Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

35477142 .. 35486433

Gene Structure 9292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6666 bp

ATGCCACCTGTAACTTTGCATGAGCCTGTGGATTTTGTGGTTATGTTAGTTCCCGTTGGTCTGCCATTGCAACAACAATTTTTAAGAAAGCCTGAAGGGAATGAAGCTCTTCTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCCGGCTCCACTCAAATGCCCCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCGGCAAATATGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTAGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAACAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATTCATGCCTGGAAATCTCTTGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCATTGGCTGCTCAGTTGCAAGCATTTGCAGTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGATGGGTGTACAATCGTCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAATAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGTTCGGGCAATCACAATGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAAGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCAGTCACAGGCTGTGGCATCAGTGAATGGACTGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAAGCAACTGTATCAACAGTTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCGGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAGTAATAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCAGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGTAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGACGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAAAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCGTCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAGCAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAAGGGAACTATGGACCACATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCCTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCGCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGAGGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATCCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATAAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCGGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCGAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAAACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCTATGCATGAAGAGGAAGGAGAAGGAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCGGAAAGAGTTGGAAATGACCTCATAGTAGAAGAAGCTGGTTCCTCAGGTTCGTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAAAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCGTCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGATAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCCTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAATATAGTGGAGTGATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACGAACTGAAGCCAGGAAAGTACACGATCTTTTCTTTGATATCTTGAAAATTGCCTTTGCTGACACTGACTTTCGAGAAGCCAGAAGTGCACTCTCTTTTACCAGCCCAGTTGTGACCACCAATGCTCTATCCCCAAGACCAGGTGTTGGACAAAGCAAGAGACACAAATTGATAAATGAGGTGGAACCTGACCCCAGTCCTCAACAGAAGCCACTACGGGGACCTATTATCAGTAGCGAAGAAACAAGGGTAAGAAGCCATATGCCCCAGAAGGAATCAAGACTTGGGAGTGGAAGTGGTAATAGTCGGGAGCACTATCAGCCAGAGGATTCTCCATTGCTTGCTCATCCAGGAGATCTGGTTATTTGCAAGAAGAAGAGAAAAGACAGGGAAAAGACTGGGGTAAAGACTAGGAATGGACCAGCTGGCCCTGTTTCACCCCCTAGCATGGGTCGCAGTATTAGAAGTCCTGGGCCAAATTCAGTCCCAAGGGAGACAAGATCAACCCAACAGGCATCACATTCACAAGGGTGGGCCAACCAGCCTTCGCAGCCTGCTCAGCCTGCAAACAGGGGTACGGGGTCTGTTGGTTGGGCAAATCCGGTAAAGAGGTTGAGGACGGATTCTGGAAAGAGAAGGCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2221

Amino Acids

249.56

Weight (kDa)

8.62

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	446 - 479	5.4e-08	QLQ
ResIII	PF04851	974 - 1134	2.7e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	978 - 1282	5.2e-84	SNF2-related domain
DEAD	PF00270	995 - 1138	2.2e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1303 - 1416	6e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4178
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	2 cut(s)	1315, 3722
AccB7I	CCANNNNNTGG	1 cut(s)	6158
AccBSI	CCGCTC	1 cut(s)	5920
AccI	GTMKAC	2 cut(s)	4819, 5563
AccII	CGCG	1 cut(s)	3267
AcsI	RAATTY	6 cut(s)	440, 1177, 1473, 5569, 5851, 6490
AcvI	CACGTG	1 cut(s)	3350
AdeI	CACNNNGTG	1 cut(s)	1298
AflII	CTTAAG	1 cut(s)	2923
AflIII	ACRYGT	1 cut(s)	5640
AhdI	GACNNNNNGTC	1 cut(s)	415
AhlI	ACTAGT	2 cut(s)	2576, 4691
AleI	CACNNNNGTG	1 cut(s)	6541
Alw21I	GWGCWC	4 cut(s)	732, 5949, 6103, 6327
Alw26I	GTCTC	8 cut(s)	1157, 2117, 2922, 3154, 3542, 5405, 6166, 6500
Alw44I	GTGCAC	1 cut(s)	6099
AlwNI	CAGNNNCTG	6 cut(s)	947, 1351, 1901, 2726, 2743, 5660
ApaLI	GTGCAC	1 cut(s)	6099
ApoI	RAATTY	6 cut(s)	440, 1177, 1473, 5569, 5851, 6490
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 511, 2033, 2065
Asp700I	GAANNNNTTC	4 cut(s)	108, 1425, 2646, 3339
AspA2I	CCTAGG	3 cut(s)	200, 1076, 1217
AspLEI	GCGC	4 cut(s)	3269, 3381, 3638, 5913
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	7 cut(s)	549, 963, 1330, 1412, 5321, 5501, 6441
AsuII	TTCGAA	1 cut(s)	3826
AsuNHI	GCTAGC	2 cut(s)	461, 2314
AvrII	CCTAGG	3 cut(s)	200, 1076, 1217
AxyI	CCTNAGG	2 cut(s)	1311, 5098
BaeGI	GKGCMC	1 cut(s)	6103
BamHI	GGATCC	2 cut(s)	3915, 3927
BanI	GGYRCC	2 cut(s)	1315, 3722
BanII	GRGCYC	3 cut(s)	2949, 4237, 5949
