Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Reverse (-)

19663902 .. 19674971

Gene Structure 11070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1134800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6774 bp

ATGCAATCTGGTGGCGGAGGAGGAGGCGGGCCCGGCCGGGGAGTGGGCCCGGCTGGCCGTGCTGGATCGACGTCATCGGCTGCTTCGCCGTCTTCATCGTCCTCGGCCGTGTCGACGCCGCAACTGGGTTTTGATTCGGTGCAGCATCAACAACATCAGCAGCAGCAGCAACAGCAGCAGCAGCAATTGGGGTCTAGACAGCCATTACACCAACAACAATTTTTAAGAAAACCTGAAGGGAATGAAGCTCTTTTAGCATATCAAGCTGCTGGTATGCAAGGAGTTTTGGGAGGGGGCGGCTCCAGTCAAATGCCTCAACAATCTAGGAAGTTCATTGATTTGGCTCAACAACATGGCTCCCAGGATGGACAGAGTCGTAGTCAAGGTGTTGACCAGCAAGCGTTAAATCCAGTTCATCAAGCATATCTTCAGTATGCTTTTCAGGCTGCCCAGCAGAAGTCAGGTTTGACAATGCAACCTCAGCAGCAAGCTAAAATGGGATTGTTGGGGCCGCCATCTGGAAAGGATCAGGACATGCGATTGGGAAATATGAAAATGCAGGAACTCATGTCTAATCAGGCACCTAGTCAGGCACAAGCATCATCTTCTAAGAATTTGACGGAACACTTTACTCGTGGAGAAAAGCAGGTGGGCCAAGGACAGCCATTAGTCTCTGACCAAAGGAGTGACTCGAAGCCTTCAGCCCAACCATCAGGCATGGGTCAATTCATGCCCGGAAACATGTTAAGGCCAATGTTGGCACCACAGTCTCAGCCAAGTGGCCAAACCATGCCAAATAACCAGATTGCGTTGGCTACTCAGTTGCAAGCATTTGCACTTGAGCACAACATTGATCTTTCACAGCTTGGAAATGCCAACTTAATGTCACAGCTCATTCCACTGTTGCAGTCGAGGATTTCTGCTCAACAAAAAGCTAATGAAAGCAACATGGGGGCACAATCCTCACCTGTTCCAGTGTCAAAGCAACAGGTTACATCTCCTCCAGTAGCAATTGAGAGTTCTCCTCGTGCTAATACATCAAGTGATGTATCTGGACAGTCTAGCTCGGCAAAAGCAAAGCAGACAGTTGCGGCTAACCCTTTTGGTTCAGGTTCAAATAGTAGCATATTTAACAATAGTAACAGCCCTATGCAGCAGTTTTCTGTTCATGGCAGAGAAAACCAGATGCCACCTAGGCAGTCAAATCCTATTGGAAATGGAATGACTTCTACCCATCCCACAGTGTCATCTGCAAACACAAGCCAGGGGGTGGATCACTCTTTTCATGTAAAAAGTCCACAAAACAATCCAGAAACATCGCAGATGCATTACCATCGACAGTTGAGTGGATCTTCTCCACAAGCTATAGTTCCTAATGATGGGGTTTCTGGCAACAAGAGCCAGTCACAAGGTGGACTGGCTACTCAGATGGGACAGCAACGCCATGGGTTCACTAAACAGCAGCTGCATGTTCTTAAAGCACAAATACTAGCATTTAGGCGACTCAAGAAAGGTGAAGGCACACTCCCTCAAGAACTTCTACGGGCTATTGCTCCACCACCTCTTGAGATGCAGCCACAGCAGCAATTGCTTCCTGGACGAGGAAACATTCATGATAAATCTTCTGGGAAAACTTTAGAAGATCATGTGCGGCATATGGAGTCCAATGAGAAAGATTCACAAGCTGTGGCATCAATGAATGCACAGAACGGTGCAAAAGAGGAAGCTTTTGCCGGAGAAGAGAAAGCAACCGTATCAACTGTTCATGTGCAAGGAGCACTCGCTGTGGTGAAGGAACCTACTCCTTTGGTGTCTTCTGGAAAAGAAGAGCAGCATTTGACTTTATCTTCTGTAAAGTCAGACCATGAAGTTGAACGTGGTATTCAAAAAGCTTCTGCTAGAAGTGAGATTAAAGTTGATAGGGGGAAGTCTGTTGCATCACAGGTCACACAGGTCGCTGTATCTGATGTCATGCAAGTTAAAAAGCCTGCACAAGCAAGCACTGTACCACTGCCAAAAGATGTTAGCTCTGCTAGAAAGTATCATGGACCTCTTTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCTTTAGGTTCAGGGGTGATGGTAAACAATAACAACAACAACAACAATAATCTAACATTGGCATATGACGTCAAAGATCTTGTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATCAAGAAGATTGGTGGTCTTTTGGCAGTAAATTTGGAAAGGAAACGGATTAGGCCCGATCTTGTCTTGCGGTTGCAAATTGAAGAAAAAAAGCTTCGACTTTCAGATTTACAGGCACGCTTAAGAGATGAAATTGATCAACATCAGCAGGAAATAATGGCAATGCCTGACAGGCCTTATCGGAAGTTTGTTCGGCTTTGCGAACGTCAGCGGATGGAGCTGTCTAGGCAAGTGCAGGCCTCTCAGAAAGCAATGAGAGAGAAGCAACTGAAATCTATATTCCAATGGCGTAAGAAGCTTTTAGAAGCTCACTGGGCCATTCGCGATGCACGGACTGCACGTAACAGGGGAGTTGCCAAATATCATGAGAGAATGCTGAGGGAATTTTCAAAGAGAAAGGATGATCATAGGAATAAAAGGATGGAAGCACTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTGGAACAGCAGACTAGTATCCCAGGGGATGCAGCAGAGAGATATGCTGTTTTATCATCTTTCCTGAGTCAGACTGAGGAATATCTTCATAAACTTGGAAGTAAAATAACAGCAGCTAAGAATCAGCAAGAGGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGTTTACAGGGTCTCTCAGAGGAAGAAGTTAGGACGGCAGCGGCTTGTGCTGGAGAGGAAGTAATGATTAGAAATCGATTTATTGAGATGAATGCACCTAGAGACAGTTCATCTGTTAACAAGTATTATAGTCTTGCACATGCTGTGAATGAAAGGGTCATAAGGCAACCCTCGATGTTACGGACTGGAAACTTAAGAGACTATCAACTTGTTGGGTTGCAATGGATGCTTTCTCTGTATAACAACAAATTAAATGGAATATTAGCAGATGAAATGGGTCTTGGGAAAACAGTACAGGTAATGGCATTGATTGCATATTTAATGGAGTTCAAGGGGAACTATGGGCCGCATCTCATAATTGTTCCAAATGCTGTCTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCCGTGTCCTGCATTTATTATGTTGGTGGGAAGGATCAACGGGCAAAATTGTTTTCTCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATTATGTATGATCGGTCTAAACTCTCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAAAGGATGAAAGACAGGGAATCGGTTCTAGCACGTGATCTTGATAGGTATCGTTGCCAAAGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTAAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTATTTGATAATCGGAAAGCATTTCATGACTGGTTTTCGAAACCCTTTCAAAAGGAAGCCCCTACACCAAATGCAGAAGATGACTGGCTTGAAACTGAAAAGAAAGTTATCATCATTCACCGACTTCATCAAATTTTAGAGCCTTTTATGCTTAGGCGGCGTGTTGAAGATGTGGAAGGTGCACTCCCGTCTAAGATCTCCATCGTTTTGAGGTGTAGAATGTCAGCCATTCAAAGTGCTGTATATGACTGGATCAAATCAACAGGCACTATTCGAGTAGATCCTGAAGAAGAGAAGCTAAGGGTTCAAAAAAATCCACAATACCAGCCCAAAGTGTACAAAACATTAAATAATAGATGTATGGAACTGCGAAAAACTTGCAATCATCCGCTGCTCAATTACCCGTTCTTCAATGATTTTTCCAAGGATTTCCTTGTAAGATCATGTGGGAAATTATGGATCCTGGACAGGATCCTTGTTAAACTTCAAAAAACAGGGCATCGAGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATTTTGGAAGAATACTTGCAGTGGCGTCATCTTGTCTTCAGAAGGATTGATGGAACAACCAGTTTAGAAGACCGTGAGTCAGCTATAGTGGATTTCAACAGACCTGGTTCAGACTGCTTTATCTTCTTACTTAGTATTCGTGCTGCGGGTCGGGGTCTTAATCTCCAGTCTGCTGATACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAGCAGGCAGTTGCTAGAGCCCATCGCATTGGACAGAAGAGAGAGGTCAAGGTCATCTATTTGGAAGCAGTTGTTGACAAAATGGCTAGCCATCAGAAGGAGGATGAACTACGAAGTGGAGGTACAGTTGATTCAGAGGATGACCTTGCTGGTAAGGACCGGTATATCGGATCAATTGAGAGCCTCATAAGAAACAATATTCAACAGTACAAGATTGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACAACTCATGAAGAGAGACGTATGACTCTGGAAACCTTACTGCATGATGAAGAGAGGTACCAAGAAACTCTTCATGATGTTCCCTCATTACAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAGATGGACGAAGAACTTGACTGGATTGAAGAAATGACAAGGTACAACCAGCTCCCCAAATGGCTTCGAACCAGTACAAAAGAAGTAAATGCTGTGATTGCTAGTTTATCAAAAAGACCATCTAAGACCACTTTGTTGGGTGGTAATGCTGGTTTGGAGTCCACTGAAATGGGCTCTGGTTCATCTCCGAAAACTGAAAGAAAGAGGGGGCGGCCCAAGAAAAATCATCCTAGCTACAAGGAGTTAGATGATGACAATGGCGAATACTTTGAAGCCAGTTCTGATGAGAATGAAGAAGAGGGAGAAGTTGAAGAGTTAGAGGATGATGAATATAGTGGTGCTGTTGAGGCAACACCAACTATTAAGGAACAAGTGGAAGAGGATGTCCTTGAATGTGAAGGTGGATACGAATATCCTAAGGATTCAGAAAGAGTTACAAACAACCACATACTAGAAGAAGCTGGTTCCTCAGGATCATCCTCAGACAGTCGGAGATTGATGCAGACGGTGTCTCCTGTTTCTTCTCAGAAATTTGGGTCCCTGTCTGCCTTAGATGGTAGGCCGGGATCTGCTTCAAAGAGGATGCAAGACGATGTAGAGGAAGGTGAGATTGTCGTATCGGGCGATTCTCACGTGGACCATTTGGACCACCAACAATCTGGAAGTTCGAATCATGACCGTGATGAAGGTGAAGACGAACAGGTTTTGCAACCCAAGATCAAGAGGAAGCGTAGCCTTCGGGTTCGCCCTCGTCATACCATAGAGAGGCCAGAGGAGAAGTCTGGTAGTGAGACACCATCTCTTCAACGGGGAGATTCATCTCTGTTGCCATTTCATGTGGACCATAAATCTCAAGCACAGTCAAGGGCTGATTCTGAAATCAAAACATATGGAGAGCCCCATGCTGTAAAGCACGACCAAAGTGATTCATCTTCAAAAACTAAGCGAATTTTGCCTAGGAGAGGCTCTAATATGTCCAAAGTGCATGTTTCACCTAAATCTGGCAGATCAAATGGCATGTCTGATCCTGCGGAAGATGCTGCTGAACCCCGCAGAGAAAATTGGGATGGAAAAGTTGGGAATACAAGTGGAACTTCTGTTTATGGCACAAAAATGTCTGAGATCGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTCCAAAGGAGAATAGATAAGGAAGGTCCTCAGATAGTACCTTTACTAACAGATTTGTGGAAGCGCATTGAAAATTCTAGTTACGCAAGTGGATCTGGAAATAATCTCTTGGATTTACGAAAGATTGATCAGCGGATAGAGAGGTTGGAGTATACTGGAGTAATGGAGCTTGTGTCCGATGTGCAGTCTATGCTGAAAAATGGAATGCAGTTTTATGGGTTTAACTATGAGGTAAGAACTGAAGCCAGGAAAGTACATGATCTTTTCTTTGATATCTTGAAAATAGCTTTTGCGGAGACTGATTTTCGAGAAGCCAGAAGTGCACTCTCATTTACTAGCCCAGTTTTGACCAGCAATGCTCCGGCTCCGTCCCCTAGAGCGGCGACCGTTGGCCTAAGCAAGAGACACAAACTGATAAATGAGGTGGAGCCTGACTCAACCCCCCAACAGAAGCCACAACAACGTGCACCAATTTTCAACAGCGAAGACACAAGGGTGCGAAGCCATATGCTCCAGAAGGAATCAAGACATGGGAGTGGAAGTGGTAACAGTCGGGACCACTATCACCAGGATGATTCTCCACCGCTTGCTCATCCAGGGGATCTGGTTATCTGCAAGAAGAAGAGGAAAGACAGGGAGAAGTCCGTGGTGAAGACTAGGACTGGATCTGCTGGCCCTGTTTCACCCCCAAGCGTGGGTCGCGGTATTAGAAGTCCAGGTCCAAATTCAGTTCCAAAACAAAACCCCCATCCGCAAGGGTGGGCTAACCAGCCTGCTCAGCCGACGAACAAGGGTGGAGGGTCGGTCGGTTGGGCCAATCCCGTGAAGAGGTTAAGGACAGATTCTGGAAAGAGACGCCCGAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2258

Amino Acids

252.57

Weight (kDa)

8.93

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	484 - 517	2.7e-08	QLQ
ResIII	PF04851	1015 - 1175	2.5e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1019 - 1323	1.4e-83	SNF2-related domain
DEAD	PF00270	1036 - 1179	1.1e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1344 - 1457	1.3e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
AatII	GACGTC	2 cut(s)	74, 2160
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	4656
AccB1I	GGYRCC	3 cut(s)	580, 760, 4656
