Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037764.1

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2151

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037764.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1564 bp

tccttgtttcaagccattgcaacaacaatttttaagaaagcctgaagggaatgaagctcttctagcatatcaagctgctgctttccaaggagttttgagtgggaacaattttgtttcagctcctggctccactcaaatgcctcaacaacctaggaagttcatggatatggctcaacagcatggctcacaagaggggcagaataggagtcaaggtgttgaccagcaagtgctaaatccagtccatcaagcttatcttcagtatgcttttcaggcttcacagcagaagtctggtttggcaatgcaatctcagcagcaacctaaaatggggatgttggggcctccatcgggaaaggatcaagacatgcggtctgcaaatttgaaaatgcaggaattcaattctatgcaggcagctagccaggcacaagcatcatcatcaaaaaacttgtcatcaaagaactcaacagagcattttgctcgtggagaaaagcagatggaccgaggacagtcaccagcttcggaccaaaggagtgaatctaagccttcagcccagccagcagccgtaggacaatatatgcctggaaatctcatgaggccaatgatggctccacagcaaagcatgcaaaatatgccaaacaaccagatggcactggctgctcagttgcaagcatttgcacttgagcacaatattgatctttcacaacctggaaatgccaacttgatggcacagctgattccaatgttgcagtctaggatggctactcaacaaaaggcgaatgagagcaacatgggtgtacaatcgtcttctgctccagtttcaaagcagcaggttacttctcctcaagttgcaagtgagagttctcctcatgctaattcatcaagtgatgtatctgggcagtcaggctctgcaaaagcaaagcagacagtttcacctagcccttttggctcaggttcaagtagtgggatctttaacaatagtaacaacattcctatgcagcagttttctggtcacggcagagaaaaccagatacctcctaggcagtcagctccttttgtaaatggaatggctcctacccatcccacacacccatctacaaacacaagccaaggtctcgatcaatctctccatgtaaaacatttacctaacaatccagaaacattgcaaatgcaataccctaggcagttaaatcgttcttctccacaagctgtcgttcctaatgatgggggctcgggtaatcacagtgttcagtcacaaggcggaccagctcctcaggtgccacaacaacgccctggattcaccaaacagcagctgcatgttctcaaagcacaaatactagcatttaggcgaatcaaggtacacagaactctgtttcgctcctattatctcattgccttttacgtatctattgggtctacagcttattttatttttatttttatttctttttatgaaagtgtggatggtttaatggagcatgatgcttactctcatttcctattacttgatagaaaggtgaaggtacactccctcaggaacttcttcgggcgattgctccaccacctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

520

Amino Acids

56.94

Weight (kDa)

