Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

16964920 .. 16976537

Gene Structure 11618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1065800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6777 bp

ATGCAATCTGGTGGTGGAGGAGGAGGCGGGCCCGGCAGGGGAGTGGGCCCGGCTGGCCGTGCCGGGTCGACGTCGTCGGCTGCTTCGCCGTCTTCATCGTCCTCGGCCGTGTCAACGCCACGTCTGGGTTTTGATTCGGTGCAGCATCAACAACATCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAATTGGGGTCTAGACAGCCATTACACCAACAACAATTTTTAAGAAAACCTGAAGGGAATGAAGCACTTCGAGCATATCAAGTTGCTGGTATGCAAGGAGTTTTGGGTGGGGGCAATTTTGTTTCATCTTCCGGCTCCAGTCAAATGCCTCAACAATCTAGGAAGTTCATTGATTTGGCTCAACAACATGGCTCCCAGGATGGACAGAGCCGGAGTCAAGGTGTTGACCAGCAAGGATTAAATCCGGTTCATCAAGTTTATCCTCAGTATGCTTTTCAGGCAGCCCAGCAGAAGTCAGGTTTGACAATGCAACCTCAGCAGCAAGCAAAAATGGGATCATTGGGGCCACCATCTGGAAAGGATCAGGACATGCGATTGGGAAATATGAAAATGCAGGAACTCATGTCTAATCCGGGATCTAGTCAGGCACAAGCATCATCGTCTAAGAATTTGATGGAACATTTTACTCGTGGAGAAAAGCAGATGGACCAAGGACAGCCACCAGTCTCTGACCGAAGGAGTGACTCGAAGCCTTCAGCCCAGCCATCAGGAATGAGTCAATTCATGCCCGGAAACATGTTAAGGCCAATGCTGGCACCACAGTCTCAGCCAAGTGCCCAAACCATGCCGAATAACCAGATTGCATTCGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAACATTGATCTTTCACAGCCTGGAAATGCCAACTTAATGTCACAGCTCATTCCGCTGTTGCAGTCGAGGATTGCTACTCAACAGAAAGCAAATGAAAGCAACATGGGTGCACAATCCTCACCTGTTCCCGTGTCCAAGCAGCAGGTTACTTCTCCTCTAGTAGTGCGTGAGAGTTCTCCTCATGCTAATACATCAAGTGATGTATCTGGGCAATCTACCTCTGCAAAAGCAAAGCAGACAGTTGCCCCTTTTGTTTCAGGTTCAAATAATAGCATCTTTAACAATAGTAGCAGCATTCCTATGCAGCAGTTTTCTGTTCATGGCAGAGAAAACCAGATGCCACCTAAGCAGTCAAATACTATTGGAAATGGAATGACTTCTACCCATCCCACACAGTCTGCAAACACAAGCCAGGGTGTGGATCACTCTTCCCATGTAAAAAGTTCACAAAACAATCCAGAAACATTGCAGATGCCATACCATCGACAGGTGAGTGGGTCTTCTCCACAAGCTGTGGTTCCTAATGATGGGGGTTCTGGCAACAAGAACCAGTCACAAGGTGGACTTGCTACCCGGATGGGACAGCAACACCATGGGTTCACTAAACAGCAGCTGCATGTTCTTAAAGCGCAAATACTAGCATTTAGGCGACTCAAGAAAGGTGAAGGCACACTCCCCCAAGAACTTCTACGGGCTATTGCTCCACCACCTCTTGAGCTGCAGCTACAGCAGCAATTGCTTCCTGGAGGAGGAAACATTCAGGATAAATCTTCTGGGAAAGTTTTAGAAGATCATGTGCGTCATATGGAGTCCAATGAGAAAGATTCACAGGCTGTGGCATCAAAGAATGCACAGAACATTACAAAAGAGGAAGCTTTTACCGGAGAAGAGAAAGCAACTGTATCAACCATTCAGGTGCAAGGAAAGCCTGCTGTGGTGAAGGAACCTTCTCCCTTGGTGTCTTCTGGAAAAGAAGAGCAACATTCTACATTATCTTCTGTAAAGTCAGACCATGAAGTTGAACGTGGTATTCAAAAAGCTTCTGTTAGAAGTGAGATTCCAGTTGATAGGGGAAAGTCCGTTGCATCACAGGTCACTGTATCCGATGCCATGCAAGTAAAAAAGCCTGCACAATCAAGCACTGTACCGCAGCCAAAAGATGTTAGCTCTGCTAGAAAGTATCATGGACCTCTGTTTGATTTCCCCTTTTTCACTAGGAAATATGACTCTATTGGTTCAGGGGTGATGGTAAATAATAACAACAACAATAATAATCTAGCATTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATCAAGAAGATTGGTGGGCTTTTGGCAGTAAATTTGGAAAGGAAACGGATTAGGCCCGATCTTGTCTTGCGGTTGCAAATTGAAGAAAAGAAGCTTCGACTTTTTGATTTACAGGCACGCTTAAGAGATGAAATTGATCAACATCAGCAGGAGATAATGGCAATGCCTGACAGGCCTTATCGGAAGTTTGTTCGGCTTTGCGAACGTCAGCGGATGGAGCTGTCTAGGCAAGTGCAGGTCTCCCAGAAAGCCATGAGAGAGAAGCAACTGAAATCTATTTTCCAGTGGCGTAAGAAGCTTCTAGAAGCTCACTGGGCCATTCGTGATGCGCGGACTGCACGTAACAGGGGAGTTGCCAAATATCATGAGAGGATGCTGAGGGAGTTTTCGAAAAGAAAGGATGATGATAGGAATAGAAGGATGGAAGCACTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTGGAACAGCAGACTAGTATCCCAGGGGATGCAGCAGAGAGATATGCTGTTTTATCATCTTTCTTGAGTCAGACTGAGGAATATCTTCATAAGCTTGGAAGTAAAATAACAGCAGCTAAGAGTCAGCAAGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGTTTACAGGGTCTCTCAGAGGAAGAAGTTAGGGCGGCAGCGGCTTGTGCTGGAGAGGAAGTAATGATTAGAAATCGATTTATTGAAATGAATGCACCTAGAGACGGTTCATCTGTTAACAAGTATTATAGTCTTGCACATGCTGTGAACGAGAGGGTCGTAAGGCAACCCTCAATGTTACGGACTGGAAACTTAAGAGATTATCAACTTGTTGGGTTGCAATGGATGCTTTCTCTGTATAACAACAAATTAAATGGAATATTAGCAGATGAAATGGGTCTTGGGAAAACAGTGCAGGTAATGGCATTGATTGCATATTTAATGGAGTTCAAAGGGAACTATGGGCCGCATCTCATAATTGTTCCAAATGCTGTCTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTGTCCTGCATTTATTATGTTGGTGGGAAAGATCAACGGGCAAAATTGTTTTCCCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTCGTGACAACTTATGAGTTCATCATGTACGATCGGTCCAAACTCTCCAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAAAGGATGAAAGACAGGGAATCGGTTCTAGCACGTGATCTTGATAGGTATCGTTGCCAAAGACGCTTGCTCTTGACAGGAACACCATTACAGAATGATTTAAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTATTTGATAATCGGAAAGCATTTCATGATTGGTTTTCAAAACCCTTTCAAAAGGAAGCCCCTACACCAAATGCAGAAGATGACTGGCTTGAAACTGAAAAAAAGGTTATCATCATTCACCGACTTCATCAAATTTTAGAGCCTTTTATGCTTAGGCGGCGTGTTGAAGACGTGGAAGGTGCACTCCCGCCTAAGATCTCCATTGTTTTAAGGTGTAAAATGTCGGCTATTCAAAGTGCTGTATATGACTGGATCAAATCAACAGGCACTATTCGAGTAGATCCTGAAGAAGAGAAGCTAAGGGTTCAAAAAAATCCACAATACCAGCCCAAAGTGTACAAAACATTAAATAATAGATGTATGGAACTGCGAAAAACTTGCAATCATCCGTTGCTCAATTACCCATTCTTCAATGATTTTTCCAAGGATTTCCTTGTAAGATCTTGTGGGAAATTATGGATCCTGGACAGGATCCTTGTTAAACTTCAGAGAACAGGGCATCGAGTACTTCTTTTCAGCACCATGACAAAACTCCTTGATATTTTGGAAGAATACTTGCAGTGGCGTCATCTTATCTACAGAAGAATTGATGGAACAACCAGTTTAGAAGACCGTGAGTCAGCTATAGTGGATTTTAACAGACCTGGTTCAGACTGCTTTATCTTCTTACTTAGTATTCGTGCTGCCGGACGGGGTCTTAATCTCCAGTCTGCTGATACGGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAGCAGGCTGTTGCTAGAGCCCATCGCATTGGACAGAAGAGAGAAGTCAAGGTCATCTATCTGGAAGCAGTTGTTGACAAAATGGCTAGCCATCTGAAAGAGGATGAACTACGAAGTGGAGGTACAGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGGTATATCGGATCAATTGAGAGCCTCATAAGAAGCAACATTCAACAATACAAGATTGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACAACTCATGAAGAGAGACGTATGACTTTGGAAACCTTACTGCATGATGAAGAGAGGTACCAAGAAACTCTTCATGATGTTCCCTCATTGCAGGAGGTTAATCGCATGATTGCTAGAAGTGAGGAAGAAGTTGAATTGTTTGATCAGATGGACGAAGAACTTGACTGGATTGAAGAAATGACAAGGTACAACCAGCTCCCCAAATGGCTTCGAACCAGTACAAAAGAAGTAAATGCTGTGATTGCTAGTTTATCAAAAAAACCATCGAAGACCACTTTGTTGGGTGGTAATATTGGTTTGGAGTCCACTGAAATGGGCTCTGATTCATCTCCGAAAACTGAAAGAAAGAGGGGGCGGCCCAAGAAAATTCATCCTAGCTACAAGGAGTTAGATGATGACGATTGCGAATACTTTGAAACAAGTTCTGACGAGAGAAATGGATATTCTTTGCATGAAGAAGAGGGAGAAGTTGAAGAGGATGATGACTATAGTGGTGCTGTTGAGGCAACACCAATTATTAAGGAACAAGTGGAAGAGGATGTCCCTGAATGTGATGGTGGATATGAATATCCCCAGGATTCAGAAAGAGTTAGAAATAACCAGATACTAGAAGAAGCTGGTTCCTCAGGATCATCCTCAGACAGTCGGAGAGTGATGCAGACAGTGTCTCCTGTTTCTTCTCAGAAATTTGGTTCCCTCTCTGCCTTAGATGGTAGGCCAGGATCTGCTTCAAAGAGGATGCAAGATGATGTAGAGGAAGGTGAGATTGTTGTTTCTGGCGATTCTCACATGGACCAATTGGACCACCAACAATCTGGAAGTTCTAATCATGACCGTGATGAAGGTGAAGACGAACAGGTTTTGCAACCCAAGATCAAGAGGAAGCGTAGTCTTAGGGTTCGCCCTCGTCATACCATCGAGAGGCCAGAGGAGAAGTCTGGTAGTGAGACACCATCTCTTCAACGGGGAGATTCATCTCTGTTGCCATTTCATGTGGACCATAAATCTCAAGCACAGTCAAGGGCTGATTCTGAAATCAAAATATACGGAGAGCCCCATGCTGTAAAGCATGACCAAAGTGATTCATCCTCAAAAACTAAGCGAATTTTGCCTAGGAGAGGCTCTAACATGTCCAAAGTGCATGTTAAATCTGGCAGATCAAATGGCATGCCTGATCCTGTGGAAGATGCTGCTGAACCCCACAGAGAAAATTGGGAGGGAAAAGTTGGGAATATAAGTGGAACTTCAGTTTATGGCACAAAAATGTCTGAGATTGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTCCAAAGGAGAATAGACAAGGAAGGTCCTCAGATAGTACCTTTACTGACAGATTTGTGGAAGCGCTTTGAAAATTCTAGTTACGCAAGTGGATCTGGAAATAATCTCTTGGATTTACGAAAGATTGATCAGCGGATAGAGAGGTTGGAGTATAATGGAGTAATGGAGCTTGTGTCTGATGTGCAGTCTATGTTGAAAAATGGAATGCAATTTTATGGGTTTAACTATGAGGTAAGAACCGAAGCCAGGAAAGTACATGATCTATTCTTTGATATCTTGAAAATAGCTTTTGCGGAGACTGATTTTCGAGAAGCCAGAAGTGCACTCTCATTCACTAGCCCAGTTTTGACCAGCAATGCTCCATCCCCTAGAGCGGTGACTGTTGGCCCAAGCAAGAGGCACAGACTGATAAATGATGTGGAACCTGACCCAGTCCATCAACAGAAGCCACAACAACGTGCACCAATTTTCAATAGCGAAGACACAAGGGTGCGAAGCCATATGCCCCAGAAGGAATCAAGACTCGGGAGTGGAAGTGGTAACAGTCGAGACTACTATCAGCAGGATGATTCTCCACCGCCTGCTCATCCAGGGGATCTGGTTATCTGCAAGAAGAAGAGAAAAGACAGGGAGAAGTCCGTGGTGAAGACTAGGACTGGATCTGCTGGCCCTGTTTCACCCCCAAGCGTGGGTCGCGGTATTAGAAGTCCAGGTCCAAATTCAGTTGCAAAACAAACTCCCCATCCGCAAGGGTGGGCGAACCAGTCTGGTCAGCCGACGAACAAGGGTGGAGGGTCGGTTGGTTGGGCAAATCCCGTGAAGAGGCTAAGGACAGATTCTGGAAAGAGACGCCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2259

Amino Acids

253.33

Weight (kDa)

8.91

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	489 - 522	2.7e-08	QLQ
ResIII	PF04851	1016 - 1176	2.5e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1020 - 1324	2.9e-84	SNF2-related domain
