Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

49148876 .. 49158580

Gene Structure 9705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5634 bp

ATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGCTTGGGCAATCACAGTGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAGGAACTTCTTCGGGCGATTGCACCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCATTCACAGGCTGTGGCATCAGTGAATGGACCGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCAGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAATAGTAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCGGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCACTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCATCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAACAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCGCATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGCGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGACGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGACCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCACGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGTCCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAGACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGAAAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGAAATGACCTCATCGTAGAAGAAGCTGGTTCCTCAGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGACAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTCATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCACATGAGGTACGAACTGAAGCGAGGAAAGTACATGATCTTTTCTTTGATATCTTGAAAATTGCCTTTGCTGACACTGACTTTCGAGAAGCCAGAAGTGCACTCTCTTTTACCAGCCCAGTTGTGACCACCAATGCTCTATCCCCAAGACCAGGTGTTGGACAAAGCAAGAGACACAAATTGATAAATGAGGTGGAACCTGACCCCAGTCCTCTACAGAAGCCACTACGGGGACCTATTATCAGTAGCGAAGAAACAAGGGTAAGAAGCCATATGCCCCAGAAGGAATCAAGACTTGGGAGTGGTAGTGGTAATAGTCGGGAGCACTATCAGCCAGAGGATTCTCCATTGCTTGCTCATCCAGGAGATCTGGTTATTTGCAAGAAGAAGAGAAAAGACCGGGAAAAGACTGGGGTAAAGACTAGGAATGGACCAGCTGGCCCTGTTTCACCCCCTAGCATGGGTCGCAGTATTAGAAGTCCTGGACCAAATTCAGTCCCAAGGGAGACAAGATCAACCCAACAGGCATCACATTCACAAGGGTGGGCCAACCAGCCTTCGCAGCCTGCTCAGCCCGCAAACAGGGGTACGGGATCCGTTGGTTGGGCAAATCCGGTAAAGAGGTTAAGGACGGATTCTGGAAAGAGAAGGCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

1877

Amino Acids

212.84

Weight (kDa)

8.5

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	102 - 135	4.5e-08	QLQ
ResIII	PF04851	630 - 790	1.6e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	634 - 938	2.3e-84	SNF2-related domain
