Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Reverse (-)

19363139 .. 19373891

Gene Structure 10753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6633 bp

ATGCAATCGGGTGGAGGAGGAGGAGGCGGGCCCGGGCGGAACCCGGGAGTGGGGCCGGCGGGACGGGCAACGTCGAATTCGTCGGCTGCTTCGCCGTCCTCGTCGTCGTCGGCGGTGTCGACGCCGCACTTGGGGTTTGATTCGGTGCAGCAGCACCAGCACCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGCAGCAATTGGGGTCCAGACAGCCATTGCAACAACAATTTTTAAGAAAGCCTGAAGGGAATGAAGCTCTTCTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCCGGCTCCACTCAAATGCCTCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGCCCTCCATCAGGAAAGGATCAAGACATGCGGTCGGCAAATTTGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTAGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCACCAGATCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATTCATGCCTGGAAATCTCATGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCATTGGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCAAATGAGAGCAACATGGGTGTACAATCGTCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCGCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAGTAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACAGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCACACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGTTCGGGCAATCACAATGTTCAGTCACAAGGTGGACCAGCTTCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAAGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTCTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCAGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGTCTCTGCCAGAAAGTATCATGGACCACTACCTTCTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCGGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGGTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAAAATGTTAAGGGAGTTTTCAAAGAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCGTCCTTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGAAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCGAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAACAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCGCATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGCGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTACTTTTGACAGGAACACCGTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGACGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGTGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCACGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCCGAGACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGAAATGACCTCATAGTAGAAGAAGCTGGTTCCTCAGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTGGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATTGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAGGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGAACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTAATTAGCAAGCTCCAGAGGAGAATTGATAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTGATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACGAACTGAAGCCAGGAAAGTTCACGATCTTTTCTTTGATATCTTGAAAATTGCCTTTGCTGACACTGACTTTCGAGAAGCCAGAAGTGCGCTCTCTTTTACCAGCCCAGTTGTGACCACCAATGCTCTATCCCCAAGACCAGGTGTTGGACAAAGCAAGAGACACAAATCGATAAATGAGGTGGAACCTGACCCCAGTCCTCTACAGAAGCCACTACGGGGACCTATTATCAGCGGCGAAGAAACAAGGGTAAGAAGCCATATGCCCCAGAAGGAATCAAGACTTGGGAGTGGAAGTGGTAATAGTCGGGAGCACTATCAGCCAGAGGATTCTCCATTGCTTGCTCATCCAGGAGATCTGGTTATTTGCAAGAAGAAGAGAAAAGACAGGGAAAAGACTGGGGTAAAGACTAGGAATGGACCAGCTGGCCCTGTTTCACCCCCTAGCATGGGTCGCAGTATTAGAAGTCCTGGGCCAAATTCAGTCCCAAGGGAGACAAGATCAACCCAACAGGCATCACATTCACAAGGGTGGGCCAACCAGCCTTCGCAGCCTGCTCAGCCCGCAAACAGGGGTACGGGGTCCGTTGGTTGGGCAAATCCGGTAAAGAGGTTAAGGACGGATTCTGGAAAGAGAAGGCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2210

Amino Acids

247.88

Weight (kDa)

8.87

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	499 - 532	5.4e-08	QLQ
ResIII	PF04851	963 - 1123	1.9e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	967 - 1271	3e-84	SNF2-related domain
DEAD	PF00270	984 - 1127	1.7e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1292 - 1405	5.9e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4145
Acc36I	ACCTGC	1 cut(s)	1018
AccB1I	GGYRCC	2 cut(s)	1474, 3689
AccB7I	CCANNNNNTGG	1 cut(s)	6125
AccBSI	CCGCTC	1 cut(s)	5887
AccI	GTMKAC	3 cut(s)	119, 4786, 5530
AcsI	RAATTY	8 cut(s)	76, 577, 593, 1336, 1632, 5536, 5818, 6457
AcvI	CACGTG	1 cut(s)	3317
AcyI	GRCGYC	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	1457
AflII	CTTAAG	1 cut(s)	2890
AflIII	ACRYGT	1 cut(s)	5607
AhdI	GACNNNNNGTC	1 cut(s)	568
AhlI	ACTAGT	2 cut(s)	2543, 4658
AleI	CACNNNNGTG	1 cut(s)	6508
Alw21I	GWGCWC	3 cut(s)	885, 5916, 6294
AlwNI	CAGNNNCTG	6 cut(s)	1106, 1510, 1985, 2693, 2710, 5627
Ama87I	CYCGRG	2 cut(s)	32, 43
ApaI	GGGCCC	2 cut(s)	33, 542
ApoI	RAATTY	8 cut(s)	76, 577, 593, 1336, 1632, 5536, 5818, 6457
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AseI	ATTAAT	1 cut(s)	1731
Asp700I	GAANNNNTTC	4 cut(s)	261, 1584, 2613, 3306
AspA2I	CCTAGG	3 cut(s)	353, 1235, 1376
AspLEI	GCGC	5 cut(s)	3182, 3348, 3605, 5880, 6070
AsuC2I	CCSGG	5 cut(s)	33, 34, 44, 45, 327
AsuHPI	GGTGA	8 cut(s)	654, 702, 1122, 1489, 1571, 5288, 5468, 6408
AsuII	TTCGAA	1 cut(s)	3793
AsuNHI	GCTAGC	2 cut(s)	614, 2281
AvaI	CYCGRG	2 cut(s)	32, 43
AvrII	CCTAGG	3 cut(s)	353, 1235, 1376
AxyI	CCTNAGG	1 cut(s)	5065
BaeGI	GKGCMC	2 cut(s)	33, 542
BamHI	GGATCC	2 cut(s)	3882, 3894
BanI	GGYRCC	2 cut(s)	1474, 3689
BanII	GRGCYC	5 cut(s)	33, 542, 2916, 4204, 5916
BauI	CACGAG	2 cut(s)	678, 5915
BbrPI	CACGTG	1 cut(s)	3317
BbsI	GAAGAC	2 cut(s)	996, 3717