AccB7I	CCANNNNNTGG	1 cut(s)	1270
AccBSI	CCGCTC	1 cut(s)	6281
AccI	GTMKAC	2 cut(s)	113, 6053
AccII	CGCG	2 cut(s)	2541, 6603
AcoI	YGGCCR	4 cut(s)	34, 55, 105, 781
AcsI	RAATTY	8 cut(s)	613, 2248, 2600, 3711, 5273, 5691, 5974, 6625
AcuI	CTGAAG	7 cut(s)	255, 413, 684, 2669, 3885, 4141, 6162
AcvI	CACGTG	2 cut(s)	3473, 5377
AcyI	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
AdeI	CACNNNGTG	1 cut(s)	1412
AflII	CTTAAG	2 cut(s)	2338, 3046
AflIII	ACRYGT	1 cut(s)	741
AgeI	ACCGGT	1 cut(s)	4497
AhdI	GACNNNNNGTC	1 cut(s)	4195
AhlI	ACTAGT	1 cut(s)	2699
AjuI	GAANNNNNNNTTGG	4 cut(s)	3117, 3149, 4653, 4685
AleI	CACNNNNGTG	1 cut(s)	6395
Alw21I	GWGCWC	5 cut(s)	846, 1780, 3763, 6226, 6370
Alw44I	GTGCAC	3 cut(s)	3759, 6222, 6366
AlwNI	CAGNNNCTG	3 cut(s)	1465, 2849, 6746
Ama87I	CYCGRG	1 cut(s)	6760
ApaI	GGGCCC	2 cut(s)	33, 50
ApaLI	GTGCAC	3 cut(s)	3759, 6222, 6366
ApoI	RAATTY	8 cut(s)	613, 2248, 2600, 3711, 5273, 5691, 5974, 6625
ArsI	GACNNNNNNTTYG	2 cut(s)	5747, 5779
AsiGI	ACCGGT	1 cut(s)	4497
Asp700I	GAANNNNTTC	4 cut(s)	1225, 2769, 3462, 4668
Asp718I	GGTACC	1 cut(s)	4656
AspA2I	CCTAGG	2 cut(s)	1193, 5699
AspLEI	GCGC	2 cut(s)	3504, 5967
AsuC2I	CCSGG	5 cut(s)	33, 38, 50, 735, 5307
AsuII	TTCGAA	3 cut(s)	3617, 4810, 5411
AsuNHI	GCTAGC	1 cut(s)	4424
AvaI	CYCGRG	1 cut(s)	6760
AvaII	GGWCC	9 cut(s)	2048, 4495, 5280, 5380, 5389, 5584, 5927, 6457, 6620
AvrII	CCTAGG	2 cut(s)	1193, 5699
AxyI	CCTNAGG	2 cut(s)	5160, 5212
BaeGI	GKGCMC	6 cut(s)	33, 50, 958, 3763, 6226, 6370
BaeI	ACNNNNGTAYC	2 cut(s)	4287, 4320
BalI	TGGCCA	1 cut(s)	783
BamHI	GGATCC	2 cut(s)	4038, 4050
BanI	GGYRCC	3 cut(s)	580, 760, 4656
BanII	GRGCYC	5 cut(s)	33, 50, 4360, 4919, 5643
BarI	GAAGNNNNNNTAC	2 cut(s)	4444, 4476
BauI	CACGAG	2 cut(s)	633, 1026
BbrPI	CACGTG	2 cut(s)	3473, 5377
BbsI	GAAGAC	7 cut(s)	84, 1806, 4147, 4194, 5442, 6393, 6560
Bbv12I	GWGCWC	5 cut(s)	846, 1780, 3763, 6226, 6370
BbvCI	CCTCAGC	2 cut(s)	480, 2594
BceAI	ACGGC	4 cut(s)	42, 73, 92, 2904
BcgI	CGANNNNNNTGC	4 cut(s)	1316, 1350, 3939, 3973
BciVI	GTATCC	2 cut(s)	2714, 5141
BclI	TGATCA	4 cut(s)	2353, 2620, 4741, 6028
BcnI	CCSGG	5 cut(s)	33, 38, 50, 735, 5307
BcuI	ACTAGT	1 cut(s)	2699
BfmI	CTRYAG	3 cut(s)	1365, 2841, 4203
BfoI	RGCGCY	1 cut(s)	3505
BfrI	CTTAAG	2 cut(s)	2338, 3046
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	2 cut(s)	2714, 5141
BglI	GCCNNNNNGGC	3 cut(s)	54, 1195, 2389
BglII	AGATCT	2 cut(s)	2164, 3774
BlnI	CCTAGG	2 cut(s)	1193, 5699
BlpI	GCTNAGC	1 cut(s)	6678
BmcAI	AGTACT	1 cut(s)	4086
Bme18I	GGWCC	9 cut(s)	2048, 4495, 5280, 5380, 5389, 5584, 5927, 6457, 6620
BmeRI	GACNNNNNGTC	1 cut(s)	4195
BmeT110I	CYCGRG	1 cut(s)	6760
