Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

10396735 .. 10399075

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATCAACATCAGCAGGAGATAATGGCAATGCCTGATAGGCCTTATCGGAAGTTTGTTCGGCTTTGCGAACGTCAGCGGATGGAGCTGTCTAGGCAAGTGCAGGTCTCCCAGAAAGCCATGAGAGAGAAGCAACTGAAATCAATTTTCCAGTGGCGTAAGAAGCTTCTAGAAGCTCACTGGGCCATTCGTGATGCACGGACTGCACGTAACAGGGGAGTTGCCAAATATCATGAGAGGATGCTGAGGGAGTTTTCGAAAAGAAAGGATGATGATAGGAATAGAAGGATGGAAGCACTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTGGAACAGCAGACTAGTATGCCAGGGGATGCAGCAGAGAGATATGCTGTTTTATCATCTTTCTTGAGTCAGACTGAGGAATATCTTCATAAGCTTGGAAGTAAAATAACAGCAGCTAAGAGTCAGCAAGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGTTTACAGGGTCTCTCAGAGGAAGAAGTTAGGGCAGCAGCGGCTTGTGCTGGAGAGGAAGTAATGATTAGAAATCGATTTATTGAAATGAATGCACCTAGAGACAGTTCATCTGTTAACAAGTATTATAGTCTTGCACATGCTGTGAACGAGAGGGTCATAAGGCAACCCTCAATGTTACGGACTGGAAACTTAAGAGATTATCAACTTGTTGGGTTGCAATGGATGCTTTCTCTGTATAACAACAAATTAAATGGAATATTAGCAGATGAAATGGGTCTTGGGAAAACAGTGCAGGTAATGGCATTGATTGCATATTTAATGGAGTTCAAAGGGAACTATGGGCCGCATCTCATAATTGTTCCAAATGCTGTCTTGGTAAATTGGAAGAGTGAGTTACATACTTGGCTTCCATCCGTGTCTTGCATTTATTATGTTGGTGGGAAAGATCAACGGGCAAAATTGTTTTCCCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTCGTGACAACTTATGAGTTCATCATGTATGATCGGTCCAAACTCTCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAAAGGATGAAAGACAGGGAATCAGTTCTAGCACGTCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

378

Amino Acids

43.9

Weight (kDa)