Bbv12I	GWGCWC	3 cut(s)	885, 5916, 6294
BceAI	ACGGC	4 cut(s)	79, 746, 3359, 3550
BcgI	CGANNNNNNTGC	4 cut(s)	1370, 1404, 3783, 3817
BclI	TGATCA	5 cut(s)	2197, 4585, 4633, 5632, 5872
BcnI	CCSGG	5 cut(s)	33, 34, 44, 45, 327
BcuI	ACTAGT	2 cut(s)	2543, 4658
BfmI	CTRYAG	8 cut(s)	1622, 1806, 1878, 2685, 4047, 5619, 5638, 6182
BfoI	RGCGCY	1 cut(s)	3349
BfrI	CTTAAG	1 cut(s)	2890
BfuAI	ACCTGC	1 cut(s)	1018
BglI	GCCNNNNNGGC	2 cut(s)	1143, 2233
BglII	AGATCT	3 cut(s)	2119, 3618, 6334
BlnI	CCTAGG	3 cut(s)	353, 1235, 1376
BlpI	GCTNAGC	1 cut(s)	6537
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	2 cut(s)	32, 43
BmrI	ACTGGG	3 cut(s)	6080, 6168, 6387
BmtI	GCTAGC	2 cut(s)	618, 2285
BmuI	ACTGGG	3 cut(s)	6080, 6168, 6387
BoxI	GACNNNNGTC	1 cut(s)	6174
BpiI	GAAGAC	2 cut(s)	996, 3717
BplI	GAGNNNNNCTC	4 cut(s)	1048, 1080, 4432, 4464
BpmI	CTGGAG	8 cut(s)	996, 1662, 2769, 4112, 4857, 4935, 5238, 5732
Bpu10I	CCTNAGC	4 cut(s)	1147, 2594, 3575, 3722
Bpu1102I	GCTNAGC	1 cut(s)	6537
Bpu14I	TTCGAA	1 cut(s)	3793
BpuEI	CTTGAG	6 cut(s)	899, 1026, 1560, 3153, 3533, 5424
BpuMI	CCSGG	5 cut(s)	33, 34, 44, 45, 327
Bsa29I	ATCGAT	2 cut(s)	4342, 6149
BsaAI	YACGTR	1 cut(s)	3317
BsaBI	GATNNNNATC	2 cut(s)	3330, 4161
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	2 cut(s)	1316, 2084
BsaWI	WCCGGW	2 cut(s)	3490, 6580
Bse118I	RCCGGY	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	5065
Bse3DI	GCAATG	6 cut(s)	218, 507, 1358, 2229, 4529, 6314
Bse8I	GATNNNNATC	2 cut(s)	3330, 4161
BseCI	ATCGAT	2 cut(s)	4342, 6149
BseJI	GATNNNNATC	2 cut(s)	3330, 4161
BseMI	GCAATG	6 cut(s)	218, 507, 1358, 2229, 4529, 6314
BseRI	GAGGAG	6 cut(s)	30, 33, 36, 1029, 4631, 5767
BseSI	GKGCMC	2 cut(s)	33, 542
BseYI	CCCAGC	3 cut(s)	750, 1965, 4424
BsgI	GTGCAG	5 cut(s)	167, 2315, 2382, 2679, 4125
Bsh1285I	CGRYCG	1 cut(s)	572
BshNI	GGYRCC	2 cut(s)	1474, 3689
BshVI	ATCGAT	2 cut(s)	4342, 6149
BsiEI	CGRYCG	1 cut(s)	572
BsiHKAI	GWGCWC	3 cut(s)	885, 5916, 6294
BsiHKCI	CYCGRG	2 cut(s)	32, 43
BsiSI	CCGG	6 cut(s)	33, 44, 56, 327, 3491, 6581
BslFI	GGGAC	3 cut(s)	75, 6213, 6449
BsmFI	GGGAC	3 cut(s)	75, 6213, 6449
BsmI	GAATGC	3 cut(s)	1749, 2683, 2794
Bso31I	GGTCTC	2 cut(s)	1316, 2084
BsoBI	CYCGRG	2 cut(s)	32, 43
Bsp119I	TTCGAA	1 cut(s)	3793
Bsp120I	GGGCCC	2 cut(s)	29, 538
Bsp1286I	GDGCHC	7 cut(s)	33, 542, 885, 2916, 4204, 5916, 6294
Bsp1407I	TGTACA	3 cut(s)	994, 2989, 3999
Bsp1720I	GCTNAGC	1 cut(s)	6537
BspDI	ATCGAT	2 cut(s)	4342, 6149
BspHI	TCATGA	5 cut(s)	789, 2425, 3448, 4450, 5260
BspMAI	CTGCAG	2 cut(s)	2689, 5623
BspMI	ACCTGC	1 cut(s)	1018
BspOI	GCTAGC	2 cut(s)	618, 2285
BspQI	GCTCTTC	2 cut(s)	267, 4449
BspT104I	TTCGAA	1 cut(s)	3793
BspT107I	GGYRCC	2 cut(s)	1474, 3689
BspTI	CTTAAG	1 cut(s)	2890