BmrI	ACTGGG	3 cut(s)	134, 2539, 6236
BmtI	GCTAGC	1 cut(s)	4428
BmuI	ACTGGG	3 cut(s)	134, 2539, 6236
BpiI	GAAGAC	7 cut(s)	84, 1806, 4147, 4194, 5442, 6393, 6560
BplI	GAGNNNNNCTC	6 cut(s)	1009, 1041, 4588, 4620, 6320, 6352
BpmI	CTGGAG	6 cut(s)	286, 987, 2925, 4268, 6078, 6398
Bpu10I	CCTNAGC	5 cut(s)	480, 2594, 3731, 3878, 6296
Bpu1102I	GCTNAGC	1 cut(s)	6678
Bpu14I	TTCGAA	3 cut(s)	3617, 4810, 5411
BpuEI	CTTGAG	6 cut(s)	860, 1490, 1515, 1586, 3309, 5580
BpuMI	CCSGG	5 cut(s)	33, 38, 50, 735, 5307
Bsa29I	ATCGAT	1 cut(s)	2929
BsaAI	YACGTR	3 cut(s)	2558, 3473, 5377
BsaBI	GATNNNNATC	4 cut(s)	2358, 3486, 3779, 4317
BsaHI	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
BsaI	GGTCTC	1 cut(s)	2870
BsaWI	WCCGGW	1 cut(s)	4497
Bse118I	RCCGGY	1 cut(s)	4497
Bse21I	CCTNAGG	2 cut(s)	5160, 5212
Bse3DI	GCAATG	5 cut(s)	2385, 2475, 3080, 3524, 6262
Bse8I	GATNNNNATC	4 cut(s)	2358, 3486, 3779, 4317
BseCI	ATCGAT	1 cut(s)	2929
BseJI	GATNNNNATC	4 cut(s)	2358, 3486, 3779, 4317
BseMI	GCAATG	5 cut(s)	2385, 2475, 3080, 3524, 6262
BseRI	GAGGAG	5 cut(s)	33, 36, 990, 1014, 5531
BseSI	GKGCMC	6 cut(s)	33, 50, 958, 3763, 6226, 6370
BseX3I	CGGCCG	2 cut(s)	34, 105
BseYI	CCCAGC	2 cut(s)	450, 4580
BsgI	GTGCAG	6 cut(s)	161, 1974, 2471, 2538, 2835, 6104
Bsh1236I	CGCG	2 cut(s)	2541, 6603
Bsh1285I	CGRYCG	4 cut(s)	37, 108, 6288, 6708
BshNI	GGYRCC	3 cut(s)	580, 760, 4656
BshTI	ACCGGT	1 cut(s)	4497
BshVI	ATCGAT	1 cut(s)	2929
BsiEI	CGRYCG	4 cut(s)	37, 108, 6288, 6708
BsiHKAI	GWGCWC	5 cut(s)	846, 1780, 3763, 6226, 6370
BsiHKCI	CYCGRG	1 cut(s)	6760
BsiSI	CCGG	8 cut(s)	33, 37, 50, 735, 1734, 4498, 5306, 6263
BslFI	GGGAC	4 cut(s)	1446, 5266, 6256, 6470
BsmBI	CGTCTC	2 cut(s)	4609, 6748
BsmFI	GGGAC	4 cut(s)	1446, 5266, 6256, 6470
BsmI	GAATGC	4 cut(s)	1705, 2595, 2950, 6111
Bso31I	GGTCTC	1 cut(s)	2870
BsoBI	CYCGRG	1 cut(s)	6760
Bsp119I	TTCGAA	3 cut(s)	3617, 4810, 5411
Bsp120I	GGGCCC	2 cut(s)	29, 46
Bsp1407I	TGTACA	1 cut(s)	3915
Bsp1720I	GCTNAGC	1 cut(s)	6678
Bsp19I	CCATGG	1 cut(s)	1444
Bsp68I	TCGCGA	1 cut(s)	2541
BspDI	ATCGAT	1 cut(s)	2929
BspFNI	CGCG	2 cut(s)	2541, 6603
BspHI	TCATGA	6 cut(s)	1612, 2581, 3604, 4606, 4672, 5416
BspMAI	CTGCAG	1 cut(s)	2845
BspMI	ACCTGC	1 cut(s)	637
BspOI	GCTAGC	1 cut(s)	4428
BspQI	GCTCTTC	2 cut(s)	1821, 4332
BspT104I	TTCGAA	3 cut(s)	3617, 4810, 5411
BspT107I	GGYRCC	3 cut(s)	580, 760, 4656
BspTI	CTTAAG	2 cut(s)	2338, 3046
BspTNI	GGTCTC	1 cut(s)	2870
BsrBI	CCGCTC	1 cut(s)	6281
BsrDI	GCAATG	5 cut(s)	2385, 2475, 3080, 3524, 6262
BsrFI	RCCGGY	1 cut(s)	4497
BsrGI	TGTACA	1 cut(s)	3915
BssAI	RCCGGY	1 cut(s)	4497
BssNAI	GTATAC	1 cut(s)	6054
BssNI	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