DEAD	PF00270	1037 - 1180	1.1e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1345 - 1458	1.5e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	3 cut(s)	1000, 2446, 3142
Acc65I	GGTACC	1 cut(s)	4659
AccB1I	GGYRCC	2 cut(s)	781, 4659
AccB7I	CCANNNNNTGG	2 cut(s)	539, 1285
AccBSI	CCGCTC	1 cut(s)	6284
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	2 cut(s)	2551, 6606
AcoI	YGGCCR	2 cut(s)	55, 105
AcsI	RAATTY	8 cut(s)	634, 2251, 3714, 4968, 5288, 5706, 5983, 6628
AcuI	CTGAAG	6 cut(s)	258, 705, 2672, 3888, 4052, 5832
AcvI	CACGTG	1 cut(s)	3476
AcyI	GRCGYC	3 cut(s)	71, 4147, 6760
AdeI	CACNNNGTG	1 cut(s)	1427
AfeI	AGCGCT	1 cut(s)	5975
AflII	CTTAAG	2 cut(s)	2341, 3049
AflIII	ACRYGT	2 cut(s)	762, 5730
AhdI	GACNNNNNGTC	1 cut(s)	4198
AhlI	ACTAGT	1 cut(s)	2702
AjiI	CACGTC	2 cut(s)	122, 3754
AjuI	GAANNNNNNNTTGG	4 cut(s)	3120, 3152, 4656, 4688
AleI	CACNNNNGTG	1 cut(s)	6398
Alw21I	GWGCWC	5 cut(s)	867, 979, 3766, 6235, 6373
Alw44I	GTGCAC	4 cut(s)	975, 3762, 6231, 6369
AlwNI	CAGNNNCTG	5 cut(s)	695, 1480, 2852, 5327, 6749
Ama87I	CYCGRG	1 cut(s)	6434
Aor51HI	AGCGCT	1 cut(s)	5975
ApaI	GGGCCC	2 cut(s)	33, 50
ApaLI	GTGCAC	4 cut(s)	975, 3762, 6231, 6369
ApoI	RAATTY	8 cut(s)	634, 2251, 3714, 4968, 5288, 5706, 5983, 6628
Asp700I	GAANNNNTTC	5 cut(s)	252, 1243, 2772, 3465, 4671
Asp718I	GGTACC	1 cut(s)	4659
AspA2I	CCTAGG	1 cut(s)	5714
AspLEI	GCGC	3 cut(s)	1498, 2551, 5976
AsuC2I	CCSGG	6 cut(s)	33, 50, 64, 600, 756, 1441
AsuII	TTCGAA	2 cut(s)	2609, 4813
AsuNHI	GCTAGC	1 cut(s)	4427
AvaI	CYCGRG	1 cut(s)	6434
AvaII	GGWCC	8 cut(s)	673, 2054, 3393, 5395, 5404, 5599, 5936, 6623
AvrII	CCTAGG	1 cut(s)	5714
AxyI	CCTNAGG	1 cut(s)	5227
BaeGI	GKGCMC	7 cut(s)	33, 50, 805, 979, 3766, 6235, 6373
BaeI	ACNNNNGTAYC	2 cut(s)	4290, 4323
BamHI	GGATCC	2 cut(s)	4041, 4053
BanI	GGYRCC	2 cut(s)	781, 4659
BanII	GRGCYC	5 cut(s)	33, 50, 4363, 4922, 5658
BarI	GAAGNNNNNNTAC	2 cut(s)	4447, 4479
BauI	CACGAG	2 cut(s)	654, 3359
BbrPI	CACGTG	1 cut(s)	3476
BbsI	GAAGAC	9 cut(s)	84, 1359, 1821, 3756, 4197, 4877, 5457, 6396, 6563
Bbv12I	GWGCWC	5 cut(s)	867, 979, 3766, 6235, 6373
BbvCI	CCTCAGC	2 cut(s)	501, 2597
BceAI	ACGGC	3 cut(s)	42, 73, 92
BcgI	CGANNNNNNTGC	2 cut(s)	3942, 3976
BciVI	GTATCC	2 cut(s)	1978, 2717
BclI	TGATCA	3 cut(s)	2356, 4744, 6037
BcnI	CCSGG	6 cut(s)	33, 50, 64, 600, 756, 1441
BcuI	ACTAGT	1 cut(s)	2702
BfmI	CTRYAG	6 cut(s)	1586, 1592, 2844, 4159, 4206, 5089
BfoI	RGCGCY	1 cut(s)	5977
BfrI	CTTAAG	2 cut(s)	2341, 3049
