Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

49057671 .. 49068628

Gene Structure 10958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5850 bp

ATGCCTCAACAACCTAGGAAGTTCATCGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCTGCAAATTTGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTAGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAACAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATTCATGCCTGGAAATCTCATGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCACTGGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGAGCAACATGGGTGTACAATCGTCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAGTAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGTTCGGGCAATCACAGTGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAGGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGCCCAGTGAAAAAGATTCTCATTCACAGGCTGTGGCATCAGTGAATGGACCGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCGGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAAGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAATAATAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAGAATATAAAGAAGATTGGTGGTCTCTTGGCGGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTATGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCATCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAGGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCTGTCAACAAGTATTACAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCGCATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGCGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCATTTCAAAGGGAGGCTCCTACACCGGATGCGGACGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCAAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTTTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGCCCTGGTTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGACCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAGACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAGTGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGAAATGACCTCATCGTAGAAGAAGCTGGTTCCTCAGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGATAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTCATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACTGTGGCTCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

1949

Amino Acids

220.05

Weight (kDa)

7.31

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	386 - 419	4.7e-08	QLQ
ResIII	PF04851	914 - 1074	1.7e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	918 - 1222	2.5e-84	SNF2-related domain
DEAD	PF00270	935 - 1078	1.5e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1243 - 1356	1.3e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3998
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	2 cut(s)	1135, 3542
AccBSI	CCGCTC	1 cut(s)	5740
AccI	GTMKAC	2 cut(s)	4639, 5383
AcsI	RAATTY	6 cut(s)	238, 254, 997, 1293, 5389, 5671
AcuI	CTGAAG	9 cut(s)	104, 390, 1514, 1533, 3746, 4857, 5232, 5418, 5520
AcvI	CACGTG	1 cut(s)	3170
