s)	340, 377, 664, 691, 961
Mox20I	TGGCCA	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	202
MslI	CAYNNNNRTG	3 cut(s)	357, 683, 746
Msp20I	TGGCCA	1 cut(s)	202
Mva1269I	GAATGC	2 cut(s)	763, 821
MwoI	GCNNNNNNNGC	3 cut(s)	103, 195, 290
NarI	GGCGCC	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	5 cut(s)	175, 272, 349, 532, 750
NlaIII	CATG	3 cut(s)	57, 220, 596
NlaIV	GGNNCC	4 cut(s)	547, 603, 848, 901
NmuCI	GTSAC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	985
OliI	CACNNNNGTG	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	715
PctI	GAATGC	2 cut(s)	763, 821
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	362, 479
PkrI	GCNGC	2 cut(s)	99, 763
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	2 cut(s)	94, 553
PshBI	ATTAAT	1 cut(s)	672
PsiI	TTATAA	2 cut(s)	12, 83
Psp1406I	AACGTT	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	547, 603, 848, 901
RsaI	GTAC	3 cut(s)	770, 889, 901
RsaNI	GTAC	3 cut(s)	769, 888, 900
RseI	CAYNNNNRTG	3 cut(s)	357, 683, 746
SapI	GCTCTTC	1 cut(s)	715
SatI	GCNGC	2 cut(s)	98, 762
Sau3AI	GATC	5 cut(s)	175, 272, 349, 532, 750
ScaI	AGTACT	1 cut(s)	889
SchI	GAGTC	1 cut(s)	326
SfaNI	GCATC	2 cut(s)	220, 640
SfoI	GGCGCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	3 cut(s)	357, 683, 746
Sse9I	AATT	7 cut(s)	7, 13, 40, 181, 204, 311, 794
SsiI	CCGC	3 cut(s)	291, 695, 840
SspDI	GGCGCC	1 cut(s)	601
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	216, 876
TaiI	ACGT	4 cut(s)	96, 195, 555, 740
TaqI	TCGA	3 cut(s)	116, 269, 472
TasI	AATT	7 cut(s)	7, 13, 40, 181, 204, 311, 794
TatI	WGTACW	2 cut(s)	768, 887
TfiI	GAWTC	2 cut(s)	362, 479
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	97, 761
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	33, 102, 581, 828
TspGWI	ACGGA	1 cut(s)	788
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.