BfuAI	ACCTGC	3 cut(s)	1000, 2446, 3142
BfuI	GTATCC	2 cut(s)	1978, 2717
BglI	GCCNNNNNGGC	2 cut(s)	54, 2392
BglII	AGATCT	3 cut(s)	2167, 3777, 4022
BlnI	CCTAGG	1 cut(s)	5714
BmcAI	AGTACT	1 cut(s)	4089
Bme18I	GGWCC	8 cut(s)	673, 2054, 3393, 5395, 5404, 5599, 5936, 6623
BmeRI	GACNNNNNGTC	1 cut(s)	4198
BmeT110I	CYCGRG	1 cut(s)	6434
BmgBI	CACGTC	2 cut(s)	122, 3754
BmrI	ACTGGG	3 cut(s)	2542, 6245, 6335
BmtI	GCTAGC	1 cut(s)	4431
BmuI	ACTGGG	3 cut(s)	2542, 6245, 6335
BpiI	GAAGAC	9 cut(s)	84, 1359, 1821, 3756, 4197, 4877, 5457, 6396, 6563
BplI	GAGNNNNNCTC	4 cut(s)	1030, 1062, 4591, 4623
BpmI	CTGGAG	4 cut(s)	307, 1632, 2928, 4271
Bpu10I	CCTNAGC	6 cut(s)	501, 1212, 2597, 3734, 3881, 6737
Bpu14I	TTCGAA	2 cut(s)	2609, 4813
BpuEI	CTTGAG	5 cut(s)	881, 1505, 1601, 2773, 5595
BpuMI	CCSGG	6 cut(s)	33, 50, 64, 600, 756, 1441
Bsa29I	ATCGAT	1 cut(s)	2932
BsaAI	YACGTR	2 cut(s)	2561, 3476
BsaBI	GATNNNNATC	3 cut(s)	2361, 3489, 4320
BsaHI	GRCGYC	3 cut(s)	71, 4147, 6760
BsaI	GGTCTC	2 cut(s)	2464, 2873
BsaWI	WCCGGW	2 cut(s)	430, 1748
Bse21I	CCTNAGG	1 cut(s)	5227
Bse3DI	GCAATG	5 cut(s)	1331, 2388, 3083, 4688, 6271
Bse8I	GATNNNNATC	3 cut(s)	2361, 3489, 4320
BseCI	ATCGAT	1 cut(s)	2932
BseJI	GATNNNNATC	3 cut(s)	2361, 3489, 4320
BseMI	GCAATG	5 cut(s)	1331, 2388, 3083, 4688, 6271
BseRI	GAGGAG	6 cut(s)	33, 36, 1011, 1035, 1629, 5546
BseSI	GKGCMC	7 cut(s)	33, 50, 805, 979, 3766, 6235, 6373
BseX3I	CGGCCG	1 cut(s)	105
BseYI	CCCAGC	3 cut(s)	471, 726, 4583
BsgI	GTGCAG	7 cut(s)	161, 1980, 2474, 2541, 2838, 3170, 6113
Bsh1236I	CGCG	2 cut(s)	2551, 6606
Bsh1285I	CGRYCG	2 cut(s)	108, 3391
BshNI	GGYRCC	2 cut(s)	781, 4659
BshVI	ATCGAT	1 cut(s)	2932
BsiEI	CGRYCG	2 cut(s)	108, 3391
BsiHKAI	GWGCWC	5 cut(s)	867, 979, 3766, 6235, 6373
BsiHKCI	CYCGRG	1 cut(s)	6434
BslFI	GGGAC	2 cut(s)	1461, 5129
BsmBI	CGTCTC	3 cut(s)	2952, 4612, 6751
BsmFI	GGGAC	2 cut(s)	1461, 5129
BsmI	GAATGC	5 cut(s)	830, 1161, 1720, 2953, 6120
Bso31I	GGTCTC	2 cut(s)	2464, 2873
BsoBI	CYCGRG	1 cut(s)	6434
Bsp119I	TTCGAA	2 cut(s)	2609, 4813
Bsp120I	GGGCCC	2 cut(s)	29, 46
Bsp1407I	TGTACA	1 cut(s)	3918
Bsp19I	CCATGG	1 cut(s)	1459
BspDI	ATCGAT	1 cut(s)	2932
BspFNI	CGCG	2 cut(s)	2551, 6606
BspHI	TCATGA	5 cut(s)	2584, 3607, 4609, 4675, 5431
BspMAI	CTGCAG	2 cut(s)	1590, 2848
BspMI	ACCTGC	3 cut(s)	1000, 2446, 3142
BspOI	GCTAGC	1 cut(s)	4431
BspQI	GCTCTTC	2 cut(s)	1836, 4335
BspT104I	TTCGAA	2 cut(s)	2609, 4813
BspT107I	GGYRCC	2 cut(s)	781, 4659
BspTI	CTTAAG	2 cut(s)	2341, 3049
BspTNI	GGTCTC	2 cut(s)	2464, 2873