AdeI	CACNNNGTG	1 cut(s)	1118
AfiI	CCNNNNNNNGG	8 cut(s)	188, 209, 1082, 2017, 2458, 3988, 4201, 5205
AflII	CTTAAG	1 cut(s)	2743
AflIII	ACRYGT	1 cut(s)	5460
AhdI	GACNNNNNGTC	1 cut(s)	229
AhlI	ACTAGT	2 cut(s)	2396, 4511
AjnI	CCWGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
Alw21I	GWGCWC	2 cut(s)	546, 5769
Alw26I	GTCTC	7 cut(s)	977, 1937, 2742, 2974, 3362, 4613, 5225
AlwNI	CAGNNNCTG	5 cut(s)	767, 1171, 2546, 2563, 5480
AoxI	GGCC	6 cut(s)	200, 455, 1967, 2087, 2151, 5207
ApoI	RAATTY	6 cut(s)	238, 254, 997, 1293, 5389, 5671
ArsI	GACNNNNNNTTYG	4 cut(s)	293, 325, 1853, 1885
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	3 cut(s)	1245, 2466, 3159
AspA2I	CCTAGG	3 cut(s)	14, 896, 1037
AspLEI	GCGC	4 cut(s)	3035, 3201, 3458, 5733
AsuHPI	GGTGA	6 cut(s)	363, 783, 1150, 1232, 5141, 5321
AsuII	TTCGAA	1 cut(s)	3646
AsuNHI	GCTAGC	2 cut(s)	275, 2134
AvrII	CCTAGG	3 cut(s)	14, 896, 1037
AxyI	CCTNAGG	3 cut(s)	1131, 1236, 4918
BamHI	GGATCC	2 cut(s)	3735, 3747
BanI	GGYRCC	2 cut(s)	1135, 3542
BanII	GRGCYC	4 cut(s)	1362, 2769, 4057, 5769
BauI	CACGAG	2 cut(s)	339, 5768
BbrPI	CACGTG	1 cut(s)	3170
BbsI	GAAGAC	2 cut(s)	657, 3570
Bbv12I	GWGCWC	2 cut(s)	546, 5769
BceAI	ACGGC	4 cut(s)	407, 889, 3212, 3403
BcgI	CGANNNNNNTGC	6 cut(s)	320, 354, 1031, 1065, 3636, 3670
BciT130I	CCWGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
BclI	TGATCA	5 cut(s)	2050, 4438, 4486, 5485, 5725
BcoDI	GTCTC	7 cut(s)	977, 1937, 2742, 2974, 3362, 4613, 5225
BcuI	ACTAGT	2 cut(s)	2396, 4511
BfmI	CTRYAG	7 cut(s)	1283, 1542, 1614, 2538, 3900, 5472, 5491
BfoI	RGCGCY	1 cut(s)	3202
BfrI	CTTAAG	1 cut(s)	2743
BfuAI	ACCTGC	1 cut(s)	679
BglI	GCCNNNNNGGC	2 cut(s)	804, 2086
BglII	AGATCT	2 cut(s)	1972, 3471
BlnI	CCTAGG	3 cut(s)	14, 896, 1037
Bme1390I	CCNGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmrFI	CCNGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
BmrI	ACTGGG	1 cut(s)	1356
BmtI	GCTAGC	2 cut(s)	279, 2138
BmuI	ACTGGG	1 cut(s)	1356
BpiI	GAAGAC	2 cut(s)	657, 3570
BplI	GAGNNNNNCTC	4 cut(s)	709, 741, 4285, 4317
BpmI	CTGGAG	9 cut(s)	657, 1323, 2622, 3965, 4173, 4710, 4788, 5091, 5585
Bpu10I	CCTNAGC	4 cut(s)	808, 2447, 3428, 3575
Bpu14I	TTCGAA	1 cut(s)	3646
BpuEI	CTTGAG	5 cut(s)	560, 687, 3006, 3386, 5277
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	3170
BsaBI	GATNNNNATC	2 cut(s)	3183, 4014
BsaI	GGTCTC	2 cut(s)	977, 1937
BsaWI	WCCGGW	1 cut(s)	3343
BsaXI	ACNNNNNCTCC	8 cut(s)	61, 91, 2595, 2625, 4146, 4176, 5756, 5786
Bsc4I	CCNNNNNNNGG	8 cut(s)	188, 209, 1082, 2017, 2458, 3988, 4201, 5205
Bse21I	CCTNAGG	3 cut(s)	1131, 1236, 4918
Bse3DI	GCAATG	6 cut(s)	168, 1019, 1800, 2082, 3221, 4382
Bse8I	GATNNNNATC	2 cut(s)	3183, 4014
BseBI	CCWGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
BseCI	ATCGAT	1 cut(s)	27
BseJI	GATNNNNATC	2 cut(s)	3183, 4014
BseLI	CCNNNNNNNGG	8 cut(s)	188, 209, 1082, 2017, 2458, 3988, 4201, 5205
BseMI	GCAATG	6 cut(s)	168, 1019, 1800, 2082, 3221, 4382
