Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

52206815 .. 52207834

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTGAGATTTTTTTTTGTTCCCCTTTGATCTTGTGCTGTCTTGATTCACTTGCAGGCCCGCTAGTTTCACGCTCATCTTCGGCTAATCCTCCAAAACACTTCAGTATGAAAGTAGAGTCGTTTTCGTTACTACAGAAAACAATGGATAGATATGAATCAAAGGAGTTTGAGGCTGGAGGATACAAGTGGAAACTAGTGCTCTTCCCAAATGGAAACAGGGCGAGAAATGGGAAAGACCACATTTCTCTCTACCTTGAAATGGCTGGATTAGAGGCAATTAAGGCCACACTGCATGTATTGGTTGATTTCAAGTTCTTTTTGCTTAATCAGTATAAGAAGAACTACTTGGTTCTTGAAGGAGAAAAAAAGGAGAGGTACTGTTTCTATCGGACGATTGTTGGTGGTATGGCCGGTTTTGATCAACTTATCTCTTTGAAAGATTTTACAAATGGTTATCTCTATGATGACACATGTGAGTTTGGAGTGGAGGTATTTGTTTCTGAAGAAAAAAGAAGAGATAGATTAGGGCTTGTATCCATGTTCGATAATGGTGTTATGTACAAGCATATTTGGAAAATTCCTAACTTTTCCAAATTAGATGGTCCATGTCATTCTTCAGAACCGTTCCCTGCTGGAGATCAGAAATATTGCGCGTGGTCCTATACTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

225

Amino Acids

25.82

Weight (kDa)

7.56

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	34 - 165	5.6e-27	MATH domain
MATH	PF00917	40 - 166	2e-10	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	656
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	88, 525, 603
AfaI	GTAC	2 cut(s)	380, 563
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	260, 313, 359, 439
AhlI	ACTAGT	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
Alw21I	GWGCWC	1 cut(s)	204
AoxI	GGCC	3 cut(s)	58, 285, 411
ApoI	RAATTY	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	3 cut(s)	59, 605, 660
AvaII	GGWCC	2 cut(s)	605, 660
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	1 cut(s)	596
BciVI	GTATCC	2 cut(s)	176, 547
BclI	TGATCA	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	2 cut(s)	65, 197
BfmI	CTRYAG	1 cut(s)	134
BfuI	GTATCC	2 cut(s)	176, 547
Bme18I	GGWCC	2 cut(s)	605, 660
BmgT120I	GGNCC	3 cut(s)	59, 605, 660
BpmI	CTGGAG	2 cut(s)	198, 657
BsaBI	GATNNNNATC	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	60, 287, 413
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	3 cut(s)	60, 287, 413
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	30, 421, 640
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	3 cut(s)	60, 287, 413
BspFNI	CGCG	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	413
BssMI	GATC	3 cut(s)	30, 421, 640
Bst4CI	ACNGT	2 cut(s)	383, 627
Bst6I	CTCTTC	2 cut(s)	209, 511
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	58, 62
BstDEI	CTNAG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	3 cut(s)	33, 424, 643
BstMBI	GATC	3 cut(s)	30, 421, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	299, 477
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	656
BsuI	GTATCC	2 cut(s)	176, 547
BsuRI	GGCC	3 cut(s)	60, 287, 413
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	58, 62
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	59, 605, 660
Csp6I	GTAC	2 cut(s)	379, 562
CviAII	CATG	4 cut(s)	296, 474, 541, 609
CviJI	RGCY	7 cut(s)	60, 86, 176, 266, 287, 413, 532
CviKI_1	RGCY	7 cut(s)	60, 86, 176, 266, 287, 413, 532
CviQI	GTAC	2 cut(s)	379, 562
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	32, 423, 642
DpnII	GATC	3 cut(s)	30, 421, 640
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	209, 511
EarI	CTCTTC	2 cut(s)	209, 511
Eco47I	GGWCC	2 cut(s)	605, 660
Eco57I	CTGAAG	3 cut(s)	88, 525, 603
FaeI	CATG	4 cut(s)	299, 477, 544, 612
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	4 cut(s)	295, 473, 540, 608
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	421
FspBI	CTAG	2 cut(s)	65, 197
GlaI	GCGC	1 cut(s)	655
GsuI	CTGGAG	2 cut(s)	198, 657
HaeIII	GGCC	3 cut(s)	60, 287, 413
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	4 cut(s)	299, 477, 544, 612
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HinfI	GANTC	3 cut(s)	47, 119, 158
HpaII	CCGG	1 cut(s)	414
Hpy188I	TCNGA	5 cut(s)	7, 393, 505, 622, 645
Hpy188III	TCNNGA	2 cut(s)	44, 356
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	383, 627
HpyCH4V	TGCA	2 cut(s)	56, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	299, 477, 544, 612
HspAI	GCGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	30, 421, 640
LguI	GCTCTTC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	42, 162, 205, 252, 427, 621, 645
MaeI	CTAG	2 cut(s)	65, 197
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	3 cut(s)	32, 423, 642
MboI	GATC	3 cut(s)	30, 421, 640
MboII	GAAGA	6 cut(s)	72, 196, 352, 518, 528, 609
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	279, 579, 596
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	102, 166, 173, 268, 369, 484
MseI	TTAA	3 cut(s)	282, 327, 676
MspI	CCGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	30, 421, 640
NlaIII	CATG	4 cut(s)	299, 477, 544, 612
NspI	RCATGY	2 cut(s)	299, 477
PciI	ACATGT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	47, 158
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PscI	ACATGT	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	59, 605, 660
RsaI	GTAC	2 cut(s)	380, 563
RsaNI	GTAC	2 cut(s)	379, 562
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	282, 327, 676
Sau3AI	GATC	3 cut(s)	30, 421, 640
Sau96I	GGNCC	3 cut(s)	59, 605, 660
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	3 cut(s)	258, 380, 495
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	605, 660
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	3 cut(s)	279, 579, 596
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	2 cut(s)	65, 197
TaaI	ACNGT	2 cut(s)	383, 627
TaqI	TCGA	1 cut(s)	546
TasI	AATT	3 cut(s)	279, 579, 596
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	47, 158
Tru1I	TTAA	3 cut(s)	282, 327, 676
Tru9I	TTAA	3 cut(s)	282, 327, 676
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	125, 171
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	605, 660
XapI	RAATTY	1 cut(s)	579
XceI	RCATGY	2 cut(s)	299, 477
XspI	CTAG	2 cut(s)	65, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.