BauI	CACGAG	2 cut(s)	525, 5948
BbrPI	CACGTG	1 cut(s)	3350
BbsI	GAAGAC	2 cut(s)	837, 3750
Bbv12I	GWGCWC	4 cut(s)	732, 5949, 6103, 6327
BceAI	ACGGC	4 cut(s)	593, 1069, 3392, 3583
BcgI	CGANNNNNNTGC	6 cut(s)	506, 540, 1211, 1245, 3816, 3850
BclI	TGATCA	5 cut(s)	2230, 4618, 4666, 5665, 5905
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	8 cut(s)	1157, 2117, 2922, 3154, 3542, 5405, 6166, 6500
BcuI	ACTAGT	2 cut(s)	2576, 4691
BfmI	CTRYAG	7 cut(s)	1463, 1722, 1794, 2718, 4080, 5652, 5671
BfoI	RGCGCY	1 cut(s)	3382
BfrI	CTTAAG	1 cut(s)	2923
BfuAI	ACCTGC	1 cut(s)	859
BglI	GCCNNNNNGGC	2 cut(s)	984, 2266
BglII	AGATCT	3 cut(s)	2152, 3651, 6367
BlnI	CCTAGG	3 cut(s)	200, 1076, 1217
BlpI	GCTNAGC	1 cut(s)	6570
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmrI	ACTGGG	3 cut(s)	6113, 6201, 6420
BmtI	GCTAGC	2 cut(s)	465, 2318
BmuI	ACTGGG	3 cut(s)	6113, 6201, 6420
BoxI	GACNNNNGTC	1 cut(s)	6207
BpiI	GAAGAC	2 cut(s)	837, 3750
BplI	GAGNNNNNCTC	4 cut(s)	889, 921, 4465, 4497
BpmI	CTGGAG	9 cut(s)	837, 1503, 2802, 4145, 4353, 4890, 4968, 5271, 5765
Bpu10I	CCTNAGC	4 cut(s)	988, 2627, 3608, 3755
Bpu1102I	GCTNAGC	1 cut(s)	6570
Bpu14I	TTCGAA	1 cut(s)	3826
BpuEI	CTTGAG	6 cut(s)	658, 867, 1401, 3186, 3566, 5457
BpuMI	CCSGG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	4375
BsaAI	YACGTR	1 cut(s)	3350
BsaBI	GATNNNNATC	2 cut(s)	3363, 4194
BsaI	GGTCTC	2 cut(s)	1157, 2117
BsaWI	WCCGGW	2 cut(s)	3523, 6613
Bse21I	CCTNAGG	2 cut(s)	1311, 5098
Bse3DI	GCAATG	8 cut(s)	65, 354, 1199, 1980, 2262, 3401, 4562, 6347
Bse8I	GATNNNNATC	2 cut(s)	3363, 4194
BseCI	ATCGAT	1 cut(s)	4375
BseJI	GATNNNNATC	2 cut(s)	3363, 4194
BseMI	GCAATG	8 cut(s)	65, 354, 1199, 1980, 2262, 3401, 4562, 6347
BseRI	GAGGAG	6 cut(s)	870, 894, 1299, 4664, 4953, 5800
BseSI	GKGCMC	1 cut(s)	6103
BseYI	CCCAGC	3 cut(s)	597, 1881, 4457
BsgI	GTGCAG	4 cut(s)	2348, 2415, 2712, 4158
Bsh1236I	CGCG	1 cut(s)	3267
Bsh1285I	CGRYCG	1 cut(s)	419
BshNI	GGYRCC	2 cut(s)	1315, 3722
BshVI	ATCGAT	1 cut(s)	4375
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	4 cut(s)	732, 5949, 6103, 6327
BsiSI	CCGG	3 cut(s)	174, 3524, 6614
BslFI	GGGAC	3 cut(s)	5725, 6246, 6482
BsmAI	GTCTC	8 cut(s)	1157, 2117, 2922, 3154, 3542, 5405, 6166, 6500
BsmFI	GGGAC	3 cut(s)	5725, 6246, 6482
BsmI	GAATGC	2 cut(s)	1665, 2827
Bso31I	GGTCTC	2 cut(s)	1157, 2117
Bsp119I	TTCGAA	1 cut(s)	3826
Bsp1286I	GDGCHC	6 cut(s)	732, 2949, 4237, 5949, 6103, 6327
Bsp1407I	TGTACA	3 cut(s)	835, 3022, 4032
Bsp1720I	GCTNAGC	1 cut(s)	6570
BspDI	ATCGAT	1 cut(s)	4375
BspFNI	CGCG	1 cut(s)	3267