BssSI	CACGAG	2 cut(s)	633, 1026
BssT1I	CCWWGG	5 cut(s)	655, 1193, 1444, 4002, 5699
Bst1107I	GTATAC	1 cut(s)	6054
Bst2BI	CACGAG	2 cut(s)	633, 1026
BstACI	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
BstAFI	CTTAAG	2 cut(s)	2338, 3046
BstAPI	GCANNNNNTGC	8 cut(s)	1588, 2552, 2834, 2837, 2849, 3079, 3164, 6091
BstAUI	TGTACA	1 cut(s)	3915
BstBAI	YACGTR	3 cut(s)	2558, 3473, 5377
BstBI	TTCGAA	3 cut(s)	3617, 4810, 5411
BstDSI	CCRYGG	2 cut(s)	1444, 6546
BstENI	CCTNNNNNAGG	2 cut(s)	1599, 5703
BstFNI	CGCG	2 cut(s)	2541, 6603
BstH2I	RGCGCY	1 cut(s)	3505
BstHHI	GCGC	2 cut(s)	3504, 5967
BstMCI	CGRYCG	4 cut(s)	37, 108, 6288, 6708
BstNSI	RCATGY	6 cut(s)	538, 745, 1472, 2996, 5732, 5764
BstSFI	CTRYAG	3 cut(s)	1365, 2841, 4203
BstSLI	GKGCMC	6 cut(s)	33, 50, 958, 3763, 6226, 6370
BstUI	CGCG	2 cut(s)	2541, 6603
BstV2I	GAAGAC	7 cut(s)	84, 1806, 4147, 4194, 5442, 6393, 6560
BstXI	CCANNNNNNTGG	4 cut(s)	4367, 4879, 4912, 5402
BstZ17I	GTATAC	1 cut(s)	6054
BstZI	CGGCCG	2 cut(s)	34, 105
Bsu15I	ATCGAT	1 cut(s)	2929
Bsu36I	CCTNAGG	2 cut(s)	5160, 5212
BsuI	GTATCC	2 cut(s)	2714, 5141
BsuTUI	ATCGAT	1 cut(s)	2929
BtgI	CCRYGG	2 cut(s)	1444, 6546
BtgZI	GCGATG	3 cut(s)	1302, 2556, 4346
BtsI	GCAGTG	2 cut(s)	2009, 4145
BtsIMutI	CAGTG	9 cut(s)	899, 981, 1248, 2001, 2009, 2527, 2645, 4145, 4905
BtuMI	TCGCGA	1 cut(s)	2541
BveI	ACCTGC	1 cut(s)	637
CaiI	CAGNNNCTG	3 cut(s)	1465, 2849, 6746
CciI	TCATGA	6 cut(s)	1612, 2581, 3604, 4606, 4672, 5416
CfoI	GCGC	2 cut(s)	3504, 5967
Cfr10I	RCCGGY	1 cut(s)	4497
ClaI	ATCGAT	1 cut(s)	2929
CseI	GACGC	3 cut(s)	124, 4133, 6765
CsiI	ACCWGGT	1 cut(s)	4222
CspAI	ACCGGT	1 cut(s)	4497
DraI	TTTAAA	2 cut(s)	3540, 3561
DraIII	CACNNNGTG	1 cut(s)	1412
DriI	GACNNNNNGTC	1 cut(s)	4195
EaeI	YGGCCR	4 cut(s)	34, 55, 105, 781
EagI	CGGCCG	2 cut(s)	34, 105
Eam1105I	GACNNNNNGTC	1 cut(s)	4195
EciI	GGCGGA	1 cut(s)	30
EclXI	CGGCCG	2 cut(s)	34, 105
Eco130I	CCWWGG	5 cut(s)	655, 1193, 1444, 4002, 5699
Eco147I	AGGCCT	2 cut(s)	2392, 2456
Eco24I	GRGCYC	5 cut(s)	33, 50, 4360, 4919, 5643
Eco31I	GGTCTC	1 cut(s)	2870
Eco32I	GATATC	1 cut(s)	6175
Eco47I	GGWCC	9 cut(s)	2048, 4495, 5280, 5380, 5389, 5584, 5927, 6457, 6620
Eco52I	CGGCCG	2 cut(s)	34, 105
Eco57I	CTGAAG	7 cut(s)	255, 413, 684, 2669, 3885, 4141, 6162
Eco72I	CACGTG	2 cut(s)	3473, 5377
Eco81I	CCTNAGG	2 cut(s)	5160, 5212
Eco88I	CYCGRG	1 cut(s)	6760
EcoNI	CCTNNNNNAGG	2 cut(s)	1599, 5703
EcoO109I	RGGNCCY	2 cut(s)	5280, 5927
EcoRV	GATATC	1 cut(s)	6175
EcoT14I	CCWWGG	5 cut(s)	655, 1193, 1444, 4002, 5699
EcoT22I	ATGCAT	1 cut(s)	1329
EcoT38I	GRGCYC	5 cut(s)	33, 50, 4360, 4919, 5643
