Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008885

Physical Location & Seq

Genomic Coordinates Reverse (-)

15234414 .. 15235841

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGATAGATATGAATCAAAGGAGTTTGAGGCTCGAGGATACAAGTGGAAACTAGTGCTCTTCCCAAATGGAAACAAGGCAATAAATGGGAAAGATCACATTTCTCTCTACCTTGAAATGGCTGGATTAGAGGCAATTAAGGCCACACTGCATGTATTGGTTGAGTTCAAGTTCTTTTTGCTTAATCAGTATAAGAAGAACTACTTGGTTCTTGAAGGAGAAAAAAAGGAGAGGTACTGTTTCTATCGGACGATTGTTGGTGGTATGGCCGGTTTTGATCAACTTATCTCTTTGAAAGATTTTACAAATGGTTACCTCTATGATGACACATGTGAGTTTGGAGTGGAGGTCTTTGTTTCTGAAGAAACAAGAAGAGATAGATTAGGGCTTGTATCCATGTTCGATAATGGCGTTATGTACAAGCATGTTTGGAAAATTCCTAACTTTTCCAAGTTAGATGGTCCATGTCATTCTTCAGAACCGTTCCCTGCTGGAGATCAGAAATATTGCGTGTGGAAACTAATGCTGTATCCCAAGGGTACTAGCACCAGTAGTGATTATCTTTCTCTGTTCTTGGTATTGGATAATCCAGCTGTCCTTCCTCCTGGCTCTGAAGTATTTGCAGAGTTTACATTGCGAATTCTAGATCTGAACTGCGGCAAACATCGTTCTCTTAAAAGTGAACAGTGGTTCAGTGCCTGGAGTTGGTCTTGGGGATGGGATGAGTTCCTTACACAGAAGGCCAAGTTTTTCAAGAAAGATCAATGCATTGTGGAGGCAGAAATCAGTATTAAAGGAATTTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

270

Amino Acids

31.15

Weight (kDa)

6.54

Isoelectric Point (pI)

22.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	2 - 117	2.2e-21	MATH domain
MATH	PF00917	3 - 118	4.2e-09	MATH domain
MATH_2	PF22486	141 - 262	1.8e-22	MATH domain
MATH	PF00917	147 - 264	1e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008885)