BspTNI	GGTCTC	2 cut(s)	1316, 2084
BsrBI	CCGCTC	1 cut(s)	5887
BsrDI	GCAATG	6 cut(s)	218, 507, 1358, 2229, 4529, 6314
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	3 cut(s)	994, 2989, 3999
BssAI	RCCGGY	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	2 cut(s)	678, 5915
BssT1I	CCWWGG	9 cut(s)	289, 353, 1235, 1306, 1376, 3753, 4791, 5145, 6467
Bst2BI	CACGAG	2 cut(s)	678, 5915
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	2890
BstAUI	TGTACA	3 cut(s)	994, 2989, 3999
BstBAI	YACGTR	1 cut(s)	3317
BstBI	TTCGAA	1 cut(s)	3793
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstH2I	RGCGCY	1 cut(s)	3349
BstHHI	GCGC	5 cut(s)	3182, 3348, 3605, 5880, 6070
BstMCI	CGRYCG	1 cut(s)	572
BstNSI	RCATGY	6 cut(s)	568, 823, 1517, 1691, 2840, 5611
BstPAI	GACNNNNGTC	1 cut(s)	6174
BstSFI	CTRYAG	8 cut(s)	1622, 1806, 1878, 2685, 4047, 5619, 5638, 6182
BstSLI	GKGCMC	2 cut(s)	33, 542
BstV2I	GAAGAC	2 cut(s)	996, 3717
BstX2I	RGATCY	8 cut(s)	1164, 2119, 3618, 3863, 3882, 3894, 5162, 6334
BstXI	CCANNNNNNTGG	2 cut(s)	922, 4211
BstYI	RGATCY	8 cut(s)	1164, 2119, 3618, 3863, 3882, 3894, 5162, 6334
Bsu15I	ATCGAT	2 cut(s)	4342, 6149
Bsu36I	CCTNAGG	1 cut(s)	5065
BsuTUI	ATCGAT	2 cut(s)	4342, 6149
BtsI	GCAGTG	1 cut(s)	3989
BtsIMutI	CAGTG	5 cut(s)	2371, 3989, 4305, 5494, 6042
BveI	ACCTGC	1 cut(s)	1018
CaiI	CAGNNNCTG	6 cut(s)	1106, 1510, 1985, 2693, 2710, 5627
CciI	TCATGA	5 cut(s)	789, 2425, 3448, 4450, 5260
CfoI	GCGC	5 cut(s)	3182, 3348, 3605, 5880, 6070
Cfr10I	RCCGGY	1 cut(s)	55
Cfr9I	CCCGGG	2 cut(s)	32, 43
ClaI	ATCGAT	2 cut(s)	4342, 6149
CseI	GACGC	2 cut(s)	130, 2255
CsiI	ACCWGGT	1 cut(s)	6118
DraI	TTTAAA	1 cut(s)	3405
DraIII	CACNNNGTG	1 cut(s)	1457
DrdI	GACNNNNNNGTC	1 cut(s)	4145
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	4145
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	5914
Eco130I	CCWWGG	9 cut(s)	289, 353, 1235, 1306, 1376, 3753, 4791, 5145, 6467
Eco147I	AGGCCT	3 cut(s)	2236, 2300, 5356
Eco24I	GRGCYC	5 cut(s)	33, 542, 2916, 4204, 5916
Eco31I	GGTCTC	2 cut(s)	1316, 2084
Eco32I	GATATC	3 cut(s)	3332, 4877, 6019
Eco53kI	GAGCTC	1 cut(s)	5914
Eco72I	CACGTG	1 cut(s)	3317
Eco81I	CCTNAGG	1 cut(s)	5065
Eco88I	CYCGRG	2 cut(s)	32, 43
EcoICRI	GAGCTC	1 cut(s)	5914
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoO109I	RGGNCCY	3 cut(s)	539, 5771, 6200
EcoRI	GAATTC	2 cut(s)	76, 593
EcoRV	GATATC	3 cut(s)	3332, 4877, 6019
EcoT14I	CCWWGG	9 cut(s)	289, 353, 1235, 1306, 1376, 3753, 4791, 5145, 6467
EcoT22I	ATGCAT	1 cut(s)	4887
EcoT38I	GRGCYC	5 cut(s)	33, 542, 2916, 4204, 5916
ErhI	CCWWGG	9 cut(s)	289, 353, 1235, 1306, 1376, 3753, 4791, 5145, 6467
FalI	AAGNNNNNCTT	8 cut(s)	441, 473, 1569, 1601, 3591, 3623, 5665, 5697
FaqI	GGGAC	3 cut(s)	75, 6213, 6449
