Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

12514156 .. 12516320

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1156800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTAGCCTTAACTTGGATCAAGGTGGGATTTCGAGATCATATTCAGTTTCACCCGCAACTCATTACACTTTAAAATTAGAGTCGTTTTCAATGCTAAAAGAACTTACAGGGGATCATAGATTTGAATCGGACGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTGATCTTCCCATATGGAAACAAGAAGAAAAATGTGGAAGGCCACATCTCTATCTACTTGCAAATGGCTCGAACAGATTCACTTCAGCCTGACTGGGAAGTATATGTTGACTTCAGAGTGTGTTTGCTTGATCAGGAAAAAGGAACCTACGTGGTTTTTCAAGACGATAAGATAATGCAGAAGTGCCTTCATGGGGCGGCGCCTGATGTAGGTTTTGATAAACTTATCTCCCTTAAGGAACTTGCTGATGCCTCCAATGGATATGTCATTAACGACACCTGTGTGTTTGGAGTGGAGGTTTTTGTTCGTAAAGAAAGAAGAGCAGGCAACGGAAGGTCCATATCAATGACCAAGAATGCTGCGATGTACACGCATGTTTGGAAGATTGAGAACTTTTCAAAGTTAAAAGATGAATATTATTGCTCCAAACCATTCACCGCAGAAAACCAGAGATGGAAGATAGATATATATCCCGAGGGAGATGGTGCTTCAAAGGGTACTCATCTTGCACTTAACTTAACATTGGCTGATGCAGAAAAGCTACATCCTCGCTCCCAAATCCTTACAAAGTTCACCTTTCGTATTGTAGATCAAATGCATCACATGCATCATTGTAGTTTTCCAGGTACTACTTGGTTCAGCGCTTCACAAAAGAGTTGGGGTTGGCCGTCATTCATCACACTGGCCACTTTGAATGAGGCAGACAAGGGATTTTTATTGAACAATACTTGCATAGTCGAGGCAGACATCATCGTCATTGCAATTGCTAAAGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

316

Amino Acids

35.72

Weight (kDa)