9.84

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	1271
AccI	GTMKAC	1 cut(s)	1410
AciI	CCGC	2 cut(s)	365, 1255
AclWI	GGATC	2 cut(s)	361, 969
AcsI	RAATTY	2 cut(s)	374, 390
AcuI	CTGAAG	3 cut(s)	64, 240, 526
AfaI	GTAC	3 cut(s)	793, 1354, 1519
AfiI	CCNNNNNNNGG	3 cut(s)	324, 345, 1218
AgsI	TTSAA	5 cut(s)	11, 380, 395, 817, 952
AhdI	GACNNNNNGTC	1 cut(s)	365
AjnI	CCWGG	5 cut(s)	122, 415, 575, 701, 1286
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	1113
AlwI	GGATC	2 cut(s)	361, 969
AlwNI	CAGNNNCTG	3 cut(s)	123, 903, 1307
Ama87I	CYCGRG	1 cut(s)	1226
AoxI	GGCC	2 cut(s)	336, 591
ApoI	RAATTY	2 cut(s)	374, 390
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
Asp700I	GAANNNNTTC	2 cut(s)	58, 1536
AspA2I	CCTAGG	3 cut(s)	150, 1032, 1173
AspS9I	GGNCC	4 cut(s)	336, 494, 518, 1257
AsuHPI	GGTGA	4 cut(s)	499, 919, 1286, 1523
AsuNHI	GCTAGC	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	1226
AvaII	GGWCC	3 cut(s)	494, 518, 1257
AvrII	CCTAGG	3 cut(s)	150, 1032, 1173
AxyI	CCTNAGG	2 cut(s)	1267, 1527
BanI	GGYRCC	1 cut(s)	1271
BanII	GRGCYC	1 cut(s)	1227
BauI	CACGAG	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	793
Bbv12I	GWGCWC	1 cut(s)	682
BceAI	ACGGC	2 cut(s)	543, 1025
BcgI	CGANNNNNNTGC	4 cut(s)	456, 490, 1167, 1201
BciT130I	CCWGG	5 cut(s)	124, 417, 577, 703, 1288
BcoDI	GTCTC	1 cut(s)	1113
BfaI	CTAG	9 cut(s)	63, 151, 412, 748, 931, 1033, 1174, 1332, 1562
BfmI	CTRYAG	1 cut(s)	1411
BfuAI	ACCTGC	1 cut(s)	815
BglI	GCCNNNNNGGC	1 cut(s)	940
BlnI	CCTAGG	3 cut(s)	150, 1032, 1173
Bme1390I	CCNGG	5 cut(s)	124, 417, 577, 703, 1288
Bme18I	GGWCC	3 cut(s)	494, 518, 1257
BmeRI	GACNNNNNGTC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	1226
BmgT120I	GGNCC	4 cut(s)	336, 494, 518, 1257
BmiI	GGNNCC	5 cut(s)	128, 337, 604, 1066, 1273
BmrFI	CCNGG	5 cut(s)	124, 417, 577, 703, 1288
BmsI	GCATC	2 cut(s)	435, 1466
BmtI	GCTAGC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	793
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	1 cut(s)	793
Bpu10I	CCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	696, 823
BsaAI	YACGTR	1 cut(s)	1397
BsaI	GGTCTC	1 cut(s)	1113
BsaJI	CCNNGG	7 cut(s)	86, 150, 497, 1032, 1103, 1173, 1286
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 345, 1218
Bse1I	ACTGG	3 cut(s)	237, 652, 810
Bse21I	CCTNAGG	2 cut(s)	1267, 1527
Bse3DI	GCAATG	4 cut(s)	15, 304, 1155, 1384
BseBI	CCWGG	5 cut(s)	124, 417, 577, 703, 1288
BseDI	CCNNGG	7 cut(s)	86, 150, 497, 1032, 1103, 1173, 1286
BseGI	GGATG	4 cut(s)	334, 757, 1073, 1463
BseLI	CCNNNNNNNGG	3 cut(s)	324, 345, 1218
BseMI	GCAATG	4 cut(s)	15, 304, 1155, 1384
BseMII	CTCAG	5 cut(s)	321, 669, 958, 1281, 1541
BseNI	ACTGG	3 cut(s)	237, 652, 810
BseRI	GAGGAG	3 cut(s)	826, 850, 1255
BseYI	CCCAGC	1 cut(s)	547
BshFI	GGCC	2 cut(s)	338, 593
BshNI	GGYRCC	1 cut(s)	1271
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	1226
BslI	CCNNNNNNNGG	3 cut(s)	324, 345, 1218
BsmAI	GTCTC	1 cut(s)	1113
BsnI	GGCC	2 cut(s)	338, 593
Bso31I	GGTCTC	1 cut(s)	1113
BsoBI	CYCGRG	1 cut(s)	1226
Bsp1286I	GDGCHC	2 cut(s)	682, 1227
Bsp1407I	TGTACA	1 cut(s)	791
Bsp143I	GATC	4 cut(s)	353, 689, 961, 1112
BspACI	CCGC	2 cut(s)	365, 1255
BspANI	GGCC	2 cut(s)	338, 593
BspCNI	CTCAG	5 cut(s)	320, 668, 957, 1280, 1540
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	5 cut(s)	128, 337, 604, 1066, 1273