ErhI	CCWWGG	5 cut(s)	655, 1193, 1444, 4002, 5699
Esp3I	CGTCTC	2 cut(s)	4609, 6748
FalI	AAGNNNNNCTT	6 cut(s)	411, 443, 4653, 4685, 5821, 5853
FaqI	GGGAC	4 cut(s)	1446, 5266, 6256, 6470
FauI	CCCGC	3 cut(s)	20, 4258, 5801
FauNDI	CATATG	4 cut(s)	1656, 2152, 5632, 6408
FbaI	TGATCA	4 cut(s)	2353, 2620, 4741, 6028
FblI	GTMKAC	2 cut(s)	113, 6053
FriOI	GRGCYC	5 cut(s)	33, 50, 4360, 4919, 5643
GlaI	GCGC	2 cut(s)	3503, 5966
GsaI	CCCAGC	2 cut(s)	454, 4584
GsuI	CTGGAG	6 cut(s)	286, 987, 2925, 4268, 6078, 6398
HaeII	RGCGCY	1 cut(s)	3505
HapII	CCGG	8 cut(s)	33, 37, 50, 735, 1734, 4498, 5306, 6263
HgaI	GACGC	3 cut(s)	124, 4133, 6765
HhaI	GCGC	2 cut(s)	3504, 5967
Hin1I	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
Hin6I	GCGC	2 cut(s)	3502, 5965
HinP1I	GCGC	2 cut(s)	3502, 5965
HincII	GTYRAC	4 cut(s)	114, 391, 2971, 4414
HindII	GTYRAC	4 cut(s)	114, 391, 2971, 4414
HindIII	AAGCTT	4 cut(s)	1725, 1890, 2309, 2513
HpaI	GTTAAC	1 cut(s)	2971
HpaII	CCGG	8 cut(s)	33, 37, 50, 735, 1734, 4498, 5306, 6263
Hpy99I	CGWCG	3 cut(s)	73, 118, 6688
Hsp92I	GRCGYC	5 cut(s)	71, 116, 2157, 4144, 6757
HspAI	GCGC	2 cut(s)	3502, 5965
KflI	GGGWCCC	1 cut(s)	5280
KpnI	GGTACC	1 cut(s)	4660
Ksp22I	TGATCA	4 cut(s)	2353, 2620, 4741, 6028
KspAI	GTTAAC	1 cut(s)	2971
LguI	GCTCTTC	2 cut(s)	1821, 4332
MabI	ACCWGGT	1 cut(s)	4222
MbiI	CCGCTC	1 cut(s)	6281
MfeI	CAATTG	4 cut(s)	185, 1011, 1586, 4512
MlsI	TGGCCA	1 cut(s)	783
MluNI	TGGCCA	1 cut(s)	783
MmeI	TCCRAC	2 cut(s)	5213, 6027
Mox20I	TGGCCA	1 cut(s)	783
Mph1103I	ATGCAT	1 cut(s)	1329
MroXI	GAANNNNTTC	4 cut(s)	1225, 2769, 3462, 4668
MscI	TGGCCA	1 cut(s)	783
MslI	CAYNNNNRTG	6 cut(s)	4910, 5421, 5855, 6395, 6435, 6471
Msp20I	TGGCCA	1 cut(s)	783
MspA1I	CMGCKG	6 cut(s)	1465, 2428, 2846, 2894, 3970, 6034
MspCI	CTTAAG	2 cut(s)	2338, 3046
MspI	CCGG	8 cut(s)	33, 37, 50, 735, 1734, 4498, 5306, 6263
MunI	CAATTG	4 cut(s)	185, 1011, 1586, 4512
Mva1269I	GAATGC	4 cut(s)	1705, 2595, 2950, 6111
MvnI	CGCG	2 cut(s)	2541, 6603
NciI	CCSGG	5 cut(s)	33, 38, 50, 735, 5307
NcoI	CCATGG	1 cut(s)	1444
NdeI	CATATG	4 cut(s)	1656, 2152, 5632, 6408
NheI	GCTAGC	1 cut(s)	4424
NmeAIII	GCCGAG	2 cut(s)	83, 1046
NmuCI	GTSAC	6 cut(s)	686, 885, 1404, 1945, 3358, 3552
NruI	TCGCGA	1 cut(s)	2541
NsiI	ATGCAT	1 cut(s)	1329
NspI	RCATGY	6 cut(s)	538, 745, 1472, 2996, 5732, 5764
NspV	TTCGAA	3 cut(s)	3617, 4810, 5411
OliI	CACNNNNGTG	1 cut(s)	6395
PagI	TCATGA	6 cut(s)	1612, 2581, 3604, 4606, 4672, 5416
PaqCI	CACCTGC	1 cut(s)	637
PasI	CCCWGGG	1 cut(s)	2708
PceI	AGGCCT	2 cut(s)	2392, 2456
PciI	ACATGT	1 cut(s)	741
PciSI	GCTCTTC	2 cut(s)	1821, 4332
PcsI	WCGNNNNNNNCGW	3 cut(s)	110, 2554, 5364