BseRI	GAGGAG	6 cut(s)	690, 714, 1119, 2534, 4484, 5620
BseYI	CCCAGC	3 cut(s)	411, 1701, 4277
BsgI	GTGCAG	4 cut(s)	2168, 2235, 2532, 3978
BshFI	GGCC	6 cut(s)	202, 457, 1969, 2089, 2153, 5209
BshNI	GGYRCC	2 cut(s)	1135, 3542
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	546, 5769
BsiSI	CCGG	1 cut(s)	3344
BslFI	GGGAC	1 cut(s)	5545
BslI	CCNNNNNNNGG	8 cut(s)	188, 209, 1082, 2017, 2458, 3988, 4201, 5205
BsmAI	GTCTC	7 cut(s)	977, 1937, 2742, 2974, 3362, 4613, 5225
BsmFI	GGGAC	1 cut(s)	5545
BsmI	GAATGC	2 cut(s)	1485, 2647
BsnI	GGCC	6 cut(s)	202, 457, 1969, 2089, 2153, 5209
Bso31I	GGTCTC	2 cut(s)	977, 1937
Bsp119I	TTCGAA	1 cut(s)	3646
Bsp1286I	GDGCHC	5 cut(s)	546, 1362, 2769, 4057, 5769
Bsp1407I	TGTACA	3 cut(s)	655, 2842, 3852
BspANI	GGCC	6 cut(s)	202, 457, 1969, 2089, 2153, 5209
BspDI	ATCGAT	1 cut(s)	27
BspHI	TCATGA	5 cut(s)	450, 2278, 3301, 4303, 5113
BspMAI	CTGCAG	2 cut(s)	2542, 5476
BspMI	ACCTGC	1 cut(s)	679
BspOI	GCTAGC	2 cut(s)	279, 2138
BspQI	GCTCTTC	1 cut(s)	4302
BspT104I	TTCGAA	1 cut(s)	3646
BspT107I	GGYRCC	2 cut(s)	1135, 3542
BspTI	CTTAAG	1 cut(s)	2743
BspTNI	GGTCTC	2 cut(s)	977, 1937
BsrBI	CCGCTC	1 cut(s)	5740
BsrDI	GCAATG	6 cut(s)	168, 1019, 1800, 2082, 3221, 4382
BsrGI	TGTACA	3 cut(s)	655, 2842, 3852
BssSI	CACGAG	2 cut(s)	339, 5768
BssT1I	CCWWGG	6 cut(s)	14, 896, 967, 1037, 3606, 4644
Bst2BI	CACGAG	2 cut(s)	339, 5768
Bst2UI	CCWGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
Bst6I	CTCTTC	7 cut(s)	1895, 1992, 2933, 4067, 4302, 4737, 5208
BstAFI	CTTAAG	1 cut(s)	2743
BstAUI	TGTACA	3 cut(s)	655, 2842, 3852
BstBAI	YACGTR	1 cut(s)	3170
BstBI	TTCGAA	1 cut(s)	3646
BstH2I	RGCGCY	1 cut(s)	3202
BstHHI	GCGC	4 cut(s)	3035, 3201, 3458, 5733
BstMAI	GTCTC	7 cut(s)	977, 1937, 2742, 2974, 3362, 4613, 5225
BstNI	CCWGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
BstNSI	RCATGY	6 cut(s)	229, 484, 1178, 1352, 2693, 5464
BstSCI	CCNGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
BstSFI	CTRYAG	7 cut(s)	1283, 1542, 1614, 2538, 3900, 5472, 5491
BstV2I	GAAGAC	2 cut(s)	657, 3570
BstX2I	RGATCY	7 cut(s)	825, 1972, 3471, 3716, 3735, 3747, 5015
BstXI	CCANNNNNNTGG	2 cut(s)	583, 4064
BstYI	RGATCY	7 cut(s)	825, 1972, 3471, 3716, 3735, 3747, 5015
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	3 cut(s)	1131, 1236, 4918
BsuRI	GGCC	6 cut(s)	202, 457, 1969, 2089, 2153, 5209
BsuTUI	ATCGAT	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	3842
BtsIMutI	CAGTG	9 cut(s)	509, 1108, 1369, 1404, 1742, 2224, 3842, 4158, 5347
BveI	ACCTGC	1 cut(s)	679
CaiI	CAGNNNCTG	5 cut(s)	767, 1171, 2546, 2563, 5480
CciI	TCATGA	5 cut(s)	450, 2278, 3301, 4303, 5113
CfoI	GCGC	4 cut(s)	3035, 3201, 3458, 5733
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	2108
DraI	TTTAAA	1 cut(s)	3258
DraIII	CACNNNGTG	1 cut(s)	1118
DrdI	GACNNNNNNGTC	1 cut(s)	3998
DriI	GACNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	3998
Eam1104I	CTCTTC	7 cut(s)	1895, 1992, 2933, 4067, 4302, 4737, 5208