BsrBI	CCGCTC	1 cut(s)	6284
BsrDI	GCAATG	5 cut(s)	1331, 2388, 3083, 4688, 6271
BsrGI	TGTACA	1 cut(s)	3918
BssNI	GRCGYC	3 cut(s)	71, 4147, 6760
BssSI	CACGAG	2 cut(s)	654, 3359
BssT1I	CCWWGG	5 cut(s)	676, 1459, 1821, 4005, 5714
Bst2BI	CACGAG	2 cut(s)	654, 3359
BstACI	GRCGYC	3 cut(s)	71, 4147, 6760
BstAFI	CTTAAG	2 cut(s)	2341, 3049
BstAPI	GCANNNNNTGC	7 cut(s)	836, 1603, 2837, 2840, 2852, 3082, 3167
BstAUI	TGTACA	1 cut(s)	3918
BstBAI	YACGTR	2 cut(s)	2561, 3476
BstBI	TTCGAA	2 cut(s)	2609, 4813
BstDSI	CCRYGG	2 cut(s)	1459, 6549
BstENI	CCTNNNNNAGG	2 cut(s)	1614, 5718
BstFNI	CGCG	2 cut(s)	2551, 6606
BstH2I	RGCGCY	1 cut(s)	5977
BstHHI	GCGC	3 cut(s)	1498, 2551, 5976
BstMCI	CGRYCG	2 cut(s)	108, 3391
BstNSI	RCATGY	7 cut(s)	559, 766, 1487, 2999, 5734, 5747, 5773
BstSFI	CTRYAG	6 cut(s)	1586, 1592, 2844, 4159, 4206, 5089
BstSLI	GKGCMC	7 cut(s)	33, 50, 805, 979, 3766, 6235, 6373
BstUI	CGCG	2 cut(s)	2551, 6606
BstV2I	GAAGAC	9 cut(s)	84, 1359, 1821, 3756, 4197, 4877, 5457, 6396, 6563
BstXI	CCANNNNNNTGG	4 cut(s)	4370, 4882, 4915, 5417
BstZI	CGGCCG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	2932
Bsu36I	CCTNAGG	1 cut(s)	5227
BsuI	GTATCC	2 cut(s)	1978, 2717
BsuTUI	ATCGAT	1 cut(s)	2932
BtgI	CCRYGG	2 cut(s)	1459, 6549
BtgZI	GCGATG	1 cut(s)	4349
BtrI	CACGTC	2 cut(s)	122, 3754
BtsI	GCAGTG	1 cut(s)	4148
BtsIMutI	CAGTG	9 cut(s)	1962, 2007, 2510, 2530, 2648, 3153, 4148, 4908, 5271
BveI	ACCTGC	3 cut(s)	1000, 2446, 3142
CaiI	CAGNNNCTG	5 cut(s)	695, 1480, 2852, 5327, 6749
CciI	TCATGA	5 cut(s)	2584, 3607, 4609, 4675, 5431
CfoI	GCGC	3 cut(s)	1498, 2551, 5976
ClaI	ATCGAT	1 cut(s)	2932
CseI	GACGC	4 cut(s)	1655, 3513, 4136, 6768
CsiI	ACCWGGT	1 cut(s)	4225
DraI	TTTAAA	2 cut(s)	3543, 3564
DraIII	CACNNNGTG	1 cut(s)	1427
DriI	GACNNNNNGTC	1 cut(s)	4198
EaeI	YGGCCR	2 cut(s)	55, 105
EagI	CGGCCG	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	4198
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	5 cut(s)	676, 1459, 1821, 4005, 5714
Eco147I	AGGCCT	1 cut(s)	2395
Eco24I	GRGCYC	5 cut(s)	33, 50, 4363, 4922, 5658
Eco31I	GGTCTC	2 cut(s)	2464, 2873
Eco32I	GATATC	1 cut(s)	6184
Eco47I	GGWCC	8 cut(s)	673, 2054, 3393, 5395, 5404, 5599, 5936, 6623
Eco47III	AGCGCT	1 cut(s)	5975
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	6 cut(s)	258, 705, 2672, 3888, 4052, 5832
Eco72I	CACGTG	1 cut(s)	3476
Eco81I	CCTNAGG	1 cut(s)	5227
Eco88I	CYCGRG	1 cut(s)	6434
EcoNI	CCTNNNNNAGG	2 cut(s)	1614, 5718
EcoO109I	RGGNCCY	1 cut(s)	5936
EcoRV	GATATC	1 cut(s)	6184
EcoT14I	CCWWGG	5 cut(s)	676, 1459, 1821, 4005, 5714