PctI	GAATGC	4 cut(s)	1705, 2595, 2950, 6111
PdmI	GAANNNNTTC	4 cut(s)	1225, 2769, 3462, 4668
PflFI	GACNNNGTC	2 cut(s)	372, 5251
PflMI	CCANNNNNTGG	1 cut(s)	1270
PfoI	TCCNGGA	2 cut(s)	1594, 4041
PinAI	ACCGGT	1 cut(s)	4497
PmaCI	CACGTG	2 cut(s)	3473, 5377
PmlI	CACGTG	2 cut(s)	3473, 5377
Ppu21I	YACGTR	3 cut(s)	2558, 3473, 5377
PpuMI	RGGWCCY	2 cut(s)	5280, 5927
PscI	ACATGT	1 cut(s)	741
Psp5II	RGGWCCY	2 cut(s)	5280, 5927
PspCI	CACGTG	2 cut(s)	3473, 5377
PspFI	CCCAGC	2 cut(s)	450, 4580
PspOMI	GGGCCC	2 cut(s)	29, 46
PspPPI	RGGWCCY	2 cut(s)	5280, 5927
PsrI	GAACNNNNNNTAC	2 cut(s)	1746, 1778
PstI	CTGCAG	1 cut(s)	2845
PstNI	CAGNNNCTG	3 cut(s)	1465, 2849, 6746
PsyI	GACNNNGTC	2 cut(s)	372, 5251
PvuII	CAGCTG	2 cut(s)	1465, 2846
RruI	TCGCGA	1 cut(s)	2541
RseI	CAYNNNNRTG	6 cut(s)	4910, 5421, 5855, 6395, 6435, 6471
SalI	GTCGAC	1 cut(s)	112
SapI	GCTCTTC	2 cut(s)	1821, 4332
ScaI	AGTACT	1 cut(s)	4086
SexAI	ACCWGGT	1 cut(s)	4222
SfcI	CTRYAG	3 cut(s)	1365, 2841, 4203
SfiI	GGCCNNNNNGGCC	1 cut(s)	54
SfuI	TTCGAA	3 cut(s)	3617, 4810, 5411
SinI	GGWCC	9 cut(s)	2048, 4495, 5280, 5380, 5389, 5584, 5927, 6457, 6620
SmiMI	CAYNNNNRTG	6 cut(s)	4910, 5421, 5855, 6395, 6435, 6471
SmlI	CTYRAG	8 cut(s)	839, 1505, 1530, 1565, 2338, 3046, 3324, 5595
SmoI	CTYRAG	8 cut(s)	839, 1505, 1530, 1565, 2338, 3046, 3324, 5595
SpeI	ACTAGT	1 cut(s)	2699
SseBI	AGGCCT	2 cut(s)	2392, 2456
SspI	AATATT	2 cut(s)	3114, 4537
StuI	AGGCCT	2 cut(s)	2392, 2456
StyI	CCWWGG	5 cut(s)	655, 1193, 1444, 4002, 5699
TaqII	GACCGA	2 cut(s)	3378, 6694
TatI	WGTACW	6 cut(s)	3145, 3915, 4084, 4545, 4817, 6154
TscAI	CASTG	9 cut(s)	906, 981, 1248, 2008, 2016, 2534, 2652, 4145, 4912
TseFI	GTSAC	6 cut(s)	686, 885, 1404, 1945, 3358, 3552
Tsp45I	GTSAC	6 cut(s)	686, 885, 1404, 1945, 3358, 3552
TspGWI	ACGGA	7 cut(s)	635, 2278, 2563, 3049, 3259, 6258, 6535
TspRI	CASTG	9 cut(s)	906, 981, 1248, 2008, 2016, 2534, 2652, 4145, 4912
Tth111I	GACNNNGTC	2 cut(s)	372, 5251
Van91I	CCANNNNNTGG	1 cut(s)	1270
Vha464I	CTTAAG	2 cut(s)	2338, 3046
VneI	GTGCAC	3 cut(s)	3759, 6222, 6366
VpaK11BI	GGWCC	9 cut(s)	2048, 4495, 5280, 5380, 5389, 5584, 5927, 6457, 6620
XagI	CCTNNNNNAGG	2 cut(s)	1599, 5703
XapI	RAATTY	8 cut(s)	613, 2248, 2600, 3711, 5273, 5691, 5974, 6625
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	6 cut(s)	538, 745, 1472, 2996, 5732, 5764
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1409, 5399
XmaJI	CCTAGG	2 cut(s)	1193, 5699
XmiI	GTMKAC	2 cut(s)	113, 6053
XmnI	GAANNNNTTC	4 cut(s)	1225, 2769, 3462, 4668
ZraI	GACGTC	2 cut(s)	72, 2158
ZrmI	AGTACT	1 cut(s)	4086
Zsp2I	ATGCAT	1 cut(s)	1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.