DEAD	PF00270	651 - 794	1.4e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	959 - 1072	4.9e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3146
AccB1I	GGYRCC	2 cut(s)	283, 2690
AccB7I	CCANNNNNTGG	1 cut(s)	5126
AccBSI	CCGCTC	1 cut(s)	4888
AccI	GTMKAC	2 cut(s)	3787, 4531
AcsI	RAATTY	5 cut(s)	145, 441, 4537, 4819, 5458
AcuI	CTGAAG	9 cut(s)	662, 681, 1514, 2894, 4005, 4380, 4566, 4668, 5007
AcvI	CACGTG	1 cut(s)	2318
AdeI	CACNNNGTG	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	1891
AflIII	ACRYGT	1 cut(s)	4608
AhlI	ACTAGT	2 cut(s)	1544, 3659
AjnI	CCWGG	7 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5449
AleI	CACNNNNGTG	1 cut(s)	5509
Alw21I	GWGCWC	3 cut(s)	4917, 5071, 5295
Alw26I	GTCTC	9 cut(s)	125, 1085, 1890, 2122, 2510, 3761, 4373, 5134, 5468
Alw44I	GTGCAC	1 cut(s)	5067
AlwNI	CAGNNNCTG	5 cut(s)	319, 869, 1694, 1711, 4628
AoxI	GGCC	7 cut(s)	1115, 1235, 1299, 4355, 5407, 5514, 5618
ApaLI	GTGCAC	1 cut(s)	5067
ApoI	RAATTY	5 cut(s)	145, 441, 4537, 4819, 5458
ArsI	GACNNNNNNTTYG	2 cut(s)	1001, 1033
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	3 cut(s)	393, 1614, 2307
AspA2I	CCTAGG	2 cut(s)	44, 185
AspLEI	GCGC	4 cut(s)	2183, 2349, 2606, 4881
AsuC2I	CCSGG	1 cut(s)	5369
AsuHPI	GGTGA	5 cut(s)	298, 380, 4289, 4469, 5409
AsuII	TTCGAA	1 cut(s)	2794
AsuNHI	GCTAGC	1 cut(s)	1282
AvrII	CCTAGG	2 cut(s)	44, 185
AxyI	CCTNAGG	3 cut(s)	279, 384, 4066
BaeGI	GKGCMC	1 cut(s)	5071
BamHI	GGATCC	3 cut(s)	2883, 2895, 5561
BanI	GGYRCC	2 cut(s)	283, 2690
BanII	GRGCYC	3 cut(s)	1917, 3205, 4917
BauI	CACGAG	1 cut(s)	4916
BbrPI	CACGTG	1 cut(s)	2318
BbsI	GAAGAC	1 cut(s)	2718
Bbv12I	GWGCWC	3 cut(s)	4917, 5071, 5295
BceAI	ACGGC	3 cut(s)	37, 2360, 2551
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 2784, 2818
BciT130I	CCWGG	7 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5451
BclI	TGATCA	5 cut(s)	1198, 3586, 3634, 4633, 4873
BcnI	CCSGG	1 cut(s)	5369
BcoDI	GTCTC	9 cut(s)	125, 1085, 1890, 2122, 2510, 3761, 4373, 5134, 5468
BcuI	ACTAGT	2 cut(s)	1544, 3659
BfmI	CTRYAG	8 cut(s)	431, 690, 762, 1686, 3048, 4620, 4639, 5183
BfoI	RGCGCY	1 cut(s)	2350
BfrI	CTTAAG	1 cut(s)	1891
BglI	GCCNNNNNGGC	1 cut(s)	1234
BglII	AGATCT	3 cut(s)	1120, 2619, 5335
BlnI	CCTAGG	2 cut(s)	44, 185
BlpI	GCTNAGC	1 cut(s)	5538
Bme1390I	CCNGG	8 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5369, 5451
BmrFI	CCNGG	8 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5369, 5451
BmrI	ACTGGG	3 cut(s)	5081, 5169, 5388
BmtI	GCTAGC	1 cut(s)	1286