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	7 cut(s)	1895, 1992, 2933, 4067, 4302, 4737, 5208
Ecl136II	GAGCTC	1 cut(s)	5767
Eco130I	CCWWGG	6 cut(s)	14, 896, 967, 1037, 3606, 4644
Eco147I	AGGCCT	3 cut(s)	2089, 2153, 5209
Eco24I	GRGCYC	4 cut(s)	1362, 2769, 4057, 5769
Eco31I	GGTCTC	2 cut(s)	977, 1937
Eco32I	GATATC	2 cut(s)	3185, 4730
Eco53kI	GAGCTC	1 cut(s)	5767
Eco57I	CTGAAG	9 cut(s)	104, 390, 1514, 1533, 3746, 4857, 5232, 5418, 5520
Eco72I	CACGTG	1 cut(s)	3170
Eco81I	CCTNAGG	3 cut(s)	1131, 1236, 4918
EcoICRI	GAGCTC	1 cut(s)	5767
EcoO109I	RGGNCCY	2 cut(s)	200, 5624
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
EcoRV	GATATC	2 cut(s)	3185, 4730
EcoT14I	CCWWGG	6 cut(s)	14, 896, 967, 1037, 3606, 4644
EcoT22I	ATGCAT	1 cut(s)	4740
EcoT38I	GRGCYC	4 cut(s)	1362, 2769, 4057, 5769
ErhI	CCWWGG	6 cut(s)	14, 896, 967, 1037, 3606, 4644
FalI	AAGNNNNNCTT	8 cut(s)	102, 134, 1851, 1883, 3444, 3476, 5518, 5550
FaqI	GGGAC	1 cut(s)	5545
FauI	CCCGC	2 cut(s)	1687, 3429
FauNDI	CATATG	2 cut(s)	1849, 5329
FbaI	TGATCA	5 cut(s)	2050, 4438, 4486, 5485, 5725
FblI	GTMKAC	2 cut(s)	4639, 5383
FriOI	GRGCYC	4 cut(s)	1362, 2769, 4057, 5769
GlaI	GCGC	4 cut(s)	3034, 3200, 3457, 5732
GsaI	CCCAGC	3 cut(s)	415, 1705, 4281
GsuI	CTGGAG	9 cut(s)	657, 1323, 2622, 3965, 4173, 4710, 4788, 5091, 5585
HaeII	RGCGCY	1 cut(s)	3202
HaeIII	GGCC	6 cut(s)	202, 457, 1969, 2089, 2153, 5209
HapII	CCGG	1 cut(s)	3344
HgaI	GACGC	1 cut(s)	2108
HhaI	GCGC	4 cut(s)	3035, 3201, 3458, 5733
Hin6I	GCGC	4 cut(s)	3033, 3199, 3456, 5731
HinP1I	GCGC	4 cut(s)	3033, 3199, 3456, 5731
HincII	GTYRAC	5 cut(s)	82, 2668, 4111, 4640, 5384
HindII	GTYRAC	5 cut(s)	82, 2668, 4111, 4640, 5384
HindIII	AAGCTT	2 cut(s)	111, 2474
HpaII	CCGG	1 cut(s)	3344
HphI	GGTGA	6 cut(s)	363, 783, 1150, 1232, 5141, 5321
Hpy99I	CGWCG	3 cut(s)	4317, 5066, 5388
HpyCH4IV	ACGT	3 cut(s)	1576, 2032, 3169
HpySE526I	ACGT	3 cut(s)	1576, 2032, 3169
HspAI	GCGC	4 cut(s)	3033, 3199, 3456, 5731
Ksp22I	TGATCA	5 cut(s)	2050, 4438, 4486, 5485, 5725
LguI	GCTCTTC	1 cut(s)	4302
MaeII	ACGT	3 cut(s)	1576, 2032, 3169
MbiI	CCGCTC	1 cut(s)	5740
MfeI	CAATTG	1 cut(s)	4209
MflI	RGATCY	7 cut(s)	825, 1972, 3471, 3716, 3735, 3747, 5015
MhlI	GDGCHC	5 cut(s)	546, 1362, 2769, 4057, 5769
MlyI	GAGTC	6 cut(s)	79, 1772, 3393, 4315, 4607, 5766
MmeI	TCCRAC	6 cut(s)	1539, 2035, 4864, 4919, 5087, 5269
Mph1103I	ATGCAT	1 cut(s)	4740
MroXI	GAANNNNTTC	3 cut(s)	1245, 2466, 3159
MslI	CAYNNNNRTG	5 cut(s)	29, 851, 4094, 4344, 5118
MspA1I	CMGCKG	6 cut(s)	592, 1171, 2495, 2543, 2591, 3962
MspCI	CTTAAG	1 cut(s)	2743
MspI	CCGG	1 cut(s)	3344
MspR9I	CCNGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
MunI	CAATTG	1 cut(s)	4209
Mva1269I	GAATGC	2 cut(s)	1485, 2647
MvaI	CCWGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
NdeI	CATATG	2 cut(s)	1849, 5329
NheI	GCTAGC	2 cut(s)	275, 2134
NmuCI	GTSAC	6 cut(s)	369, 869, 1110, 3055, 3249, 5120
NsiI	ATGCAT	1 cut(s)	4740
