Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

28848727 .. 28856760

Gene Structure 8034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAACAGTTGTTAATGCTGCCAACAAGGAGGCTAATCGAAGCTTAGCCGATCTGAATCCTACTGTTGTTTTCGTCTTGGGTGGCCCAGGCAGTGGAAAGGGTACCCAATGCGCAAACATTGTTCAGCACTTTGGGTTTACACATCTGAGTGCTGGTGATCTACTACGAGCAGAAATCAAGTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATAAAAGAAGGAAAAATTGTTCCTTCGGAAGTAACAATTAAGCTTCTCCAGAAAGCAATGTTGGAGAGTGGTAATGACAAATTTCTTATCGATGGGTTTCCTCGTAATGAAGAAAACCGTTCTGCATTTGAGGCTGTGACTAAAGTCGAGCCTTCATTTGTCCTGTTTTTTGATTGTTCTGAAGAAGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGAAGAGAAGATGATAACATAGAAACAATAAGGAAGCGGTTTAAGGTTTTTCTAGAGTCTAGTCTCCCAGTGATAGAATACTATAACTCCAAGGGGAAAGTTCGGAAGATTGATGCTGGAAGGCCTGTTGAAGAGGTTTATGAGTCAGTAAAAGCCATTTTTGCCCCGAAAGATGAGAAGATTGATGCTGGAAGACCTGTTGAAGAGGTTTTTGAGTCAGTAAAAGCCAATTTTGCCCTGGAAAATGAGAAGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

232

Amino Acids

25.75

Weight (kDa)

5.27

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	23 - 158	4e-06	AAA domain
AAA_18	PF13238	24 - 150	1.2e-08	AAA domain
ADK	PF00406	26 - 178	2.7e-48	Adenylate kinase
AAA_17	PF13207	27 - 157	2.6e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	104, 417
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	569, 641
AjnI	CCWGG	3 cut(s)	88, 435, 675
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	45, 262
AluI	AGCT	2 cut(s)	45, 262
Alw26I	GTCTC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	85, 560
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	116, 420
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	104, 417
BbsI	GAAGAC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	305, 403
BciT130I	CCWGG	3 cut(s)	90, 437, 677
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	2 cut(s)	491, 498
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	3 cut(s)	90, 437, 677
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	106, 202, 419, 434
BmrFI	CCNGG	3 cut(s)	90, 437, 677
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	541, 613
BmuI	ACTGGG	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	251
Bpu1102I	GCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	88, 436, 528, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	506
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	90, 437, 677
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	88, 436, 528, 675
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	87, 562
BshNI	GGYRCC	2 cut(s)	104, 417
BshVI	ATCGAT	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	87, 562
Bsp119I	TTCGAA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	52, 160
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	2 cut(s)	87, 562
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	4 cut(s)	106, 202, 419, 434
BspT104I	TTCGAA	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	104, 417
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	88, 436, 528, 675
BssMI	GATC	2 cut(s)	52, 160
BssNI	GRCGYC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	90, 437, 677
Bst4CI	ACNGT	3 cut(s)	10, 67, 338
Bst6I	CTCTTC	4 cut(s)	399, 436, 564, 636
BstACI	GRCGYC	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	46, 149
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	116, 420
BstKTI	GATC	2 cut(s)	55, 163
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
BstNI	CCWGG	3 cut(s)	90, 437, 677
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	88, 435, 675
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	87, 562
BsuTUI	ATCGAT	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 513
CfoI	GCGC	2 cut(s)	116, 420
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	2 cut(s)	205, 217
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	46, 149
DinI	GGCGCC	1 cut(s)	419
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
Eam1104I	CTCTTC	4 cut(s)	399, 436, 564, 636
EarI	CTCTTC	4 cut(s)	399, 436, 564, 636
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	3 cut(s)	88, 435, 675
EcoT14I	CCWWGG	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	419
EheI	GGCGCC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	2 cut(s)	208, 220
FaiI	YATR	5 cut(s)	206, 218, 458, 522, 579
FatI	CATG	2 cut(s)	204, 216
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	491, 498
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 419
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	87, 562
HhaI	GCGC	2 cut(s)	116, 420
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	208, 220
Hin6I	GCGC	2 cut(s)	114, 418
HinP1I	GCGC	2 cut(s)	114, 418
HindIII	AAGCTT	2 cut(s)	43, 260
HinfI	GANTC	4 cut(s)	58, 494, 581, 653
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	6 cut(s)	57, 150, 193, 247, 400, 543
Hpy188III	TCNNGA	2 cut(s)	268, 491
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	5 cut(s)	221, 252, 381, 552, 682
HpyCH4III	ACNGT	3 cut(s)	10, 67, 338
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
HpyF3I	CTNAG	2 cut(s)	46, 149
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	208, 220
HspAI	GCGC	2 cut(s)	114, 418
KasI	GGCGCC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	52, 160
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	541, 613
MaeI	CTAG	2 cut(s)	491, 498
MaeIII	GTNAC	2 cut(s)	250, 355
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MluCI	AATT	4 cut(s)	234, 255, 299, 667
Mly113I	GGCGCC	1 cut(s)	418
MlyI	GAGTC	3 cut(s)	503, 590, 662
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	25, 330, 343, 408, 565, 637
MseI	TTAA	4 cut(s)	15, 258, 480, 697
MslI	CAYNNNNRTG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	90, 437, 677
MvaI	CCWGG	3 cut(s)	90, 437, 677
MwoI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
NarI	GGCGCC	1 cut(s)	418
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	2 cut(s)	208, 220
NlaIV	GGNNCC	4 cut(s)	106, 202, 419, 434
NmuCI	GTSAC	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	3 cut(s)	502, 589, 661
PluTI	GGCGCC	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	502, 589, 661
PshAI	GACNNNNGTC	1 cut(s)	362
Psp6I	CCWGG	3 cut(s)	88, 435, 675
PspGI	CCWGG	3 cut(s)	88, 435, 675
PspN4I	GGNNCC	4 cut(s)	106, 202, 419, 434
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	15, 258, 480, 697
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	52, 160
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	3 cut(s)	503, 590, 662
ScrFI	CCNGG	3 cut(s)	90, 437, 677
SetI	ASST	6 cut(s)	47, 264, 486, 576, 637, 648
SfaNI	GCATC	2 cut(s)	541, 613
SfoI	GGCGCC	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	234, 255, 299, 667
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	1 cut(s)	475
SspDI	GGCGCC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	491, 498
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	88, 435, 675
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	10, 67, 338
TaqI	TCGA	4 cut(s)	40, 212, 309, 366
TasI	AATT	4 cut(s)	234, 255, 299, 667
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	15, 258, 480, 697
Tru9I	TTAA	4 cut(s)	15, 258, 480, 697
TscAI	CASTG	2 cut(s)	100, 513
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	342, 363
TspRI	CASTG	2 cut(s)	100, 513
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XspI	CTAG	2 cut(s)	491, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.