Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

8681661 .. 8682513

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCAAGCATGTTTGGAAGGTTGAGAACTTTTCAAAGTTGAGTGCTGACTGCTGCGAATCAGAACCATTCACTGCCGGAGAACGAAAATGGAAGATACTGCTCTATCCCGAGGGAAATGGCAATGGAAAGGGTACTCATATTTCTCTATTCTTGGAATTGGATGATCCGGAAAAAGTTACTGATTCCAAAGTATTTGCAGAGTTTTCCCTGCGCATTGTAGATCAAATGCATGCCAAACATGAGTGGTTTATAGCTAACAACTGGTTCAGTAACTCAACTCGGGATTGGGGTTGGTCTACGTTCCTTAAACTGGAAACCTTCAATCAGGCACACAAGGGGTTTCTGTTGAACGATGCTTGCATAGTGGAGGCAGAGGTCACTATCCATGGAATTGCGGAAGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

5.46

Isoelectric Point (pI)

17.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	36, 325, 352
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	110, 282
Aor13HI	TCCGGA	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	216
AvaI	CYCGRG	2 cut(s)	110, 282
BbvI	GCAGC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	407
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	110, 282
BmsI	GCATC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	111, 388
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	269, 318
Bse3DI	GCAATG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	111, 388
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	269, 318
BseXI	GCAGC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	110, 282
BsiSI	CCGG	2 cut(s)	78, 170
BslI	CCNNNNNNNGG	1 cut(s)	313
BsoBI	CYCGRG	2 cut(s)	110, 282
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	166, 223
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	169
BspPI	GGATC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	269, 318
BssECI	CCNNGG	2 cut(s)	111, 388
BssMI	GATC	2 cut(s)	166, 223
BssT1I	CCWWGG	1 cut(s)	388
BstC8I	GCNNGC	3 cut(s)	8, 234, 361
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	169, 226
BstMBI	GATC	2 cut(s)	166, 223
BstNSI	RCATGY	2 cut(s)	14, 236
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	8, 234, 361
CfoI	GCGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	4 cut(s)	11, 233, 242, 389
CviJI	RGCY	1 cut(s)	257
CviKI_1	RGCY	1 cut(s)	257
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	2 cut(s)	168, 225
DpnII	GATC	2 cut(s)	166, 223
Eco130I	CCWWGG	1 cut(s)	388
Eco88I	CYCGRG	2 cut(s)	110, 282
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	14, 236, 245, 392
FaiI	YATR	8 cut(s)	12, 141, 234, 243, 254, 365, 390, 409
FatI	CATG	4 cut(s)	10, 232, 241, 388
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	55
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	55
HapII	CCGG	2 cut(s)	78, 170
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	14, 236, 245, 392
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	59, 185
HpaII	CCGG	2 cut(s)	78, 170
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	110, 170, 284
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	3 cut(s)	13, 331, 395
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	6, 200, 232, 363
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	14, 236, 245, 392
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	166, 223
LpnPI	CCDG	6 cut(s)	91, 183, 224, 250, 299, 314
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	178, 272, 379
MalI	GATC	2 cut(s)	168, 225
MboI	GATC	2 cut(s)	166, 223
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	2 cut(s)	158, 393
MnlI	CCTC	3 cut(s)	106, 364, 370
Mph1103I	ATGCAT	1 cut(s)	234
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	78, 170
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	166, 223
NlaIII	CATG	4 cut(s)	14, 236, 245, 392
NmuCI	GTSAC	1 cut(s)	379
NsbI	TGCGCA	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	2 cut(s)	14, 236
PaeI	GCATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	59, 185
PkrI	GCNGC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	166, 223
SetI	ASST	5 cut(s)	24, 259, 305, 323, 381
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	158, 393
SsiI	CCGC	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	388
TaiI	ACGT	1 cut(s)	305
TasI	AATT	2 cut(s)	158, 393
TfiI	GAWTC	2 cut(s)	59, 185
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	379
TspRI	CASTG	1 cut(s)	79
XceI	RCATGY	2 cut(s)	14, 236
XmiI	GTMKAC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.