Rroxscaffold_5G00368810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008885
Physical Location & Seq
Forward (+)
50531783 .. 50532207
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368810.1

Sequence Viewer

Length: 333 bp
ATGGCGTCCTCGAAGGTTGTTTCTAGGTTATCGTCCCGATCATCACAAAGCCTCGGGCACAATCTCATCAAGACATGGACGGACTCCTCCATATTCTCTTCACTCAAATCGAGCTTTCACTCGGAGGCATGCACTACGGTTCGACTGTTGCTCCCACCTCAAGGTTATCGATCTCCTTCTCTTTCACATGAATTCTCATCTTTTGTTACCAATAGAACCGAGCAGCATAAGATCAATGATTCCATTACAAAGTTCGCGGCTCCGGCACGATGGATAAGTTTTTGCGGTGACAGCGGGGAATTAGTTCCTCAAGGTGATCTTGTGTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.07

Weight (kDa)

9.18

Isoelectric Point (pI)

76.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 257, 285, 294
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 161
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 299, 326
AvaI CYCGRG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 264
BfaI CTAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 224, 258
BlsI GCNGC 2 cut(s) 225, 259
BmeT110I CYCGRG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 144, 294
Bsa29I ATCGAT 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 4 cut(s) 38, 170, 231, 316
BspACI CCGC 3 cut(s) 257, 285, 294
BspDI ATCGAT 1 cut(s) 169
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 4 cut(s) 38, 170, 231, 316
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 139, 147
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 130
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 4 cut(s) 41, 173, 234, 319
BstMBI GATC 4 cut(s) 38, 170, 231, 316
BstMWI GCNNNNNNNGC 2 cut(s) 263, 291
BstNSI RCATGY 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 169
CviAII CATG 3 cut(s) 75, 129, 188
CviJI RGCY 3 cut(s) 51, 114, 260
CviKI_1 RGCY 3 cut(s) 51, 114, 260
DpnI GATC 4 cut(s) 40, 172, 233, 318
DpnII GATC 4 cut(s) 38, 170, 231, 316
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 191
FaeI CATG 3 cut(s) 78, 132, 191
FaiI YATR 5 cut(s) 76, 92, 130, 189, 228
FalI AAGNNNNNCTT 1 cut(s) 303
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 74, 128, 187
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 224, 258
Fsp4HI GCNGC 2 cut(s) 224, 258
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 224, 258
HapII CCGG 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 78, 132, 191
HinfI GANTC 2 cut(s) 83, 239
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 299, 326
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 36, 70
HpyAV CCTTC 2 cut(s) 7, 186
HpyCH4III ACNGT 2 cut(s) 139, 147
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 291
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 78, 132, 191
Kzo9I GATC 4 cut(s) 38, 170, 231, 316
LmnI GCTCC 2 cut(s) 156, 265
LpnPI CCDG 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 205, 287
MalI GATC 4 cut(s) 40, 172, 233, 318
MboI GATC 4 cut(s) 38, 170, 231, 316
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 191, 299
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 6 cut(s) 19, 62, 97, 118, 168, 318
MroXI GAANNNNTTC 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 263, 291
NdeII GATC 4 cut(s) 38, 170, 231, 316
NlaIII CATG 3 cut(s) 78, 132, 191
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 225, 259
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 261
SatI GCNGC 2 cut(s) 224, 258
Sau3AI GATC 4 cut(s) 38, 170, 231, 316
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 18, 29, 116, 160, 166, 316
SmlI CTYRAG 2 cut(s) 159, 309
SmoI CTYRAG 2 cut(s) 159, 309
SphI GCATGC 1 cut(s) 132
Sse9I AATT 2 cut(s) 191, 299
SsiI CCGC 3 cut(s) 257, 285, 294
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 139, 147
TaqI TCGA 4 cut(s) 11, 110, 142, 169
TasI AATT 2 cut(s) 191, 299
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 239
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 95
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.