BspMI	ACCTGC	1 cut(s)	815
BspOI	GCTAGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	361, 969
BspQI	GCTCTTC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	1271
BspTNI	GGTCTC	1 cut(s)	1113
BsrDI	GCAATG	4 cut(s)	15, 304, 1155, 1384
BsrGI	TGTACA	1 cut(s)	791
BsrI	ACTGG	3 cut(s)	237, 652, 810
BssECI	CCNNGG	7 cut(s)	86, 150, 497, 1032, 1103, 1173, 1286
BssMI	GATC	4 cut(s)	353, 689, 961, 1112
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	5 cut(s)	86, 150, 1032, 1103, 1173
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	5 cut(s)	124, 417, 577, 703, 1288
Bst4CI	ACNGT	3 cut(s)	505, 923, 1239
Bst6I	CTCTTC	1 cut(s)	64
BstAPI	GCANNNNNTGC	3 cut(s)	617, 626, 651
BstAUI	TGTACA	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	1397
BstC8I	GCNNGC	5 cut(s)	406, 413, 553, 618, 664
BstDEI	CTNAG	6 cut(s)	307, 535, 655, 944, 1267, 1527
BstF5I	GGATG	4 cut(s)	334, 757, 1073, 1463
BstKTI	GATC	4 cut(s)	356, 692, 964, 1115
BstMAI	GTCTC	1 cut(s)	1113
BstMBI	GATC	4 cut(s)	353, 689, 961, 1112
BstNI	CCWGG	5 cut(s)	124, 417, 577, 703, 1288
BstNSI	RCATGY	3 cut(s)	365, 620, 1314
BstSCI	CCNGG	5 cut(s)	122, 415, 575, 701, 1286
BstSFI	CTRYAG	1 cut(s)	1411
BstSNI	TACGTA	1 cut(s)	1397
BstV2I	GAAGAC	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	961
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	961
Bsu36I	CCTNAGG	2 cut(s)	1267, 1527
BsuRI	GGCC	2 cut(s)	338, 593
BtsCI	GGATG	4 cut(s)	334, 757, 1073, 1463
BtsIMutI	CAGTG	2 cut(s)	645, 1244
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	5 cut(s)	406, 413, 553, 618, 664
CaiI	CAGNNNCTG	3 cut(s)	123, 903, 1307
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	4 cut(s)	336, 494, 518, 1257
Csp6I	GTAC	3 cut(s)	792, 1353, 1518
CviQI	GTAC	3 cut(s)	792, 1353, 1518
DdeI	CTNAG	6 cut(s)	307, 535, 655, 944, 1267, 1527
DpnI	GATC	4 cut(s)	355, 691, 963, 1114
DpnII	GATC	4 cut(s)	353, 689, 961, 1112
DriI	GACNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	1270
Eco105I	TACGTA	1 cut(s)	1397
Eco130I	CCWWGG	5 cut(s)	86, 150, 1032, 1103, 1173
Eco24I	GRGCYC	1 cut(s)	1227
Eco31I	GGTCTC	1 cut(s)	1113
Eco47I	GGWCC	3 cut(s)	494, 518, 1257
Eco57I	CTGAAG	3 cut(s)	64, 240, 526
Eco81I	CCTNAGG	2 cut(s)	1267, 1527
Eco88I	CYCGRG	1 cut(s)	1226
EcoO109I	RGGNCCY	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	5 cut(s)	122, 415, 575, 701, 1286
EcoT14I	CCWWGG	5 cut(s)	86, 150, 1032, 1103, 1173
EcoT38I	GRGCYC	1 cut(s)	1227
ErhI	CCWWGG	5 cut(s)	86, 150, 1032, 1103, 1173
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FblI	GTMKAC	1 cut(s)	1410
FokI	GGATG	4 cut(s)	341, 764, 1060, 1470
FriOI	GRGCYC	1 cut(s)	1227
FspBI	CTAG	9 cut(s)	63, 151, 412, 748, 931, 1033, 1174, 1332, 1562
GsaI	CCCAGC	1 cut(s)	551
GsuI	CTGGAG	1 cut(s)	793
HaeIII	GGCC	2 cut(s)	338, 593
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	5 cut(s)	206, 531, 731, 1291, 1345
HphI	GGTGA	4 cut(s)	499, 919, 1286, 1523
Hpy166II	GTNNAC	5 cut(s)	218, 792, 1355, 1411, 1520
Hpy188I	TCNGA	1 cut(s)	518
Hpy188III	TCNNGA	6 cut(s)	346, 357, 587, 1110, 1149, 1529
Hpy8I	GTNNAC	5 cut(s)	218, 792, 1355, 1411, 1520
HpyAV	CCTTC	3 cut(s)	39, 550, 1508
HpyCH4III	ACNGT	3 cut(s)	505, 923, 1239
HpyCH4IV	ACGT	1 cut(s)	1396
HpyF3I	CTNAG	6 cut(s)	307, 535, 655, 944, 1267, 1527
