Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

45042130 .. 45043896

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTACCAGTAGAACTGAGCAGCATAAGATCAATGATGCCATTACAAAGTTCTGCGGCTCTGGCACGATGGATAAGTTTTTGCAGTGACAGCAGGGAATTAGTTCCTCAAGGCCCGCTAGTTTCACGCTCATCTTCGGCTAACCCTCCAAAACACTTCAGTATGAAAGTAGAGTCGTTTTCGTTACTACAGAAAACAATGGATAGATATGAATCAAAGGAGTTTGAGGCTGGAGGATACAAGTGGAAACTAGTGCTCTTCCCAAATGGAAACAGGGTGAGAAATGGGAAAGACCACATTTCTCTCTACCTTGAAATGGCTGGATTAGAGGCAATTAAGGCCACACTGCATGTATTGGTTGATTTCAAGTTCTTTTTGCTTAATCAGTATAAGAAGAACTACTTGGTTCTTGAAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCAGCAAACATCATTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTCGAGTTGGTCTTGGGGATGGGATCAGTTCCTTACACAGAGGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCACTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

210

Amino Acids

24.02

Weight (kDa)

9.08

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	52 - 134	2.1e-18	MATH domain
MATH_2	PF22486	143 - 203	2.7e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 116
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	462, 621
AcuI	CTGAAG	2 cut(s)	142, 456
AfiI	CCNNNNNNNGG	2 cut(s)	316, 528
AgsI	TTSAA	4 cut(s)	314, 367, 413, 577
AhlI	ACTAGT	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	3 cut(s)	112, 339, 564
ApeKI	GCWGC	2 cut(s)	21, 480
ApoI	RAATTY	2 cut(s)	462, 621
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	113, 564
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	33, 492
BccI	CCATC	2 cut(s)	63, 534
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	230
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	4 cut(s)	119, 251, 467, 627
BfmI	CTRYAG	2 cut(s)	188, 478
BfuI	GTATCC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	3 cut(s)	22, 57, 481
BlsI	GCNGC	3 cut(s)	23, 58, 482
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	113, 564
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 528
Bse1I	ACTGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	545
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	316, 528
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	33, 492
BshFI	GGCC	3 cut(s)	114, 341, 566
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	316, 528
BsnI	GGCC	3 cut(s)	114, 341, 566
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	29, 469, 544, 583
BspACI	CCGC	2 cut(s)	56, 116
BspANI	GGCC	3 cut(s)	114, 341, 566
BspCNI	CTCAG	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	1 cut(s)	552
BspQI	GCTCTTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	8
BssMI	GATC	4 cut(s)	29, 469, 544, 583
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	545
BstKTI	GATC	4 cut(s)	32, 472, 547, 586
BstMBI	GATC	4 cut(s)	29, 469, 544, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 90, 338
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	188, 478
BstV1I	GCAGC	2 cut(s)	33, 492
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	114, 341, 566
BtsCI	GGATG	1 cut(s)	545
BtsI	GCAGTG	2 cut(s)	91, 344
BtsIMutI	CAGTG	4 cut(s)	91, 344, 515, 523
Cac8I	GCNNGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	113, 564
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	59, 114, 140, 230, 320, 341, 416, 432, 566
CviKI_1	RGCY	9 cut(s)	59, 114, 140, 230, 320, 341, 416, 432, 566
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	4 cut(s)	31, 471, 546, 585
DpnII	GATC	4 cut(s)	29, 469, 544, 583
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	142, 456
Eco88I	CYCGRG	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	593
FaeI	CATG	1 cut(s)	353
FaiI	YATR	5 cut(s)	26, 164, 210, 351, 390
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 405, 437
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	22, 57, 481
FokI	GGATG	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	22, 57, 481
FspBI	CTAG	4 cut(s)	119, 251, 467, 627
GluI	GCNGC	3 cut(s)	22, 57, 481
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	114, 341, 566
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	2 cut(s)	173, 212
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	453, 506
Hpy188I	TCNGA	2 cut(s)	436, 474
Hpy188III	TCNNGA	3 cut(s)	410, 467, 577
Hpy8I	GTNNAC	2 cut(s)	453, 506
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	5 cut(s)	84, 349, 446, 480, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 90, 338
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	29, 469, 544, 583
LguI	GCTCTTC	1 cut(s)	263
LpnPI	CCDG	8 cut(s)	21, 47, 79, 216, 259, 306, 414, 441
Lsp1109I	GCAGC	2 cut(s)	33, 492
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	4 cut(s)	119, 251, 467, 627
MaeIII	GTNAC	3 cut(s)	3, 86, 183
MalI	GATC	4 cut(s)	31, 471, 546, 585
MboI	GATC	4 cut(s)	29, 469, 544, 583
MboII	GAAGA	3 cut(s)	126, 250, 406
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	98, 333, 462, 621
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	9 cut(s)	117, 156, 220, 227, 322, 435, 532, 555, 592
Mph1103I	ATGCAT	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	5 cut(s)	336, 381, 498, 615, 631
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	62, 90, 338
NdeII	GATC	4 cut(s)	29, 469, 544, 583
NlaIII	CATG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	23, 58, 482
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	113, 564
PspXI	VCTCGAGB	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	336, 381, 498, 615, 631
SatI	GCNGC	3 cut(s)	22, 57, 481
Sau3AI	GATC	4 cut(s)	29, 469, 544, 583
Sau96I	GGNCC	2 cut(s)	113, 564
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	2 cut(s)	312, 418
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	2 cut(s)	188, 478
Sfr274I	CTCGAG	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	108, 523
SmoI	CTYRAG	2 cut(s)	108, 523
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	4 cut(s)	98, 333, 462, 621
SsiI	CCGC	2 cut(s)	56, 116
SspMI	CTAG	4 cut(s)	119, 251, 467, 627
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	524
TasI	AATT	4 cut(s)	98, 333, 462, 621
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	5 cut(s)	336, 381, 498, 615, 631
Tru9I	TTAA	5 cut(s)	336, 381, 498, 615, 631
TscAI	CASTG	4 cut(s)	91, 351, 515, 523
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	21, 480
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	179, 225
TspRI	CASTG	4 cut(s)	91, 351, 515, 523
XapI	RAATTY	2 cut(s)	462, 621
XbaI	TCTAGA	1 cut(s)	466
XceI	RCATGY	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	4 cut(s)	119, 251, 467, 627
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.