Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

11459078 .. 11459699

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1146800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGAAGTGCCTTCATGGGGTGGCGCCCGATGTGGGTTTTGATAAACTTCTCTCCATTGAAGAACTTGCTGATGCCTCCAATGGATATGTCATTAACGACACCTGTGTGTTTGGAGTGGAGGTCTTTGTTTGTCAAGAAAGAAGAGCAGGCTACGGGAGGTCCATATCAATGACCAATAATGCTGCGAAGTACACGCATGTTTGGAAGATTGAGAAATTTTCAATGTTAAAAGATGGATATTATTGCTCCAAACCATTCACCGCAGCGAACCAGAGATGGGAGATACATATATATCCCAAGGGAGATGGTGCTTCAAAGGGTACTCATCTTGCACTTTACTTAACATTGGCTGAAGCAGAAAAGCTACAACCTCAGTGGCGGAGCCAGGATTTCGGGTTAGGAGGGGCCTCTCACAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

7.68

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	66 - 128	1.5e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	2 cut(s)	264, 382
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	194, 325
AfiI	CCNNNNNNNGG	3 cut(s)	19, 35, 280
AgsI	TTSAA	3 cut(s)	62, 225, 318
AjnI	CCWGG	1 cut(s)	387
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	185, 266
ApoI	RAATTY	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	162, 408
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	172, 278
BccI	CCATC	3 cut(s)	230, 273, 302
BciT130I	CCWGG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	2 cut(s)	186, 267
BlsI	GCNGC	2 cut(s)	187, 268
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	162, 408
BmiI	GGNNCC	3 cut(s)	27, 386, 409
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 35, 280
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	19, 35, 280
BseMII	CTCAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	172, 278
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	19, 35, 280
BsnI	GGCC	1 cut(s)	410
BspACI	CCGC	2 cut(s)	264, 382
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	27, 386, 409
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	172, 278
BsuRI	GGCC	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	162, 408
Csp6I	GTAC	2 cut(s)	193, 324
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	2 cut(s)	17, 200
CviJI	RGCY	5 cut(s)	153, 353, 367, 387, 410
CviKI_1	RGCY	5 cut(s)	153, 353, 367, 387, 410
CviQI	GTAC	2 cut(s)	193, 324
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	20, 203
FaiI	YATR	7 cut(s)	18, 90, 167, 201, 291, 293, 295
FatI	CATG	2 cut(s)	16, 199
Fnu4HI	GCNGC	2 cut(s)	186, 267
Fsp4HI	GCNGC	2 cut(s)	186, 267
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	186, 267
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	20, 203
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	4, 335
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	20, 203
HspAI	GCGC	1 cut(s)	26
KasI	GGCGCC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	254, 384
LpnPI	CCDG	5 cut(s)	118, 135, 287, 374, 401
Lsp1109I	GCAGC	2 cut(s)	172, 278
LweI	GCATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	74, 156, 220
MluCI	AATT	1 cut(s)	218
Mly113I	GGCGCC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	88, 115, 153, 384, 398, 421
MseI	TTAA	4 cut(s)	96, 230, 344, 424
MslI	CAYNNNNRTG	2 cut(s)	107, 170
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
NarI	GGCGCC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	20, 203
NlaIV	GGNNCC	3 cut(s)	27, 386, 409
NspI	RCATGY	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	187, 268
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	27, 386, 409
PspPI	GGNCC	2 cut(s)	162, 408
RsaI	GTAC	2 cut(s)	194, 325
RsaNI	GTAC	2 cut(s)	193, 324
RseI	CAYNNNNRTG	2 cut(s)	107, 170
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	4 cut(s)	96, 230, 344, 424
SatI	GCNGC	2 cut(s)	186, 267
Sau96I	GGNCC	2 cut(s)	162, 408
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	5 cut(s)	107, 126, 164, 369, 376
SfaNI	GCATC	1 cut(s)	64
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	107, 170
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	264, 382
SspDI	GGCGCC	1 cut(s)	25
SspI	AATATT	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	300
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	4 cut(s)	96, 230, 344, 424
Tru9I	TTAA	4 cut(s)	96, 230, 344, 424
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	2 cut(s)	185, 266
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.