BmuI	ACTGGG	3 cut(s)	5081, 5169, 5388
BoxI	GACNNNNGTC	1 cut(s)	5175
BpiI	GAAGAC	1 cut(s)	2718
BplI	GAGNNNNNCTC	2 cut(s)	3433, 3465
BpmI	CTGGAG	8 cut(s)	471, 1770, 3113, 3321, 3858, 3936, 4239, 4733
Bpu10I	CCTNAGC	3 cut(s)	1595, 2576, 2723
Bpu1102I	GCTNAGC	1 cut(s)	5538
Bpu14I	TTCGAA	1 cut(s)	2794
BpuEI	CTTGAG	3 cut(s)	2154, 2534, 4425
BpuMI	CCSGG	1 cut(s)	5369
BsaAI	YACGTR	1 cut(s)	2318
BsaBI	GATNNNNATC	2 cut(s)	2331, 3162
BsaI	GGTCTC	2 cut(s)	125, 1085
BsaJI	CCNNGG	8 cut(s)	44, 115, 185, 298, 1716, 2754, 3792, 5468
BsaWI	WCCGGW	2 cut(s)	2491, 5581
Bse21I	CCTNAGG	3 cut(s)	279, 384, 4066
Bse3DI	GCAATG	6 cut(s)	167, 948, 1230, 2369, 3530, 5315
Bse8I	GATNNNNATC	2 cut(s)	2331, 3162
BseBI	CCWGG	7 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5451
BseDI	CCNNGG	8 cut(s)	44, 115, 185, 298, 1716, 2754, 3792, 5468
BseJI	GATNNNNATC	2 cut(s)	2331, 3162
BseMI	GCAATG	6 cut(s)	167, 948, 1230, 2369, 3530, 5315
BseRI	GAGGAG	3 cut(s)	267, 3632, 4768
BseSI	GKGCMC	1 cut(s)	5071
BseYI	CCCAGC	2 cut(s)	849, 3425
BsgI	GTGCAG	4 cut(s)	1316, 1383, 1680, 3126
BshFI	GGCC	7 cut(s)	1117, 1237, 1301, 4357, 5409, 5516, 5620
BshNI	GGYRCC	2 cut(s)	283, 2690
BsiHKAI	GWGCWC	3 cut(s)	4917, 5071, 5295
BsiSI	CCGG	3 cut(s)	2492, 5368, 5582
BslFI	GGGAC	3 cut(s)	4693, 5214, 5450
BsmAI	GTCTC	9 cut(s)	125, 1085, 1890, 2122, 2510, 3761, 4373, 5134, 5468
BsmFI	GGGAC	3 cut(s)	4693, 5214, 5450
BsmI	GAATGC	2 cut(s)	633, 1795
BsnI	GGCC	7 cut(s)	1117, 1237, 1301, 4357, 5409, 5516, 5620
Bso31I	GGTCTC	2 cut(s)	125, 1085
Bsp119I	TTCGAA	1 cut(s)	2794
Bsp1286I	GDGCHC	5 cut(s)	1917, 3205, 4917, 5071, 5295
Bsp1407I	TGTACA	2 cut(s)	1990, 3000
Bsp1720I	GCTNAGC	1 cut(s)	5538
BspANI	GGCC	7 cut(s)	1117, 1237, 1301, 4357, 5409, 5516, 5620
BspHI	TCATGA	4 cut(s)	1426, 2449, 3451, 4261
BspMAI	CTGCAG	2 cut(s)	1690, 4624
BspOI	GCTAGC	1 cut(s)	1286
BspQI	GCTCTTC	1 cut(s)	3450
BspT104I	TTCGAA	1 cut(s)	2794
BspT107I	GGYRCC	2 cut(s)	283, 2690
BspTI	CTTAAG	1 cut(s)	1891
BspTNI	GGTCTC	2 cut(s)	125, 1085
BsrBI	CCGCTC	1 cut(s)	4888
BsrDI	GCAATG	6 cut(s)	167, 948, 1230, 2369, 3530, 5315
BsrGI	TGTACA	2 cut(s)	1990, 3000
BssECI	CCNNGG	8 cut(s)	44, 115, 185, 298, 1716, 2754, 3792, 5468
BssSI	CACGAG	1 cut(s)	4916
BssT1I	CCWWGG	6 cut(s)	44, 115, 185, 2754, 3792, 5468
Bst2BI	CACGAG	1 cut(s)	4916
Bst2UI	CCWGG	7 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5451
Bst6I	CTCTTC	9 cut(s)	1043, 1140, 1662, 2081, 3215, 3450, 3885, 4356, 5351
BstAFI	CTTAAG	1 cut(s)	1891