FauI	CCCGC	5 cut(s)	20, 52, 1951, 3576, 6550
FauNDI	CATATG	2 cut(s)	5476, 6240
FbaI	TGATCA	5 cut(s)	2197, 4585, 4633, 5632, 5872
FblI	GTMKAC	3 cut(s)	119, 4786, 5530
FriOI	GRGCYC	5 cut(s)	33, 542, 2916, 4204, 5916
GlaI	GCGC	5 cut(s)	3181, 3347, 3604, 5879, 6069
GsaI	CCCAGC	3 cut(s)	754, 1969, 4428
GsuI	CTGGAG	8 cut(s)	996, 1662, 2769, 4112, 4857, 4935, 5238, 5732
HaeII	RGCGCY	1 cut(s)	3349
HapII	CCGG	6 cut(s)	33, 44, 56, 327, 3491, 6581
HgaI	GACGC	2 cut(s)	130, 2255
HhaI	GCGC	5 cut(s)	3182, 3348, 3605, 5880, 6070
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	5 cut(s)	3180, 3346, 3603, 5878, 6068
HinP1I	GCGC	5 cut(s)	3180, 3346, 3603, 5878, 6068
HincII	GTYRAC	6 cut(s)	120, 421, 2815, 4258, 4787, 5531
HindII	GTYRAC	6 cut(s)	120, 421, 2815, 4258, 4787, 5531
HindIII	AAGCTT	2 cut(s)	450, 2621
HpaII	CCGG	6 cut(s)	33, 44, 56, 327, 3491, 6581
HphI	GGTGA	8 cut(s)	654, 702, 1122, 1489, 1571, 5288, 5468, 6408
Hpy99I	CGWCG	8 cut(s)	76, 85, 106, 109, 112, 124, 4464, 5535
HpyCH4IV	ACGT	3 cut(s)	71, 1840, 3316
HpySE526I	ACGT	3 cut(s)	71, 1840, 3316
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	5 cut(s)	3180, 3346, 3603, 5878, 6068
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	5 cut(s)	2197, 4585, 4633, 5632, 5872
LguI	GCTCTTC	2 cut(s)	267, 4449
MabI	ACCWGGT	1 cut(s)	6118
MaeII	ACGT	3 cut(s)	71, 1840, 3316
MbiI	CCGCTC	1 cut(s)	5887
MfeI	CAATTG	2 cut(s)	200, 4356
MflI	RGATCY	8 cut(s)	1164, 2119, 3618, 3863, 3882, 3894, 5162, 6334
MhlI	GDGCHC	7 cut(s)	33, 542, 885, 2916, 4204, 5916, 6294
MlyI	GAGTC	5 cut(s)	418, 1706, 3540, 4462, 4754
MmeI	TCCRAC	6 cut(s)	2182, 5011, 5066, 5234, 5416, 6106
Mph1103I	ATGCAT	1 cut(s)	4887
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	4 cut(s)	261, 1584, 2613, 3306
MslI	CAYNNNNRTG	7 cut(s)	338, 368, 1190, 4241, 4491, 5265, 6508
MspA1I	CMGCKG	8 cut(s)	931, 1510, 2642, 2690, 2738, 4109, 6213, 6404
MspCI	CTTAAG	1 cut(s)	2890
MspI	CCGG	6 cut(s)	33, 44, 56, 327, 3491, 6581
MunI	CAATTG	2 cut(s)	200, 4356
Mva1269I	GAATGC	3 cut(s)	1749, 2683, 2794
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	5 cut(s)	33, 34, 44, 45, 327
NdeI	CATATG	2 cut(s)	5476, 6240
NgoMIV	GCCGGC	1 cut(s)	55
NheI	GCTAGC	2 cut(s)	614, 2281
NmuCI	GTSAC	7 cut(s)	708, 1208, 1449, 3202, 3396, 5267, 6091
NsiI	ATGCAT	1 cut(s)	4887
NspI	RCATGY	6 cut(s)	568, 823, 1517, 1691, 2840, 5611
NspV	TTCGAA	1 cut(s)	3793
OliI	CACNNNNGTG	1 cut(s)	6508
PaeI	GCATGC	1 cut(s)	823
PagI	TCATGA	5 cut(s)	789, 2425, 3448, 4450, 5260
PceI	AGGCCT	3 cut(s)	2236, 2300, 5356
PciI	ACATGT	1 cut(s)	5607
PciSI	GCTCTTC	2 cut(s)	267, 4449
PcsI	WCGNNNNNNNCGW	4 cut(s)	77, 98, 116, 2389
PctI	GAATGC	3 cut(s)	1749, 2683, 2794
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	4 cut(s)	261, 1584, 2613, 3306