BspHI	TCATGA	4 cut(s)	2458, 3481, 4483, 5293
BspMAI	CTGCAG	2 cut(s)	2722, 5656
BspMI	ACCTGC	1 cut(s)	859
BspOI	GCTAGC	2 cut(s)	465, 2318
BspQI	GCTCTTC	2 cut(s)	114, 4482
BspT104I	TTCGAA	1 cut(s)	3826
BspT107I	GGYRCC	2 cut(s)	1315, 3722
BspTI	CTTAAG	1 cut(s)	2923
BspTNI	GGTCTC	2 cut(s)	1157, 2117
BsrBI	CCGCTC	1 cut(s)	5920
BsrDI	GCAATG	8 cut(s)	65, 354, 1199, 1980, 2262, 3401, 4562, 6347
BsrGI	TGTACA	3 cut(s)	835, 3022, 4032
BssSI	CACGAG	2 cut(s)	525, 5948
BssT1I	CCWWGG	8 cut(s)	136, 200, 1076, 1147, 1217, 3786, 4824, 6500
Bst2BI	CACGAG	2 cut(s)	525, 5948
BstAFI	CTTAAG	1 cut(s)	2923
BstAUI	TGTACA	3 cut(s)	835, 3022, 4032
BstBAI	YACGTR	1 cut(s)	3350
BstBI	TTCGAA	1 cut(s)	3826
BstFNI	CGCG	1 cut(s)	3267
BstH2I	RGCGCY	1 cut(s)	3382
BstHHI	GCGC	4 cut(s)	3269, 3381, 3638, 5913
BstMAI	GTCTC	8 cut(s)	1157, 2117, 2922, 3154, 3542, 5405, 6166, 6500
BstMCI	CGRYCG	1 cut(s)	419
BstNSI	RCATGY	6 cut(s)	415, 670, 1358, 1532, 2873, 5644
BstPAI	GACNNNNGTC	1 cut(s)	6207
BstSFI	CTRYAG	7 cut(s)	1463, 1722, 1794, 2718, 4080, 5652, 5671
BstSLI	GKGCMC	1 cut(s)	6103
BstUI	CGCG	1 cut(s)	3267
BstV2I	GAAGAC	2 cut(s)	837, 3750
BstX2I	RGATCY	8 cut(s)	1005, 2152, 3651, 3896, 3915, 3927, 5195, 6367
BstXI	CCANNNNNNTGG	2 cut(s)	769, 4244
BstYI	RGATCY	8 cut(s)	1005, 2152, 3651, 3896, 3915, 3927, 5195, 6367
Bsu15I	ATCGAT	1 cut(s)	4375
Bsu36I	CCTNAGG	2 cut(s)	1311, 5098
BsuTUI	ATCGAT	1 cut(s)	4375
BtsI	GCAGTG	1 cut(s)	4022
BtsIMutI	CAGTG	8 cut(s)	1549, 1584, 1922, 2404, 4022, 4338, 5527, 6075
BveI	ACCTGC	1 cut(s)	859
CaiI	CAGNNNCTG	6 cut(s)	947, 1351, 1901, 2726, 2743, 5660
CciI	TCATGA	4 cut(s)	2458, 3481, 4483, 5293
CfoI	GCGC	4 cut(s)	3269, 3381, 3638, 5913
ClaI	ATCGAT	1 cut(s)	4375
CseI	GACGC	2 cut(s)	2288, 2429
CsiI	ACCWGGT	1 cut(s)	6151
DraI	TTTAAA	1 cut(s)	3438
DraIII	CACNNNGTG	1 cut(s)	1298
DrdI	GACNNNNNNGTC	1 cut(s)	4178
DriI	GACNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	4178
Eam1105I	GACNNNNNGTC	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	5947
Eco130I	CCWWGG	8 cut(s)	136, 200, 1076, 1147, 1217, 3786, 4824, 6500
Eco147I	AGGCCT	3 cut(s)	2269, 2333, 5389
Eco24I	GRGCYC	3 cut(s)	2949, 4237, 5949
Eco31I	GGTCTC	2 cut(s)	1157, 2117
Eco32I	GATATC	3 cut(s)	3365, 4910, 6052
Eco53kI	GAGCTC	1 cut(s)	5947
Eco72I	CACGTG	1 cut(s)	3350
Eco81I	CCTNAGG	2 cut(s)	1311, 5098
EcoICRI	GAGCTC	1 cut(s)	5947
EcoO109I	RGGNCCY	3 cut(s)	386, 5804, 6233
EcoRI	GAATTC	1 cut(s)	440
EcoRV	GATATC	3 cut(s)	3365, 4910, 6052
EcoT14I	CCWWGG	8 cut(s)	136, 200, 1076, 1147, 1217, 3786, 4824, 6500