BstAPI	GCANNNNNTGC	8 cut(s)	628, 869, 1397, 1679, 1682, 1694, 2009, 4628
BstAUI	TGTACA	2 cut(s)	1990, 3000
BstBAI	YACGTR	1 cut(s)	2318
BstBI	TTCGAA	1 cut(s)	2794
BstH2I	RGCGCY	1 cut(s)	2350
BstHHI	GCGC	4 cut(s)	2183, 2349, 2606, 4881
BstMAI	GTCTC	9 cut(s)	125, 1085, 1890, 2122, 2510, 3761, 4373, 5134, 5468
BstNI	CCWGG	7 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5451
BstNSI	RCATGY	4 cut(s)	326, 500, 1841, 4612
BstPAI	GACNNNNGTC	1 cut(s)	5175
BstSCI	CCNGG	8 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5367, 5449
BstSFI	CTRYAG	8 cut(s)	431, 690, 762, 1686, 3048, 4620, 4639, 5183
BstSLI	GKGCMC	1 cut(s)	5071
BstV2I	GAAGAC	1 cut(s)	2718
BstX2I	RGATCY	8 cut(s)	1120, 2619, 2864, 2883, 2895, 4163, 5335, 5561
BstXI	CCANNNNNNTGG	1 cut(s)	3212
BstYI	RGATCY	8 cut(s)	1120, 2619, 2864, 2883, 2895, 4163, 5335, 5561
Bsu36I	CCTNAGG	3 cut(s)	279, 384, 4066
BsuRI	GGCC	7 cut(s)	1117, 1237, 1301, 4357, 5409, 5516, 5620
BtsI	GCAGTG	1 cut(s)	2990
CaiI	CAGNNNCTG	5 cut(s)	319, 869, 1694, 1711, 4628
CciI	TCATGA	4 cut(s)	1426, 2449, 3451, 4261
CfoI	GCGC	4 cut(s)	2183, 2349, 2606, 4881
CseI	GACGC	1 cut(s)	1256
CsiI	ACCWGGT	1 cut(s)	5119
DraI	TTTAAA	1 cut(s)	2406
DraIII	CACNNNGTG	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	3146
DseDI	GACNNNNNNGTC	1 cut(s)	3146
Eam1104I	CTCTTC	9 cut(s)	1043, 1140, 1662, 2081, 3215, 3450, 3885, 4356, 5351
EarI	CTCTTC	9 cut(s)	1043, 1140, 1662, 2081, 3215, 3450, 3885, 4356, 5351
Ecl136II	GAGCTC	1 cut(s)	4915
Eco130I	CCWWGG	6 cut(s)	44, 115, 185, 2754, 3792, 5468
Eco147I	AGGCCT	3 cut(s)	1237, 1301, 4357
Eco24I	GRGCYC	3 cut(s)	1917, 3205, 4917
Eco31I	GGTCTC	2 cut(s)	125, 1085
Eco32I	GATATC	3 cut(s)	2333, 3878, 5020
Eco53kI	GAGCTC	1 cut(s)	4915
Eco57I	CTGAAG	9 cut(s)	662, 681, 1514, 2894, 4005, 4380, 4566, 4668, 5007
Eco72I	CACGTG	1 cut(s)	2318
Eco81I	CCTNAGG	3 cut(s)	279, 384, 4066
EcoICRI	GAGCTC	1 cut(s)	4915
EcoO109I	RGGNCCY	2 cut(s)	4772, 5201
EcoRII	CCWGG	7 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5449
EcoRV	GATATC	3 cut(s)	2333, 3878, 5020
EcoT14I	CCWWGG	6 cut(s)	44, 115, 185, 2754, 3792, 5468
EcoT22I	ATGCAT	1 cut(s)	3888
EcoT38I	GRGCYC	3 cut(s)	1917, 3205, 4917
ErhI	CCWWGG	6 cut(s)	44, 115, 185, 2754, 3792, 5468
FalI	AAGNNNNNCTT	6 cut(s)	999, 1031, 2592, 2624, 4666, 4698
FaqI	GGGAC	3 cut(s)	4693, 5214, 5450
FauI	CCCGC	3 cut(s)	835, 2577, 5551
FauNDI	CATATG	3 cut(s)	997, 4477, 5241
FbaI	TGATCA	5 cut(s)	1198, 3586, 3634, 4633, 4873