EcoT38I	GRGCYC	5 cut(s)	33, 50, 4363, 4922, 5658
ErhI	CCWWGG	5 cut(s)	676, 1459, 1821, 4005, 5714
Esp3I	CGTCTC	3 cut(s)	2952, 4612, 6751
FalI	AAGNNNNNCTT	8 cut(s)	1416, 1448, 2157, 2189, 4656, 4688, 5830, 5862
FaqI	GGGAC	2 cut(s)	1461, 5129
FauI	CCCGC	2 cut(s)	20, 3777
FauNDI	CATATG	3 cut(s)	1671, 2155, 6411
FbaI	TGATCA	3 cut(s)	2356, 4744, 6037
FblI	GTMKAC	1 cut(s)	68
FriOI	GRGCYC	5 cut(s)	33, 50, 4363, 4922, 5658
GlaI	GCGC	3 cut(s)	1497, 2550, 5975
GsaI	CCCAGC	3 cut(s)	475, 730, 4587
GsuI	CTGGAG	4 cut(s)	307, 1632, 2928, 4271
HaeII	RGCGCY	1 cut(s)	5977
HgaI	GACGC	4 cut(s)	1655, 3513, 4136, 6768
HhaI	GCGC	3 cut(s)	1498, 2551, 5976
Hin1I	GRCGYC	3 cut(s)	71, 4147, 6760
Hin6I	GCGC	3 cut(s)	1496, 2549, 5974
HinP1I	GCGC	3 cut(s)	1496, 2549, 5974
HincII	GTYRAC	5 cut(s)	69, 114, 412, 2974, 4417
HindII	GTYRAC	5 cut(s)	69, 114, 412, 2974, 4417
HindIII	AAGCTT	5 cut(s)	1740, 1905, 2312, 2516, 2780
HpaI	GTTAAC	1 cut(s)	2974
Hpy99I	CGWCG	4 cut(s)	73, 76, 79, 6691
Hsp92I	GRCGYC	3 cut(s)	71, 4147, 6760
HspAI	GCGC	3 cut(s)	1496, 2549, 5974
KpnI	GGTACC	1 cut(s)	4663
Ksp22I	TGATCA	3 cut(s)	2356, 4744, 6037
KspAI	GTTAAC	1 cut(s)	2974
LguI	GCTCTTC	2 cut(s)	1836, 4335
LmnI	GCTCC	7 cut(s)	326, 383, 1573, 2437, 4803, 6076, 6274
MabI	ACCWGGT	1 cut(s)	4225
MbiI	CCGCTC	1 cut(s)	6284
MfeI	CAATTG	4 cut(s)	188, 1601, 4515, 5399
MmeI	TCCRAC	2 cut(s)	5228, 6036
MroXI	GAANNNNTTC	5 cut(s)	252, 1243, 2772, 3465, 4671
MslI	CAYNNNNRTG	6 cut(s)	1166, 1781, 4913, 5436, 5864, 6398
MspA1I	CMGCKG	6 cut(s)	922, 1480, 2431, 2849, 2897, 6043
MspCI	CTTAAG	2 cut(s)	2341, 3049
MunI	CAATTG	4 cut(s)	188, 1601, 4515, 5399
Mva1269I	GAATGC	5 cut(s)	830, 1161, 1720, 2953, 6120
MvnI	CGCG	2 cut(s)	2551, 6606
NciI	CCSGG	6 cut(s)	33, 50, 64, 600, 756, 1441
NcoI	CCATGG	1 cut(s)	1459
NdeI	CATATG	3 cut(s)	1671, 2155, 6411
NheI	GCTAGC	1 cut(s)	4427
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	7 cut(s)	707, 906, 1419, 1960, 3361, 3555, 6286
NspI	RCATGY	7 cut(s)	559, 766, 1487, 2999, 5734, 5747, 5773
NspV	TTCGAA	2 cut(s)	2609, 4813
OliI	CACNNNNGTG	1 cut(s)	6398
PaeI	GCATGC	1 cut(s)	5773
PagI	TCATGA	5 cut(s)	2584, 3607, 4609, 4675, 5431
PasI	CCCWGGG	1 cut(s)	2711
PceI	AGGCCT	1 cut(s)	2395
PciI	ACATGT	2 cut(s)	762, 5730
PciSI	GCTCTTC	2 cut(s)	1836, 4335
PcsI	WCGNNNNNNNCGW	1 cut(s)	3012
PctI	GAATGC	5 cut(s)	830, 1161, 1720, 2953, 6120
PdmI	GAANNNNTTC	5 cut(s)	252, 1243, 2772, 3465, 4671
PflFI	GACNNNGTC	4 cut(s)	73, 4275, 5266, 6341
PflMI	CCANNNNNTGG	2 cut(s)	539, 1285