NspI	RCATGY	6 cut(s)	229, 484, 1178, 1352, 2693, 5464
NspV	TTCGAA	1 cut(s)	3646
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	5 cut(s)	450, 2278, 3301, 4303, 5113
PceI	AGGCCT	3 cut(s)	2089, 2153, 5209
PciI	ACATGT	1 cut(s)	5460
PciSI	GCTCTTC	1 cut(s)	4302
PcsI	WCGNNNNNNNCGW	1 cut(s)	2242
PctI	GAATGC	2 cut(s)	1485, 2647
PdmI	GAANNNNTTC	3 cut(s)	1245, 2466, 3159
PfoI	TCCNGGA	2 cut(s)	1300, 3738
PleI	GAGTC	6 cut(s)	78, 1772, 3393, 4315, 4606, 5765
PmaCI	CACGTG	1 cut(s)	3170
PmlI	CACGTG	1 cut(s)	3170
PpsI	GAGTC	6 cut(s)	78, 1772, 3393, 4315, 4606, 5765
Ppu21I	YACGTR	1 cut(s)	3170
PpuMI	RGGWCCY	1 cut(s)	5624
PscI	ACATGT	1 cut(s)	5460
PshBI	ATTAAT	1 cut(s)	1467
Psp124BI	GAGCTC	1 cut(s)	5769
Psp5II	RGGWCCY	1 cut(s)	5624
Psp6I	CCWGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
PspCI	CACGTG	1 cut(s)	3170
PspFI	CCCAGC	3 cut(s)	411, 1701, 4277
PspGI	CCWGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
PspPPI	RGGWCCY	1 cut(s)	5624
PstI	CTGCAG	2 cut(s)	2542, 5476
PstNI	CAGNNNCTG	5 cut(s)	767, 1171, 2546, 2563, 5480
PsuI	RGATCY	7 cut(s)	825, 1972, 3471, 3716, 3735, 3747, 5015
PvuII	CAGCTG	6 cut(s)	592, 1171, 2495, 2543, 2591, 3962
RseI	CAYNNNNRTG	5 cut(s)	29, 851, 4094, 4344, 5118
SacI	GAGCTC	1 cut(s)	5769
SalI	GTCGAC	2 cut(s)	4638, 5382
SapI	GCTCTTC	1 cut(s)	4302
SchI	GAGTC	6 cut(s)	79, 1772, 3393, 4315, 4607, 5766
ScrFI	CCNGG	8 cut(s)	281, 441, 567, 1152, 1302, 2140, 3740, 3921
SduI	GDGCHC	5 cut(s)	546, 1362, 2769, 4057, 5769
SfcI	CTRYAG	7 cut(s)	1283, 1542, 1614, 2538, 3900, 5472, 5491
SfuI	TTCGAA	1 cut(s)	3646
SmiMI	CAYNNNNRTG	5 cut(s)	29, 851, 4094, 4344, 5118
SmlI	CTYRAG	6 cut(s)	539, 702, 2743, 3021, 3365, 5292
SmoI	CTYRAG	6 cut(s)	539, 702, 2743, 3021, 3365, 5292
SpeI	ACTAGT	2 cut(s)	2396, 4511
SphI	GCATGC	1 cut(s)	484
SseBI	AGGCCT	3 cut(s)	2089, 2153, 5209
SspI	AATATT	8 cut(s)	550, 1312, 2811, 3411, 4234, 4588, 4697, 5810
SstI	GAGCTC	1 cut(s)	5769
StuI	AGGCCT	3 cut(s)	2089, 2153, 5209
StyD4I	CCNGG	8 cut(s)	279, 439, 565, 1150, 1300, 2138, 3738, 3919
StyI	CCWWGG	6 cut(s)	14, 896, 967, 1037, 3606, 4644
TaiI	ACGT	3 cut(s)	1579, 2035, 3172
TaqI	TCGA	9 cut(s)	27, 975, 3397, 3450, 3646, 4550, 4601, 4639, 5383
TaqII	GACCGA	3 cut(s)	375, 1423, 4209
TatI	WGTACW	4 cut(s)	655, 2842, 3852, 4514
TauI	GCSGC	2 cut(s)	1987, 3436
TscAI	CASTG	9 cut(s)	516, 1108, 1369, 1404, 1749, 2231, 3842, 4165, 5347
TseFI	GTSAC	6 cut(s)	369, 869, 1110, 3055, 3249, 5120
Tsp45I	GTSAC	6 cut(s)	369, 869, 1110, 3055, 3249, 5120
TspGWI	ACGGA	2 cut(s)	2746, 3148
TspRI	CASTG	9 cut(s)	516, 1108, 1369, 1404, 1749, 2231, 3842, 4165, 5347
Vha464I	CTTAAG	1 cut(s)	2743
VspI	ATTAAT	1 cut(s)	1467
XapI	RAATTY	6 cut(s)	238, 254, 997, 1293, 5389, 5671
XbaI	TCTAGA	1 cut(s)	1270
XceI	RCATGY	6 cut(s)	229, 484, 1178, 1352, 2693, 5464
XmaJI	CCTAGG	3 cut(s)	14, 896, 1037
XmiI	GTMKAC	2 cut(s)	4639, 5383
XmnI	GAANNNNTTC	3 cut(s)	1245, 2466, 3159
Zsp2I	ATGCAT	1 cut(s)	4740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.