FblI	GTMKAC	2 cut(s)	3787, 4531
FriOI	GRGCYC	3 cut(s)	1917, 3205, 4917
GlaI	GCGC	4 cut(s)	2182, 2348, 2605, 4880
GsaI	CCCAGC	2 cut(s)	853, 3429
GsuI	CTGGAG	8 cut(s)	471, 1770, 3113, 3321, 3858, 3936, 4239, 4733
HaeII	RGCGCY	1 cut(s)	2350
HaeIII	GGCC	7 cut(s)	1117, 1237, 1301, 4357, 5409, 5516, 5620
HapII	CCGG	3 cut(s)	2492, 5368, 5582
HgaI	GACGC	1 cut(s)	1256
HhaI	GCGC	4 cut(s)	2183, 2349, 2606, 4881
Hin6I	GCGC	4 cut(s)	2181, 2347, 2604, 4879
HinP1I	GCGC	4 cut(s)	2181, 2347, 2604, 4879
HincII	GTYRAC	4 cut(s)	1816, 3259, 3788, 4532
HindII	GTYRAC	4 cut(s)	1816, 3259, 3788, 4532
HindIII	AAGCTT	1 cut(s)	1622
HpaII	CCGG	3 cut(s)	2492, 5368, 5582
HphI	GGTGA	5 cut(s)	298, 380, 4289, 4469, 5409
Hpy99I	CGWCG	3 cut(s)	3465, 4214, 4536
HpyCH4IV	ACGT	4 cut(s)	724, 1180, 2317, 3703
HpySE526I	ACGT	4 cut(s)	724, 1180, 2317, 3703
HspAI	GCGC	4 cut(s)	2181, 2347, 2604, 4879
Ksp22I	TGATCA	5 cut(s)	1198, 3586, 3634, 4633, 4873
LguI	GCTCTTC	1 cut(s)	3450
MabI	ACCWGGT	1 cut(s)	5119
MaeII	ACGT	4 cut(s)	724, 1180, 2317, 3703
MbiI	CCGCTC	1 cut(s)	4888
MfeI	CAATTG	1 cut(s)	3357
MflI	RGATCY	8 cut(s)	1120, 2619, 2864, 2883, 2895, 4163, 5335, 5561
MhlI	GDGCHC	5 cut(s)	1917, 3205, 4917, 5071, 5295
MlyI	GAGTC	6 cut(s)	515, 920, 2541, 3463, 3755, 4914
MmeI	TCCRAC	6 cut(s)	1183, 4012, 4067, 4235, 4417, 5107
Mph1103I	ATGCAT	1 cut(s)	3888
MroXI	GAANNNNTTC	3 cut(s)	393, 1614, 2307
MslI	CAYNNNNRTG	4 cut(s)	3242, 3492, 4266, 5509
MspA1I	CMGCKG	6 cut(s)	319, 1643, 1691, 1739, 3110, 5405
MspCI	CTTAAG	1 cut(s)	1891
MspI	CCGG	3 cut(s)	2492, 5368, 5582
MspR9I	CCNGG	8 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5369, 5451
MunI	CAATTG	1 cut(s)	3357
Mva1269I	GAATGC	2 cut(s)	633, 1795
MvaI	CCWGG	7 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5451
NciI	CCSGG	1 cut(s)	5369
NdeI	CATATG	3 cut(s)	997, 4477, 5241
NheI	GCTAGC	1 cut(s)	1282
NmuCI	GTSAC	6 cut(s)	17, 258, 2203, 2397, 4268, 5092
NsiI	ATGCAT	1 cut(s)	3888
NspI	RCATGY	4 cut(s)	326, 500, 1841, 4612
NspV	TTCGAA	1 cut(s)	2794
OliI	CACNNNNGTG	1 cut(s)	5509
PagI	TCATGA	4 cut(s)	1426, 2449, 3451, 4261
PceI	AGGCCT	3 cut(s)	1237, 1301, 4357
PciI	ACATGT	1 cut(s)	4608
PciSI	GCTCTTC	1 cut(s)	3450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1390
PctI	GAATGC	2 cut(s)	633, 1795
PdmI	GAANNNNTTC	3 cut(s)	393, 1614, 2307
PflMI	CCANNNNNTGG	1 cut(s)	5126
PfoI	TCCNGGA	4 cut(s)	448, 2886, 5329, 5449
PleI	GAGTC	6 cut(s)	514, 920, 2541, 3463, 3754, 4913
PmaCI	CACGTG	1 cut(s)	2318