6.6

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 156	4.7e-33	MATH domain
MATH	PF00917	29 - 158	1.1e-11	MATH domain
MATH_2	PF22486	180 - 306	1e-33	MATH domain
MATH	PF00917	185 - 306	9.6e-14	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	3 cut(s)	57, 365, 606
AclWI	GGATC	2 cut(s)	27, 123
AcoI	YGGCCR	2 cut(s)	833, 852
AcuI	CTGAAG	2 cut(s)	236, 265
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	3 cut(s)	536, 667, 796
AfeI	AGCGCT	1 cut(s)	811
AfiI	CCNNNNNNNGG	3 cut(s)	16, 361, 377
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	8 cut(s)	93, 128, 143, 329, 567, 660, 862, 889
AjnI	CCWGG	1 cut(s)	790
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	2 cut(s)	146, 709
AluI	AGCT	2 cut(s)	146, 709
AlwI	GGATC	2 cut(s)	27, 123
Ama87I	CYCGRG	1 cut(s)	641
Aor51HI	AGCGCT	1 cut(s)	811
AoxI	GGCC	3 cut(s)	208, 833, 852
ApeKI	GCWGC	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	2 cut(s)	370, 812
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	4 cut(s)	45, 181, 595, 733
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	615, 644
BceAI	ACGGC	1 cut(s)	820
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	944
BfoI	RGCGCY	2 cut(s)	371, 813
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	366, 528
BlsI	GCNGC	2 cut(s)	367, 529
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	504
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	2 cut(s)	313, 369
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	4 cut(s)	406, 688, 775, 784
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	2 cut(s)	127, 636
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 361, 377
Bse1I	ACTGG	3 cut(s)	171, 266, 855
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	2 cut(s)	127, 636
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	2 cut(s)	127, 636
BseLI	CCNNNNNNNGG	3 cut(s)	16, 361, 377
BseMI	GCAATG	1 cut(s)	924
BseNI	ACTGG	3 cut(s)	171, 266, 855
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	3 cut(s)	210, 835, 854
BshNI	GGYRCC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	16, 361, 377
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	210, 835, 854
BsoBI	CYCGRG	1 cut(s)	641
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
BspACI	CCGC	3 cut(s)	57, 365, 606
BspANI	GGCC	3 cut(s)	210, 835, 854
BspLI	GGNNCC	2 cut(s)	313, 369
BspPI	GGATC	2 cut(s)	27, 123
BspQI	GCTCTTC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	171, 266, 855
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	792
Bst6I	CTCTTC	1 cut(s)	481
BstACI	GRCGYC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstAUI	TGTACA	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	712
BstH2I	RGCGCY	2 cut(s)	371, 813
BstHHI	GCGC	2 cut(s)	370, 812
BstKTI	GATC	6 cut(s)	22, 41, 118, 174, 301, 760
BstMBI	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	772
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	2 cut(s)	545, 775
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	210, 835, 854
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	848
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	2 cut(s)	370, 812
Cfr13I	GGNCC	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	535, 666, 795
CviAII	CATG	3 cut(s)	359, 542, 772
CviJI	RGCY	9 cut(s)	9, 146, 210, 236, 256, 695, 709, 835, 854
CviKI_1	RGCY	9 cut(s)	9, 146, 210, 236, 256, 695, 709, 835, 854
CviQI	GTAC	3 cut(s)	535, 666, 795
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	6 cut(s)	21, 40, 117, 173, 300, 759
DpnII	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
DraI	TTTAAA	1 cut(s)	75
DrdI	GACNNNNNNGTC	1 cut(s)	920
DseDI	GACNNNNNNGTC	1 cut(s)	920
EaeI	YGGCCR	2 cut(s)	833, 852
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	504
Eco47III	AGCGCT	1 cut(s)	811
Eco57I	CTGAAG	2 cut(s)	236, 265
Eco88I	CYCGRG	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	790
EcoT22I	ATGCAT	2 cut(s)	768, 777
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
FaeI	CATG	3 cut(s)	362, 545, 775
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FatI	CATG	3 cut(s)	358, 541, 771
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	366, 528
FokI	GGATG	1 cut(s)	699
Fsp4HI	GCNGC	2 cut(s)	366, 528
GlaI	GCGC	2 cut(s)	369, 811
GluI	GCNGC	2 cut(s)	366, 528
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	2 cut(s)	371, 813
HaeIII	GGCC	3 cut(s)	210, 835, 854
HhaI	GCGC	2 cut(s)	370, 812
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	362, 545, 775
Hin6I	GCGC	2 cut(s)	368, 810
HinP1I	GCGC	2 cut(s)	368, 810
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	83, 128, 245
HphI	GGTGA	4 cut(s)	45, 181, 595, 733
Hpy166II	GTNNAC	3 cut(s)	277, 537, 741
Hpy188I	TCNGA	2 cut(s)	133, 284
Hpy188III	TCNNGA	4 cut(s)	36, 302, 329, 641
Hpy8I	GTNNAC	3 cut(s)	277, 537, 741
HpyAV	CCTTC	3 cut(s)	200, 365, 495
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	8 cut(s)	229, 346, 677, 701, 766, 775, 900, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	772
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	362, 545, 775
HspAI	GCGC	2 cut(s)	368, 810
KasI	GGCGCC	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	596, 725
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	4 cut(s)	406, 688, 775, 784
MaeII	ACGT	1 cut(s)	318
MalI	GATC	6 cut(s)	21, 40, 117, 173, 300, 759
MboI	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
MboII	GAAGA	5 cut(s)	166, 205, 498, 562, 637
MfeI	CAATTG	1 cut(s)	930
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	2 cut(s)	77, 930
MluNI	TGGCCA	1 cut(s)	854
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	143, 430, 457, 637, 726, 859, 901
Mox20I	TGGCCA	1 cut(s)	854
Mph1103I	ATGCAT	2 cut(s)	768, 777
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	7 cut(s)	12, 74, 402, 438, 572, 681, 686
MslI	CAYNNNNRTG	2 cut(s)	449, 512
Msp20I	TGGCCA	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	1 cut(s)	772
NarI	GGCGCC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
NlaIII	CATG	3 cut(s)	362, 545, 775
NlaIV	GGNNCC	2 cut(s)	313, 369
NsiI	ATGCAT	2 cut(s)	768, 777
NspI	RCATGY	2 cut(s)	545, 775
OliI	CACNNNNGTG	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	128, 245
PkrI	GCNGC	2 cut(s)	367, 529
PleI	GAGTC	1 cut(s)	91
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	313, 369
PspPI	GGNCC	1 cut(s)	504
RsaI	GTAC	3 cut(s)	536, 667, 796
RsaNI	GTAC	3 cut(s)	535, 666, 795
RseI	CAYNNNNRTG	2 cut(s)	449, 512
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	7 cut(s)	12, 74, 402, 438, 572, 681, 686
SatI	GCNGC	2 cut(s)	366, 528
Sau3AI	GATC	6 cut(s)	19, 38, 115, 171, 298, 757
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	792
SfaNI	GCATC	4 cut(s)	406, 688, 775, 784
SfcI	CTRYAG	1 cut(s)	944
SfoI	GGCGCC	1 cut(s)	369
SinI	GGWCC	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	449, 512
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	77, 930
SsiI	CCGC	3 cut(s)	57, 365, 606
SspDI	GGCGCC	1 cut(s)	367
SspI	AATATT	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	790
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	35, 238, 906
TasI	AATT	2 cut(s)	77, 930
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	128, 245
Tru1I	TTAA	7 cut(s)	12, 74, 402, 438, 572, 681, 686
Tru9I	TTAA	7 cut(s)	12, 74, 402, 438, 572, 681, 686
TscAI	CASTG	1 cut(s)	855
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	347, 594, 832
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	855
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	375
XceI	RCATGY	2 cut(s)	545, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	244
Zsp2I	ATGCAT	2 cut(s)	768, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.