Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Forward (+)

50539553 .. 50540147

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTTATCTCTATATATGATGACACATGTGAGTTTGGAGTGGAGATCTTTGTTTCTGAAGAAAAAAGAAGAGATAGATTAGGGCTTGAAACTAATGCTGTATCCGGCCGGCCAAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTTTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCATTCTCTTAAAAGTAAAGTTGTCCTAGCTAGTTCTGAGATCATCTATGATACTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

4.87

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	38 - 85	1e-05	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	106, 110
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	89, 194
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	173, 275
AluI	AGCT	2 cut(s)	173, 275
AoxI	GGCC	2 cut(s)	106, 110
ApoI	RAATTY	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	112
BfaI	CTAG	4 cut(s)	123, 224, 272, 276
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	2 cut(s)	45, 226
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	108, 112
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	105, 109
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	108, 112
Bsp143I	GATC	3 cut(s)	45, 226, 285
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	108, 112
BspCNI	CTCAG	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	3 cut(s)	45, 226, 285
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	48, 229, 288
BstMBI	GATC	3 cut(s)	45, 226, 285
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	45, 226
BstYI	RGATCY	2 cut(s)	45, 226
BstZI	CGGCCG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	108, 112
Cac8I	GCNNGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	6 cut(s)	85, 108, 112, 173, 189, 275
CviKI_1	RGCY	6 cut(s)	85, 108, 112, 173, 189, 275
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	47, 228, 287
DpnII	GATC	3 cut(s)	45, 226, 285
EaeI	YGGCCR	2 cut(s)	106, 110
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	30
FaiI	YATR	5 cut(s)	14, 16, 18, 28, 294
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	238
FseI	GGCCGGCC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	4 cut(s)	123, 224, 272, 276
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	108, 112
HapII	CCGG	2 cut(s)	105, 109
Hin1II	CATG	1 cut(s)	30
HpaII	CCGG	2 cut(s)	105, 109
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	58, 231, 283
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	108
KroNI	GCCGGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	45, 226, 285
LpnPI	CCDG	6 cut(s)	118, 122, 142, 171, 183, 198
MaeI	CTAG	4 cut(s)	123, 224, 272, 276
MalI	GATC	3 cut(s)	47, 228, 287
MboI	GATC	3 cut(s)	45, 226, 285
MboII	GAAGA	2 cut(s)	71, 81
MflI	RGATCY	2 cut(s)	45, 226
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	1 cut(s)	192
MroNI	GCCGGC	1 cut(s)	108
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	105, 109
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
NaeI	GCCGGC	1 cut(s)	110
NdeII	GATC	3 cut(s)	45, 226, 285
NgoMIV	GCCGGC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	30
PciI	ACATGT	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	239
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	45, 226
PvuII	CAGCTG	1 cut(s)	173
RigI	GGCCGGCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	45, 226, 285
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	2 cut(s)	175, 277
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	4 cut(s)	123, 224, 272, 276
StyD4I	CCNGG	1 cut(s)	184
TasI	AATT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
XapI	RAATTY	1 cut(s)	219
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	4 cut(s)	123, 224, 272, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.