HpySE526I	ACGT	1 cut(s)	1396
Kzo9I	GATC	4 cut(s)	353, 689, 961, 1112
LguI	GCTCTTC	1 cut(s)	64
LweI	GCATC	2 cut(s)	435, 1466
MaeI	CTAG	9 cut(s)	63, 151, 412, 748, 931, 1033, 1174, 1332, 1562
MaeII	ACGT	1 cut(s)	1396
MaeIII	GTNAC	5 cut(s)	505, 827, 975, 1005, 1246
MalI	GATC	4 cut(s)	355, 691, 963, 1114
MboI	GATC	4 cut(s)	353, 689, 961, 1112
MboII	GAAGA	5 cut(s)	51, 246, 793, 1183, 1529
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	2 cut(s)	682, 1227
MluCI	AATT	6 cut(s)	27, 107, 374, 390, 395, 869
MlyI	GAGTC	1 cut(s)	215
MroXI	GAANNNNTTC	2 cut(s)	58, 1536
MseI	TTAA	4 cut(s)	33, 967, 1182, 1464
MslI	CAYNNNNRTG	3 cut(s)	135, 165, 987
MspA1I	CMGCKG	2 cut(s)	728, 1307
MspR9I	CCNGG	5 cut(s)	124, 417, 577, 703, 1288
MvaI	CCWGG	5 cut(s)	124, 417, 577, 703, 1288
NdeII	GATC	4 cut(s)	353, 689, 961, 1112
NheI	GCTAGC	1 cut(s)	411
NlaIV	GGNNCC	5 cut(s)	128, 337, 604, 1066, 1273
NmuCI	GTSAC	3 cut(s)	505, 1005, 1246
NspI	RCATGY	3 cut(s)	365, 620, 1314
PaeI	GCATGC	1 cut(s)	620
PagI	TCATGA	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	58, 1536
PfeI	GAWTC	4 cut(s)	531, 731, 1291, 1345
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	1397
Psp6I	CCWGG	5 cut(s)	122, 415, 575, 701, 1286
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	5 cut(s)	122, 415, 575, 701, 1286
PspN4I	GGNNCC	5 cut(s)	128, 337, 604, 1066, 1273
PspPI	GGNCC	4 cut(s)	336, 494, 518, 1257
PstNI	CAGNNNCTG	3 cut(s)	123, 903, 1307
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	728, 1307
RsaI	GTAC	3 cut(s)	793, 1354, 1519
RsaNI	GTAC	3 cut(s)	792, 1353, 1518
RseI	CAYNNNNRTG	3 cut(s)	135, 165, 987
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	33, 967, 1182, 1464
Sau3AI	GATC	4 cut(s)	353, 689, 961, 1112
Sau96I	GGNCC	4 cut(s)	336, 494, 518, 1257
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	5 cut(s)	124, 417, 577, 703, 1288
SduI	GDGCHC	2 cut(s)	682, 1227
SfaNI	GCATC	2 cut(s)	435, 1466
SfcI	CTRYAG	1 cut(s)	1411
SinI	GGWCC	3 cut(s)	494, 518, 1257
SmiMI	CAYNNNNRTG	3 cut(s)	135, 165, 987
SmlI	CTYRAG	2 cut(s)	675, 838
SmoI	CTYRAG	2 cut(s)	675, 838
SnaBI	TACGTA	1 cut(s)	1397
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	6 cut(s)	27, 107, 374, 390, 395, 869
SsiI	CCGC	2 cut(s)	365, 1255
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	9 cut(s)	63, 151, 412, 748, 931, 1033, 1174, 1332, 1562
StyD4I	CCNGG	5 cut(s)	122, 415, 575, 701, 1286
StyI	CCWWGG	5 cut(s)	86, 150, 1032, 1103, 1173
TaaI	ACNGT	3 cut(s)	505, 923, 1239
TaiI	ACGT	1 cut(s)	1399
TaqI	TCGA	1 cut(s)	1111
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	6 cut(s)	27, 107, 374, 390, 395, 869
TatI	WGTACW	1 cut(s)	791
TfiI	GAWTC	4 cut(s)	531, 731, 1291, 1345
Tru1I	TTAA	4 cut(s)	33, 967, 1182, 1464
Tru9I	TTAA	4 cut(s)	33, 967, 1182, 1464
TscAI	CASTG	2 cut(s)	652, 1244
TseFI	GTSAC	3 cut(s)	505, 1005, 1246
Tsp45I	GTSAC	3 cut(s)	505, 1005, 1246
TspDTI	ATGAA	4 cut(s)	67, 149, 862, 1462
TspRI	CASTG	2 cut(s)	652, 1244
VpaK11BI	GGWCC	3 cut(s)	494, 518, 1257
XapI	RAATTY	2 cut(s)	374, 390
XceI	RCATGY	3 cut(s)	365, 620, 1314
XmaJI	CCTAGG	3 cut(s)	150, 1032, 1173
XmiI	GTMKAC	1 cut(s)	1410
XmnI	GAANNNNTTC	2 cut(s)	58, 1536
XspI	CTAG	9 cut(s)	63, 151, 412, 748, 931, 1033, 1174, 1332, 1562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.