Rw4G023460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008885
Physical Location & Seq
Forward (+)
49066220 .. 49067724
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023460.1

Sequence Viewer

Length: 318 bp
ATGGCTTCCTCGAAGGTTGTTTCTAGGTTATCGTCCCGATCATCACAAAGCCTCGGGCACAATCTCATCAAGACATGGACGGACTCCTCCAAATTCTCTTCACTCAAATCGAGCTTTCACTCGGAGGCATGCACTACAGTTCGACCTGTTGCTCCCACCTCAAGGTTACCAGTAGAACTGAGCAGCATAAGATCAATGATGCCAGTACAAAGTTCTGCGGCTCTGGCACGATGGATAAGTTTTTGCAGTGACAGCAGGGAATTAGTTCCTCAAGATAAACCCATCAAAGTACCTTTATCAAGCTATATAAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.59

Weight (kDa)

10.63

Isoelectric Point (pI)

93.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 2 cut(s) 207, 291
AfiI CCNNNNNNNGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 114, 303
AluI AGCT 2 cut(s) 114, 303
Ama87I CYCGRG 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 225, 290
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 184, 219
BlsI GCNGC 2 cut(s) 185, 220
BmeT110I CYCGRG 1 cut(s) 53
BmsI GCATC 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 145, 255
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 170, 203
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 170, 203
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 191
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 170, 203
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 38, 191
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 165
BstKTI GATC 2 cut(s) 41, 194
BstMBI GATC 2 cut(s) 38, 191
BstMWI GCNNNNNNNGC 2 cut(s) 224, 252
BstNSI RCATGY 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 206, 290
CviAII CATG 2 cut(s) 75, 129
CviJI RGCY 5 cut(s) 5, 51, 114, 221, 303
CviKI_1 RGCY 5 cut(s) 5, 51, 114, 221, 303
CviQI GTAC 2 cut(s) 206, 290
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 40, 193
DpnII GATC 2 cut(s) 38, 191
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 165
EcoO65I GGTNACC 1 cut(s) 165
FaeI CATG 2 cut(s) 78, 132
FaiI YATR 5 cut(s) 76, 130, 188, 306, 308
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 74, 128
Fnu4HI GCNGC 2 cut(s) 184, 219
Fsp4HI GCNGC 2 cut(s) 184, 219
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 184, 219
Hin1II CATG 2 cut(s) 78, 132
HinfI GANTC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 36, 70, 272
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 132, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 252
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 78, 132
Kzo9I GATC 2 cut(s) 38, 191
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 159, 183, 209, 216, 241
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 165, 248
MalI GATC 2 cut(s) 40, 193
MboI GATC 2 cut(s) 38, 191
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 92, 260
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 7 cut(s) 19, 62, 97, 118, 169, 279, 306
MroXI GAANNNNTTC 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 224, 252
NdeII GATC 2 cut(s) 38, 191
NlaIII CATG 2 cut(s) 78, 132
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 264
PkrI GCNGC 2 cut(s) 185, 220
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspEI GGTNACC 1 cut(s) 165
RsaI GTAC 2 cut(s) 207, 291
RsaNI GTAC 2 cut(s) 206, 290
SatI GCNGC 2 cut(s) 184, 219
Sau3AI GATC 2 cut(s) 38, 191
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 60
SetI ASST 9 cut(s) 18, 29, 116, 148, 161, 167, 295, 305, 317
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 160, 270
SmoI CTYRAG 2 cut(s) 160, 270
SphI GCATGC 1 cut(s) 132
Sse9I AATT 2 cut(s) 92, 260
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 3 cut(s) 11, 110, 142
TasI AATT 2 cut(s) 92, 260
TatI WGTACW 1 cut(s) 205
TauI GCSGC 1 cut(s) 221
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 253
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.