Species	Orthologous Gene IDs
malus_domestica	MD00G1221700.v1.1 MD16G1132800.v1.1 MD16G1133000.v1.1 MD16G1146800.v1.1 MD16G1156800.v1.1
pyrus_communis	pycom13g12360 pycom13g12430
rosa_chinensis	RchiOBHm_Chr4g0426841 RchiOBHm_Chr4g0426851
rosa_laevigata	RLG00000007273
rosa_multiflora	Rmu_sc0000953.1_g000014
rosa_roxburghii	Rroxscaffold_5G00368810 Rroxscaffold_5G00368830
rosa_rugosa	Rorug01G0205600 Rorug01G0205700 Rorug01G0205800 Rorug03G0234100
rosa_samantha	Rh4AG270300 Rh4BG276600 Rh4CG291400 Rh4DG273900 Rh5BG094000
rosa_wichuraiana	Rw4G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	657
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	3 cut(s)	435, 639, 798
AcuI	CTGAAG	3 cut(s)	381, 459, 633
AfaI	GTAC	3 cut(s)	236, 419, 541
AfiI	CCNNNNNNNGG	2 cut(s)	118, 705
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	116, 169, 215, 295, 754
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	604, 698
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	593
AluI	AGCT	1 cut(s)	593
Alw21I	GWGCWC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	699
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	141, 267, 741
ApoI	RAATTY	3 cut(s)	435, 639, 798
AspS9I	GGNCC	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	452, 711
BciT130I	CCWGG	2 cut(s)	606, 700
BciVI	GTATCC	3 cut(s)	32, 403, 540
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	4 cut(s)	53, 543, 644, 804
BfuI	GTATCC	3 cut(s)	32, 403, 540
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	606, 700
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	606, 700
BpmI	CTGGAG	2 cut(s)	513, 721
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 705
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	606, 700
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	722, 727
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	118, 705
BseMI	GCAATG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	143, 269, 743
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	118, 705
BsnI	GGCC	3 cut(s)	143, 269, 743
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	94, 277, 496, 646, 760
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	3 cut(s)	143, 269, 743
BspQI	GCTCTTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	94, 277, 496, 646, 760
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	606, 700
Bst4CI	ACNGT	3 cut(s)	239, 483, 687
Bst6I	CTCTTC	2 cut(s)	65, 367
BstAUI	TGTACA	1 cut(s)	417
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	722, 727
BstKTI	GATC	5 cut(s)	97, 280, 499, 649, 763
BstMBI	GATC	5 cut(s)	94, 277, 496, 646, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	606, 700
BstNSI	RCATGY	3 cut(s)	155, 333, 428
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	604, 698
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuI	GTATCC	3 cut(s)	32, 403, 540
BsuRI	GGCC	3 cut(s)	143, 269, 743
BtsCI	GGATG	2 cut(s)	722, 727
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	3 cut(s)	146, 692, 700
CaiI	CAGNNNCTG	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	235, 418, 540
CviAII	CATG	5 cut(s)	152, 330, 397, 425, 465
CviJI	RGCY	8 cut(s)	32, 122, 143, 269, 388, 593, 609, 743
CviKI_1	RGCY	8 cut(s)	32, 122, 143, 269, 388, 593, 609, 743
CviQI	GTAC	3 cut(s)	235, 418, 540
DpnI	GATC	5 cut(s)	96, 279, 498, 648, 762
DpnII	GATC	5 cut(s)	94, 277, 496, 646, 760
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	65, 367
EarI	CTCTTC	2 cut(s)	65, 367
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	3 cut(s)	381, 459, 633
Eco88I	CYCGRG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	604, 698
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	5 cut(s)	155, 333, 400, 428, 468
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	5 cut(s)	151, 329, 396, 424, 464
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	2 cut(s)	729, 734
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	4 cut(s)	53, 543, 644, 804
GluI	GCNGC	1 cut(s)	658
GsuI	CTGGAG	2 cut(s)	513, 721
HaeIII	GGCC	3 cut(s)	143, 269, 743
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	5 cut(s)	155, 333, 400, 428, 468
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	630, 683
Hpy188I	TCNGA	6 cut(s)	249, 361, 478, 501, 613, 651
Hpy188III	TCNNGA	3 cut(s)	212, 644, 754
Hpy8I	GTNNAC	2 cut(s)	630, 683
HpyAV	CCTTC	3 cut(s)	209, 608, 733
HpyCH4III	ACNGT	3 cut(s)	239, 483, 687
HpyCH4V	TGCA	3 cut(s)	151, 623, 768
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	155, 333, 400, 428, 468
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	94, 277, 496, 646, 760
LguI	GCTCTTC	1 cut(s)	65
MaeI	CTAG	4 cut(s)	53, 543, 644, 804
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	5 cut(s)	96, 279, 498, 648, 762
MboI	GATC	5 cut(s)	94, 277, 496, 646, 760
MboII	GAAGA	5 cut(s)	52, 208, 374, 384, 465
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	135, 435, 639, 798
MnlI	CCTC	8 cut(s)	22, 29, 124, 225, 326, 340, 612, 769
Mph1103I	ATGCAT	1 cut(s)	770
MseI	TTAA	5 cut(s)	138, 183, 675, 792, 808
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	606, 700
MvaI	CCWGG	2 cut(s)	606, 700
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	5 cut(s)	94, 277, 496, 646, 760
NlaIII	CATG	5 cut(s)	155, 333, 400, 428, 468
NsiI	ATGCAT	1 cut(s)	770
NspI	RCATGY	3 cut(s)	155, 333, 428
PaeR7I	CTCGAG	1 cut(s)	33
PciI	ACATGT	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	659
PscI	ACATGT	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	604, 698
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	604, 698
PspPI	GGNCC	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	3 cut(s)	236, 419, 541
RsaNI	GTAC	3 cut(s)	235, 418, 540
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	5 cut(s)	138, 183, 675, 792, 808
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	5 cut(s)	94, 277, 496, 646, 760
Sau96I	GGNCC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	606, 700
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	5 cut(s)	114, 236, 318, 351, 595
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	4 cut(s)	135, 435, 639, 798
SsiI	CCGC	1 cut(s)	657
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	4 cut(s)	53, 543, 644, 804
StyD4I	CCNGG	2 cut(s)	604, 698
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	239, 483, 687
TaqI	TCGA	2 cut(s)	34, 402
TasI	AATT	4 cut(s)	135, 435, 639, 798
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	5 cut(s)	138, 183, 675, 792, 808
Tru9I	TTAA	5 cut(s)	138, 183, 675, 792, 808
TscAI	CASTG	3 cut(s)	153, 692, 700
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	153, 692, 700
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	435, 639, 798
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	3 cut(s)	155, 333, 428
XhoI	CTCGAG	1 cut(s)	33
XspI	CTAG	4 cut(s)	53, 543, 644, 804
Zsp2I	ATGCAT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.