PflMI	CCANNNNNTGG	1 cut(s)	6125
PfoI	TCCNGGA	3 cut(s)	1639, 3885, 6328
PleI	GAGTC	5 cut(s)	417, 1705, 3540, 4462, 4753
PmaCI	CACGTG	1 cut(s)	3317
PmlI	CACGTG	1 cut(s)	3317
PpsI	GAGTC	5 cut(s)	417, 1705, 3540, 4462, 4753
Ppu21I	YACGTR	1 cut(s)	3317
PpuMI	RGGWCCY	2 cut(s)	5771, 6200
PscI	ACATGT	1 cut(s)	5607
PshAI	GACNNNNGTC	1 cut(s)	6174
PshBI	ATTAAT	1 cut(s)	1731
Psp124BI	GAGCTC	1 cut(s)	5916
Psp5II	RGGWCCY	2 cut(s)	5771, 6200
PspCI	CACGTG	1 cut(s)	3317
PspFI	CCCAGC	3 cut(s)	750, 1965, 4424
PspOMI	GGGCCC	2 cut(s)	29, 538
PspPPI	RGGWCCY	2 cut(s)	5771, 6200
PstI	CTGCAG	2 cut(s)	2689, 5623
PstNI	CAGNNNCTG	6 cut(s)	1106, 1510, 1985, 2693, 2710, 5627
PsuI	RGATCY	8 cut(s)	1164, 2119, 3618, 3863, 3882, 3894, 5162, 6334
PvuII	CAGCTG	7 cut(s)	931, 1510, 2642, 2690, 2738, 4109, 6404
RseI	CAYNNNNRTG	7 cut(s)	338, 368, 1190, 4241, 4491, 5265, 6508
SacI	GAGCTC	1 cut(s)	5916
SalI	GTCGAC	3 cut(s)	118, 4785, 5529
SapI	GCTCTTC	2 cut(s)	267, 4449
SchI	GAGTC	5 cut(s)	418, 1706, 3540, 4462, 4754
SduI	GDGCHC	7 cut(s)	33, 542, 885, 2916, 4204, 5916, 6294
SexAI	ACCWGGT	1 cut(s)	6118
SfcI	CTRYAG	8 cut(s)	1622, 1806, 1878, 2685, 4047, 5619, 5638, 6182
SfuI	TTCGAA	1 cut(s)	3793
SmaI	CCCGGG	2 cut(s)	34, 45
SmiMI	CAYNNNNRTG	7 cut(s)	338, 368, 1190, 4241, 4491, 5265, 6508
SmlI	CTYRAG	7 cut(s)	878, 1041, 1575, 2890, 3168, 3512, 5439
SmoI	CTYRAG	7 cut(s)	878, 1041, 1575, 2890, 3168, 3512, 5439
SpeI	ACTAGT	2 cut(s)	2543, 4658
SphI	GCATGC	1 cut(s)	823
SrfI	GCCCGGGC	1 cut(s)	34
SseBI	AGGCCT	3 cut(s)	2236, 2300, 5356
SspI	AATATT	8 cut(s)	889, 1651, 2958, 3558, 4381, 4735, 4844, 5957
SstI	GAGCTC	1 cut(s)	5916
StuI	AGGCCT	3 cut(s)	2236, 2300, 5356
StyI	CCWWGG	9 cut(s)	289, 353, 1235, 1306, 1376, 3753, 4791, 5145, 6467
TaiI	ACGT	3 cut(s)	74, 1843, 3319
TaqII	GACCGA	1 cut(s)	714
TatI	WGTACW	4 cut(s)	994, 2989, 3999, 4661
TauI	GCSGC	4 cut(s)	127, 2134, 3583, 6216
TscAI	CASTG	5 cut(s)	2378, 3989, 4312, 5494, 6049
TseFI	GTSAC	7 cut(s)	708, 1208, 1449, 3202, 3396, 5267, 6091
Tsp45I	GTSAC	7 cut(s)	708, 1208, 1449, 3202, 3396, 5267, 6091
TspGWI	ACGGA	5 cut(s)	2800, 2893, 3295, 6553, 6614
TspMI	CCCGGG	2 cut(s)	32, 43
TspRI	CASTG	5 cut(s)	2378, 3989, 4312, 5494, 6049
Van91I	CCANNNNNTGG	1 cut(s)	6125
Vha464I	CTTAAG	1 cut(s)	2890
VspI	ATTAAT	1 cut(s)	1731
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	8 cut(s)	76, 577, 593, 1336, 1632, 5536, 5818, 6457
XbaI	TCTAGA	1 cut(s)	1609
XceI	RCATGY	6 cut(s)	568, 823, 1517, 1691, 2840, 5611
XmaI	CCCGGG	2 cut(s)	32, 43
XmaJI	CCTAGG	3 cut(s)	353, 1235, 1376
XmiI	GTMKAC	3 cut(s)	119, 4786, 5530
XmnI	GAANNNNTTC	4 cut(s)	261, 1584, 2613, 3306
Zsp2I	ATGCAT	1 cut(s)	4887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.