PmlI	CACGTG	1 cut(s)	2318
PpsI	GAGTC	6 cut(s)	514, 920, 2541, 3463, 3754, 4913
Ppu21I	YACGTR	1 cut(s)	2318
PpuMI	RGGWCCY	2 cut(s)	4772, 5201
PscI	ACATGT	1 cut(s)	4608
PshAI	GACNNNNGTC	1 cut(s)	5175
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	4917
Psp5II	RGGWCCY	2 cut(s)	4772, 5201
Psp6I	CCWGG	7 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5449
PspCI	CACGTG	1 cut(s)	2318
PspFI	CCCAGC	2 cut(s)	849, 3425
PspGI	CCWGG	7 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5449
PspPPI	RGGWCCY	2 cut(s)	4772, 5201
PstI	CTGCAG	2 cut(s)	1690, 4624
PstNI	CAGNNNCTG	5 cut(s)	319, 869, 1694, 1711, 4628
PsuI	RGATCY	8 cut(s)	1120, 2619, 2864, 2883, 2895, 4163, 5335, 5561
PvuII	CAGCTG	6 cut(s)	319, 1643, 1691, 1739, 3110, 5405
RseI	CAYNNNNRTG	4 cut(s)	3242, 3492, 4266, 5509
SacI	GAGCTC	1 cut(s)	4917
SalI	GTCGAC	2 cut(s)	3786, 4530
SapI	GCTCTTC	1 cut(s)	3450
SchI	GAGTC	6 cut(s)	515, 920, 2541, 3463, 3755, 4914
ScrFI	CCNGG	8 cut(s)	300, 450, 1288, 2888, 5121, 5331, 5369, 5451
SduI	GDGCHC	5 cut(s)	1917, 3205, 4917, 5071, 5295
SexAI	ACCWGGT	1 cut(s)	5119
SfcI	CTRYAG	8 cut(s)	431, 690, 762, 1686, 3048, 4620, 4639, 5183
SfuI	TTCGAA	1 cut(s)	2794
SmiMI	CAYNNNNRTG	4 cut(s)	3242, 3492, 4266, 5509
SmlI	CTYRAG	4 cut(s)	1891, 2169, 2513, 4440
SmoI	CTYRAG	4 cut(s)	1891, 2169, 2513, 4440
SpeI	ACTAGT	2 cut(s)	1544, 3659
SseBI	AGGCCT	3 cut(s)	1237, 1301, 4357
SspI	AATATT	7 cut(s)	460, 1959, 2559, 3382, 3736, 3845, 4958
SstI	GAGCTC	1 cut(s)	4917
StuI	AGGCCT	3 cut(s)	1237, 1301, 4357
StyD4I	CCNGG	8 cut(s)	298, 448, 1286, 2886, 5119, 5329, 5367, 5449
StyI	CCWWGG	6 cut(s)	44, 115, 185, 2754, 3792, 5468
TaiI	ACGT	4 cut(s)	727, 1183, 2320, 3706
TaqI	TCGA	9 cut(s)	123, 2545, 2598, 2794, 3698, 3749, 3787, 4531, 5053
TaqII	GACCGA	2 cut(s)	571, 3357
TatI	WGTACW	4 cut(s)	1990, 3000, 3662, 4999
TauI	GCSGC	2 cut(s)	1135, 2584
TseFI	GTSAC	6 cut(s)	17, 258, 2203, 2397, 4268, 5092
Tsp45I	GTSAC	6 cut(s)	17, 258, 2203, 2397, 4268, 5092
TspGWI	ACGGA	5 cut(s)	1801, 1894, 2296, 5554, 5615
Van91I	CCANNNNNTGG	1 cut(s)	5126
Vha464I	CTTAAG	1 cut(s)	1891
VneI	GTGCAC	1 cut(s)	5067
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	5 cut(s)	145, 441, 4537, 4819, 5458
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	4 cut(s)	326, 500, 1841, 4612
XmaJI	CCTAGG	2 cut(s)	44, 185
XmiI	GTMKAC	2 cut(s)	3787, 4531
XmnI	GAANNNNTTC	3 cut(s)	393, 1614, 2307
Zsp2I	ATGCAT	1 cut(s)	3888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.