EcoT22I	ATGCAT	1 cut(s)	4920
EcoT38I	GRGCYC	3 cut(s)	2949, 4237, 5949
ErhI	CCWWGG	8 cut(s)	136, 200, 1076, 1147, 1217, 3786, 4824, 6500
FaqI	GGGAC	3 cut(s)	5725, 6246, 6482
FauI	CCCGC	2 cut(s)	1867, 3609
FauNDI	CATATG	3 cut(s)	2029, 5509, 6273
FbaI	TGATCA	5 cut(s)	2230, 4618, 4666, 5665, 5905
FblI	GTMKAC	2 cut(s)	4819, 5563
FriOI	GRGCYC	3 cut(s)	2949, 4237, 5949
GlaI	GCGC	4 cut(s)	3268, 3380, 3637, 5912
GsaI	CCCAGC	3 cut(s)	601, 1885, 4461
GsuI	CTGGAG	9 cut(s)	837, 1503, 2802, 4145, 4353, 4890, 4968, 5271, 5765
HaeII	RGCGCY	1 cut(s)	3382
HapII	CCGG	3 cut(s)	174, 3524, 6614
HgaI	GACGC	2 cut(s)	2288, 2429
HhaI	GCGC	4 cut(s)	3269, 3381, 3638, 5913
Hin6I	GCGC	4 cut(s)	3267, 3379, 3636, 5911
HinP1I	GCGC	4 cut(s)	3267, 3379, 3636, 5911
HincII	GTYRAC	4 cut(s)	268, 4291, 4820, 5564
HindII	GTYRAC	4 cut(s)	268, 4291, 4820, 5564
HindIII	AAGCTT	2 cut(s)	297, 2654
HpaII	CCGG	3 cut(s)	174, 3524, 6614
HphI	GGTGA	7 cut(s)	549, 963, 1330, 1412, 5321, 5501, 6441
Hpy99I	CGWCG	4 cut(s)	4497, 5110, 5246, 5568
HpyCH4IV	ACGT	3 cut(s)	1756, 2212, 3349
HpySE526I	ACGT	3 cut(s)	1756, 2212, 3349
HspAI	GCGC	4 cut(s)	3267, 3379, 3636, 5911
Ksp22I	TGATCA	5 cut(s)	2230, 4618, 4666, 5665, 5905
LguI	GCTCTTC	2 cut(s)	114, 4482
MabI	ACCWGGT	1 cut(s)	6151
MaeII	ACGT	3 cut(s)	1756, 2212, 3349
MbiI	CCGCTC	1 cut(s)	5920
MfeI	CAATTG	1 cut(s)	4389
MflI	RGATCY	8 cut(s)	1005, 2152, 3651, 3896, 3915, 3927, 5195, 6367
MhlI	GDGCHC	6 cut(s)	732, 2949, 4237, 5949, 6103, 6327
MlyI	GAGTC	6 cut(s)	265, 1547, 1952, 3573, 4495, 4787
MmeI	TCCRAC	7 cut(s)	1719, 2215, 5044, 5099, 5267, 5449, 6139
Mph1103I	ATGCAT	1 cut(s)	4920
MroXI	GAANNNNTTC	4 cut(s)	108, 1425, 2646, 3339
MslI	CAYNNNNRTG	7 cut(s)	185, 215, 1031, 4274, 4524, 5298, 6541
MspA1I	CMGCKG	7 cut(s)	778, 1351, 2675, 2723, 2771, 4142, 6437
MspCI	CTTAAG	1 cut(s)	2923
MspI	CCGG	3 cut(s)	174, 3524, 6614
MunI	CAATTG	1 cut(s)	4389
Mva1269I	GAATGC	2 cut(s)	1665, 2827
MvnI	CGCG	1 cut(s)	3267
NciI	CCSGG	1 cut(s)	174
NdeI	CATATG	3 cut(s)	2029, 5509, 6273
NheI	GCTAGC	2 cut(s)	461, 2314
NmuCI	GTSAC	9 cut(s)	555, 1049, 1290, 1560, 2417, 3235, 3429, 5300, 6124
NsiI	ATGCAT	1 cut(s)	4920
NspI	RCATGY	6 cut(s)	415, 670, 1358, 1532, 2873, 5644
NspV	TTCGAA	1 cut(s)	3826
OliI	CACNNNNGTG	1 cut(s)	6541
PaeI	GCATGC	1 cut(s)	670
PagI	TCATGA	4 cut(s)	2458, 3481, 4483, 5293
PceI	AGGCCT	3 cut(s)	2269, 2333, 5389
PciI	ACATGT	1 cut(s)	5640
PciSI	GCTCTTC	2 cut(s)	114, 4482
PcsI	WCGNNNNNNNCGW	1 cut(s)	2422
PctI	GAATGC	2 cut(s)	1665, 2827
PdmI	GAANNNNTTC	4 cut(s)	108, 1425, 2646, 3339