9.5

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	94, 790
AciI	CCGC	3 cut(s)	79, 545, 851
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	317, 590, 835, 994
AhlI	ACTAGT	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	1124
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	768, 800
AluBI	AGCT	6 cut(s)	88, 166, 176, 430, 452, 497
AluI	AGCT	6 cut(s)	88, 166, 176, 430, 452, 497
Alw26I	GTCTC	3 cut(s)	112, 521, 600
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	3 cut(s)	41, 183, 848
Asp700I	GAANNNNTTC	2 cut(s)	420, 1113
AspS9I	GGNCC	3 cut(s)	183, 848, 1041
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	1041
BauI	CACGAG	1 cut(s)	1007
BbvCI	CCTCAGC	1 cut(s)	245
BccI	CCATC	3 cut(s)	76, 283, 925
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	3 cut(s)	112, 521, 600
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	5 cut(s)	93, 170, 351, 603, 1118
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	697
BfuAI	ACCTGC	2 cut(s)	94, 790
BglI	GCCNNNNNGGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	1041
BmgBI	CACGTC	1 cut(s)	1124
BmgT120I	GGNCC	3 cut(s)	183, 848, 1041
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	5 cut(s)	184, 231, 355, 720, 862
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	112, 521
BsaJI	CCNNGG	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bse1I	ACTGG	3 cut(s)	151, 185, 694
Bse3DI	GCAATG	2 cut(s)	36, 731
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	8 cut(s)	87, 246, 274, 294, 370, 735, 917, 1101
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	2 cut(s)	36, 731
BseMII	CTCAG	3 cut(s)	236, 402, 534
BseNI	ACTGG	3 cut(s)	151, 185, 694
BsgI	GTGCAG	4 cut(s)	122, 189, 486, 818
BshFI	GGCC	3 cut(s)	43, 185, 850
BshVI	ATCGAT	1 cut(s)	580
BsmAI	GTCTC	3 cut(s)	112, 521, 600
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	3 cut(s)	43, 185, 850
Bso31I	GGTCTC	2 cut(s)	112, 521
Bsp119I	TTCGAA	1 cut(s)	257
Bsp143I	GATC	4 cut(s)	4, 952, 1036, 1127
BspACI	CCGC	3 cut(s)	79, 545, 851
BspANI	GGCC	3 cut(s)	43, 185, 850
BspCNI	CTCAG	3 cut(s)	237, 403, 533
BspDI	ATCGAT	1 cut(s)	580
BspHI	TCATGA	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	2 cut(s)	94, 790
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	697
BspTNI	GGTCTC	2 cut(s)	112, 521
BsrDI	GCAATG	2 cut(s)	36, 731
BsrI	ACTGG	3 cut(s)	151, 185, 694
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	4 cut(s)	4, 952, 1036, 1127
BssSI	CACGAG	1 cut(s)	1007
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	611, 796
Bst6I	CTCTTC	2 cut(s)	468, 887
BstAFI	CTTAAG	1 cut(s)	697
BstAPI	GCANNNNNTGC	6 cut(s)	203, 485, 488, 500, 730, 815
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	4 cut(s)	245, 411, 453, 520
BstF5I	GGATG	8 cut(s)	87, 246, 274, 294, 370, 735, 917, 1101
BstKTI	GATC	4 cut(s)	7, 955, 1039, 1130
BstMAI	GTCTC	3 cut(s)	112, 521, 600
BstMBI	GATC	4 cut(s)	4, 952, 1036, 1127
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	580
BsuRI	GGCC	3 cut(s)	43, 185, 850
BsuTUI	ATCGAT	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	1124
BtsCI	GGATG	8 cut(s)	87, 246, 274, 294, 370, 735, 917, 1101
BtsIMutI	CAGTG	4 cut(s)	158, 178, 296, 801
BveI	ACCTGC	2 cut(s)	94, 790
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	183, 848, 1041
ClaI	ATCGAT	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	121, 233, 644, 1030
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	245, 411, 453, 520
DpnI	GATC	4 cut(s)	6, 954, 1038, 1129
DpnII	GATC	4 cut(s)	4, 952, 1036, 1127
Eam1104I	CTCTTC	2 cut(s)	468, 887
EarI	CTCTTC	2 cut(s)	468, 887
Eco147I	AGGCCT	1 cut(s)	43
Eco31I	GGTCTC	2 cut(s)	112, 521
Eco47I	GGWCC	1 cut(s)	1041
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	124, 236, 647, 1033
FatI	CATG	4 cut(s)	120, 232, 643, 1029
FokI	GGATG	8 cut(s)	94, 253, 281, 301, 377, 742, 904, 1108
FspBI	CTAG	5 cut(s)	93, 170, 351, 603, 1118
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	43, 185, 850
Hin1II	CATG	4 cut(s)	124, 236, 647, 1033
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	2 cut(s)	164, 428
HinfI	GANTC	3 cut(s)	403, 457, 1109
HpaI	GTTAAC	1 cut(s)	622
Hpy166II	GTNNAC	3 cut(s)	509, 622, 652
Hpy188I	TCNGA	3 cut(s)	51, 408, 523
Hpy188III	TCNNGA	6 cut(s)	170, 191, 233, 400, 1009, 1131
Hpy8I	GTNNAC	3 cut(s)	509, 622, 652
Hpy99I	CGWCG	1 cut(s)	1128
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	2 cut(s)	611, 796
HpyCH4IV	ACGT	4 cut(s)	73, 208, 505, 1123
HpyF3I	CTNAG	4 cut(s)	245, 411, 453, 520
HpySE526I	ACGT	4 cut(s)	73, 208, 505, 1123
Hsp92II	CATG	4 cut(s)	124, 236, 647, 1033
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	4, 952, 1036, 1127
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	5 cut(s)	184, 231, 355, 720, 862
MaeI	CTAG	5 cut(s)	93, 170, 351, 603, 1118
MaeII	ACGT	4 cut(s)	73, 208, 505, 1123
MaeIII	GTNAC	4 cut(s)	209, 681, 900, 1009
MalI	GATC	4 cut(s)	6, 954, 1038, 1129
MboI	GATC	4 cut(s)	4, 952, 1036, 1127
MboII	GAAGA	5 cut(s)	313, 413, 485, 539, 904
MluCI	AATT	7 cut(s)	144, 752, 861, 886, 965, 1056, 1077
MlyI	GAGTC	2 cut(s)	412, 466
MroXI	GAANNNNTTC	2 cut(s)	420, 1113
MseI	TTAA	5 cut(s)	621, 698, 755, 824, 999
MspA1I	CMGCKG	3 cut(s)	79, 497, 545
MspCI	CTTAAG	1 cut(s)	697
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	360
NdeII	GATC	4 cut(s)	4, 952, 1036, 1127
NlaIII	CATG	4 cut(s)	124, 236, 647, 1033
NmuCI	GTSAC	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PctI	GAATGC	1 cut(s)	601
PdmI	GAANNNNTTC	2 cut(s)	420, 1113
PfeI	GAWTC	1 cut(s)	1109
PleI	GAGTC	2 cut(s)	411, 465
PpsI	GAGTC	2 cut(s)	411, 465
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	3 cut(s)	183, 848, 1041
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	621, 698, 755, 824, 999
Sau3AI	GATC	4 cut(s)	4, 952, 1036, 1127
Sau96I	GGNCC	3 cut(s)	183, 848, 1041
SchI	GAGTC	2 cut(s)	412, 466
ScrFI	CCNGG	1 cut(s)	360
SfaNI	GCATC	5 cut(s)	184, 231, 355, 720, 862
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	1 cut(s)	1041
SmlI	CTYRAG	2 cut(s)	400, 697
SmoI	CTYRAG	2 cut(s)	400, 697
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	7 cut(s)	144, 752, 861, 886, 965, 1056, 1077
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	79, 545, 851
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	5 cut(s)	93, 170, 351, 603, 1118
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	611, 796
TaiI	ACGT	4 cut(s)	76, 211, 508, 1126
TaqI	TCGA	3 cut(s)	257, 580, 1126
TaqII	GACCGA	1 cut(s)	1029
TasI	AATT	7 cut(s)	144, 752, 861, 886, 965, 1056, 1077
TauI	GCSGC	2 cut(s)	548, 853
TfiI	GAWTC	1 cut(s)	1109
Tru1I	TTAA	5 cut(s)	621, 698, 755, 824, 999
Tru9I	TTAA	5 cut(s)	621, 698, 755, 824, 999
TscAI	CASTG	4 cut(s)	158, 185, 303, 801
TseFI	GTSAC	1 cut(s)	1009
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	7 cut(s)	413, 603, 608, 789, 1015, 1098, 1112
TspGWI	ACGGA	3 cut(s)	214, 700, 910
TspRI	CASTG	4 cut(s)	158, 185, 303, 801
Vha464I	CTTAAG	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	1041
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	2 cut(s)	420, 1113
XspI	CTAG	5 cut(s)	93, 170, 351, 603, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.