PfoI	TCCNGGA	3 cut(s)	598, 1609, 4044
Ple19I	CGATCG	1 cut(s)	3391
PmaCI	CACGTG	1 cut(s)	3476
PmlI	CACGTG	1 cut(s)	3476
Ppu21I	YACGTR	2 cut(s)	2561, 3476
PpuMI	RGGWCCY	1 cut(s)	5936
PscI	ACATGT	2 cut(s)	762, 5730
Psp5II	RGGWCCY	1 cut(s)	5936
PspCI	CACGTG	1 cut(s)	3476
PspFI	CCCAGC	3 cut(s)	471, 726, 4583
PspOMI	GGGCCC	2 cut(s)	29, 46
PspPPI	RGGWCCY	1 cut(s)	5936
PstI	CTGCAG	2 cut(s)	1590, 2848
PstNI	CAGNNNCTG	5 cut(s)	695, 1480, 2852, 5327, 6749
PsyI	GACNNNGTC	4 cut(s)	73, 4275, 5266, 6341
PvuI	CGATCG	1 cut(s)	3391
PvuII	CAGCTG	2 cut(s)	1480, 2849
RseI	CAYNNNNRTG	6 cut(s)	1166, 1781, 4913, 5436, 5864, 6398
SalI	GTCGAC	1 cut(s)	67
SapI	GCTCTTC	2 cut(s)	1836, 4335
ScaI	AGTACT	1 cut(s)	4089
SexAI	ACCWGGT	1 cut(s)	4225
SfcI	CTRYAG	6 cut(s)	1586, 1592, 2844, 4159, 4206, 5089
SfiI	GGCCNNNNNGGCC	1 cut(s)	54
SfuI	TTCGAA	2 cut(s)	2609, 4813
SinI	GGWCC	8 cut(s)	673, 2054, 3393, 5395, 5404, 5599, 5936, 6623
SmiMI	CAYNNNNRTG	6 cut(s)	1166, 1781, 4913, 5436, 5864, 6398
SmlI	CTYRAG	7 cut(s)	860, 1520, 1580, 2341, 2752, 3049, 5610
SmoI	CTYRAG	7 cut(s)	860, 1520, 1580, 2341, 2752, 3049, 5610
SpeI	ACTAGT	1 cut(s)	2702
SphI	GCATGC	1 cut(s)	5773
SseBI	AGGCCT	1 cut(s)	2395
SspI	AATATT	2 cut(s)	3117, 4894
StuI	AGGCCT	1 cut(s)	2395
StyI	CCWWGG	5 cut(s)	676, 1459, 1821, 4005, 5714
TaqII	GACCGA	2 cut(s)	714, 3381
TatI	WGTACW	4 cut(s)	3918, 4087, 4820, 6163
TauI	GCSGC	5 cut(s)	2894, 2900, 3205, 3742, 4960
TscAI	CASTG	9 cut(s)	1969, 2014, 2510, 2537, 2655, 3153, 4148, 4915, 5271
TseFI	GTSAC	7 cut(s)	707, 906, 1419, 1960, 3361, 3555, 6286
Tsp45I	GTSAC	7 cut(s)	707, 906, 1419, 1960, 3361, 3555, 6286
TspGWI	ACGGA	6 cut(s)	1936, 2281, 3052, 3960, 5664, 6538
TspRI	CASTG	9 cut(s)	1969, 2014, 2510, 2537, 2655, 3153, 4148, 4915, 5271
Tth111I	GACNNNGTC	4 cut(s)	73, 4275, 5266, 6341
Van91I	CCANNNNNTGG	2 cut(s)	539, 1285
Vha464I	CTTAAG	2 cut(s)	2341, 3049
VneI	GTGCAC	4 cut(s)	975, 3762, 6231, 6369
VpaK11BI	GGWCC	8 cut(s)	673, 2054, 3393, 5395, 5404, 5599, 5936, 6623
XagI	CCTNNNNNAGG	2 cut(s)	1614, 5718
XapI	RAATTY	8 cut(s)	634, 2251, 3714, 4968, 5288, 5706, 5983, 6628
XbaI	TCTAGA	2 cut(s)	197, 2521
XceI	RCATGY	7 cut(s)	559, 766, 1487, 2999, 5734, 5747, 5773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1424, 5414
XmaJI	CCTAGG	1 cut(s)	5714
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	5 cut(s)	252, 1243, 2772, 3465, 4671
ZraI	GACGTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	4089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.