PflMI	CCANNNNNTGG	1 cut(s)	6158
PfoI	TCCNGGA	4 cut(s)	1480, 3918, 5886, 6361
PleI	GAGTC	6 cut(s)	264, 1546, 1952, 3573, 4495, 4786
PmaCI	CACGTG	1 cut(s)	3350
PmlI	CACGTG	1 cut(s)	3350
PpsI	GAGTC	6 cut(s)	264, 1546, 1952, 3573, 4495, 4786
Ppu21I	YACGTR	1 cut(s)	3350
PpuMI	RGGWCCY	2 cut(s)	5804, 6233
PscI	ACATGT	1 cut(s)	5640
PshAI	GACNNNNGTC	1 cut(s)	6207
Psp124BI	GAGCTC	1 cut(s)	5949
Psp5II	RGGWCCY	2 cut(s)	5804, 6233
PspCI	CACGTG	1 cut(s)	3350
PspFI	CCCAGC	3 cut(s)	597, 1881, 4457
PspPPI	RGGWCCY	2 cut(s)	5804, 6233
PstI	CTGCAG	2 cut(s)	2722, 5656
PstNI	CAGNNNCTG	6 cut(s)	947, 1351, 1901, 2726, 2743, 5660
PsuI	RGATCY	8 cut(s)	1005, 2152, 3651, 3896, 3915, 3927, 5195, 6367
PvuII	CAGCTG	7 cut(s)	778, 1351, 2675, 2723, 2771, 4142, 6437
RseI	CAYNNNNRTG	7 cut(s)	185, 215, 1031, 4274, 4524, 5298, 6541
SacI	GAGCTC	1 cut(s)	5949
SalI	GTCGAC	2 cut(s)	4818, 5562
SapI	GCTCTTC	2 cut(s)	114, 4482
SchI	GAGTC	6 cut(s)	265, 1547, 1952, 3573, 4495, 4787
SduI	GDGCHC	6 cut(s)	732, 2949, 4237, 5949, 6103, 6327
SexAI	ACCWGGT	1 cut(s)	6151
SfcI	CTRYAG	7 cut(s)	1463, 1722, 1794, 2718, 4080, 5652, 5671
SfuI	TTCGAA	1 cut(s)	3826
SmiMI	CAYNNNNRTG	7 cut(s)	185, 215, 1031, 4274, 4524, 5298, 6541
SmlI	CTYRAG	7 cut(s)	637, 882, 1416, 2923, 3201, 3545, 5472
SmoI	CTYRAG	7 cut(s)	637, 882, 1416, 2923, 3201, 3545, 5472
SpeI	ACTAGT	2 cut(s)	2576, 4691
SphI	GCATGC	1 cut(s)	670
SseBI	AGGCCT	3 cut(s)	2269, 2333, 5389
SspI	AATATT	8 cut(s)	736, 1492, 2991, 3591, 4414, 4768, 4877, 5990
SstI	GAGCTC	1 cut(s)	5949
StuI	AGGCCT	3 cut(s)	2269, 2333, 5389
StyI	CCWWGG	8 cut(s)	136, 200, 1076, 1147, 1217, 3786, 4824, 6500
TaiI	ACGT	3 cut(s)	1759, 2215, 3352
TaqII	GACCGA	1 cut(s)	561
TatI	WGTACW	5 cut(s)	835, 3022, 4032, 4694, 6031
TauI	GCSGC	2 cut(s)	2167, 3616
TscAI	CASTG	8 cut(s)	1549, 1584, 1929, 2411, 4022, 4345, 5527, 6082
TseFI	GTSAC	9 cut(s)	555, 1049, 1290, 1560, 2417, 3235, 3429, 5300, 6124
Tsp45I	GTSAC	9 cut(s)	555, 1049, 1290, 1560, 2417, 3235, 3429, 5300, 6124
TspGWI	ACGGA	5 cut(s)	2833, 2926, 3328, 3719, 6647
TspRI	CASTG	8 cut(s)	1549, 1584, 1929, 2411, 4022, 4345, 5527, 6082
Van91I	CCANNNNNTGG	1 cut(s)	6158
Vha464I	CTTAAG	1 cut(s)	2923
VneI	GTGCAC	1 cut(s)	6099
XapI	RAATTY	6 cut(s)	440, 1177, 1473, 5569, 5851, 6490
XbaI	TCTAGA	1 cut(s)	1450
XceI	RCATGY	6 cut(s)	415, 670, 1358, 1532, 2873, 5644
XmaJI	CCTAGG	3 cut(s)	200, 1076, 1217
XmiI	GTMKAC	2 cut(s)	4819, 5563
XmnI	GAANNNNTTC	4 cut(s)	108, 1425, 2646, 3339
Zsp2I	ATGCAT	1 cut(s)	4920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.