Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

47608861 .. 47650899

Gene Structure 42039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5406 bp

ATGCAATCGGGTGGAGGAGGAGGAGGTGGGCCCGGGCGGAACCCGGGGGTGGGGCCGGCGGGACGGGCAACGTCGAATTCGTCGGCTGCTTCGCCGTCCTCGTCCTCGTCGGCGGTGTCGACGCCCCACTTGGGGTTTGATTCGGTGCAGCAGCACCAGCAGCATCAGCAACAGCAGCACCAGCAGCAACAACAGCAGCAGCAATTGGGGTCTAGACAGCCATTGCAACAACAATTTTTAAGAAAGCCTGAAGGGAATGAAGCTCTTCTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCCGGCTCCACTCAAATGCCCCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCGGCAAATATGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTAGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAACAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATTCATGCCTGGAAATCTCTTGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCATTGGCTGCTCAGTTGCAAGCATTTGCAGTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGATGGGTGTACAATCGTCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAATAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGTTCGGGCAATCACAATGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAAGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCAGTCACAGGCTGTGGCATCAGTGAATGGACTGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAAGCAACTGTATCAACAGTTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCGGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAGTAATAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCAGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGTAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGACGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAAAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCGTCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAGCAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAAGGGAACTATGGACCACATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCCTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCGCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGAGGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATCCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATAAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCGGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCGAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAAACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCTATGCATGAAGAGGAAGGAGAAGGAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCGGAAAGAGTTGGAAATGACCTCATAGTAGAAGAAGCTGGTTCCTCAGGTTCGTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAAAGGCTGGTACGTATCTTATCTCTTTGTATTGATGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

1801

Amino Acids

201.94

Weight (kDa)

7.27

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	498 - 531	4.3e-08	QLQ
ResIII	PF04851	1026 - 1186	2e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1030 - 1334	3.8e-84	SNF2-related domain
DEAD	PF00270	1047 - 1190	1.7e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1355 - 1468	4.6e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4334
Acc36I	ACCTGC	1 cut(s)	1015
AccB1I	GGYRCC	2 cut(s)	1471, 3878
AccI	GTMKAC	2 cut(s)	119, 4975
AccII	CGCG	1 cut(s)	3423
AcsI	RAATTY	4 cut(s)	76, 596, 1333, 1629
AcuI	CTGAAG	6 cut(s)	270, 446, 732, 1850, 1869, 4082
AcvI	CACGTG	1 cut(s)	3506
AcyI	GRCGYC	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	1454
AflII	CTTAAG	1 cut(s)	3079
AhdI	GACNNNNNGTC	1 cut(s)	571
AhlI	ACTAGT	2 cut(s)	2732, 4847
AjnI	CCWGG	7 cut(s)	621, 781, 907, 1486, 1636, 2474, 4074
AjuI	GAANNNNNNNTTGG	8 cut(s)	482, 514, 2977, 3009, 3150, 3182, 4895, 4927
Alw21I	GWGCWC	1 cut(s)	888
Alw26I	GTCTC	5 cut(s)	1313, 2273, 3078, 3310, 3698
AlwNI	CAGNNNCTG	5 cut(s)	1103, 1507, 2057, 2882, 2899
Ama87I	CYCGRG	2 cut(s)	32, 43
AoxI	GGCC	7 cut(s)	29, 53, 542, 797, 2303, 2423, 2487
ApaI	GGGCCC	1 cut(s)	33
ApoI	RAATTY	4 cut(s)	76, 596, 1333, 1629
ArsI	GACNNNNNNTTYG	4 cut(s)	635, 667, 2189, 2221
Asp700I	GAANNNNTTC	4 cut(s)	264, 1581, 2802, 3495
AspA2I	CCTAGG	3 cut(s)	356, 1232, 1373
AspLEI	GCGC	3 cut(s)	3425, 3537, 3794
AsuC2I	CCSGG	5 cut(s)	33, 34, 44, 45, 330
AsuHPI	GGTGA	4 cut(s)	705, 1119, 1486, 1568
AsuII	TTCGAA	1 cut(s)	3982
AsuNHI	GCTAGC	2 cut(s)	617, 2470
AvaI	CYCGRG	2 cut(s)	32, 43
AvaII	GGWCC	9 cut(s)	700, 724, 1457, 1897, 2075, 2565, 3230, 3916, 5171
AvrII	CCTAGG	3 cut(s)	356, 1232, 1373
AxyI	CCTNAGG	2 cut(s)	1467, 5254
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	2 cut(s)	4071, 4083
BanI	GGYRCC	2 cut(s)	1471, 3878
BanII	GRGCYC	3 cut(s)	33, 3105, 4393
BauI	CACGAG	1 cut(s)	681
BbrPI	CACGTG	1 cut(s)	3506
BbsI	GAAGAC	2 cut(s)	993, 3906
Bbv12I	GWGCWC	1 cut(s)	888
BceAI	ACGGC	5 cut(s)	79, 749, 1225, 3548, 3739
BcgI	CGANNNNNNTGC	6 cut(s)	662, 696, 1367, 1401, 3972, 4006
BciT130I	CCWGG	7 cut(s)	623, 783, 909, 1488, 1638, 2476, 4076
BclI	TGATCA	3 cut(s)	2386, 4774, 4822
BcnI	CCSGG	5 cut(s)	33, 34, 44, 45, 330
BcoDI	GTCTC	5 cut(s)	1313, 2273, 3078, 3310, 3698
BcuI	ACTAGT	2 cut(s)	2732, 4847
BfmI	CTRYAG	5 cut(s)	1619, 1878, 1950, 2874, 4236
BfoI	RGCGCY	1 cut(s)	3538
BfrI	CTTAAG	1 cut(s)	3079
BfuAI	ACCTGC	1 cut(s)	1015
BglI	GCCNNNNNGGC	2 cut(s)	1140, 2422
BglII	AGATCT	2 cut(s)	2308, 3807
BlnI	CCTAGG	3 cut(s)	356, 1232, 1373
Bme18I	GGWCC	9 cut(s)	700, 724, 1457, 1897, 2075, 2565, 3230, 3916, 5171
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmeT110I	CYCGRG	2 cut(s)	32, 43
BmtI	GCTAGC	2 cut(s)	621, 2474
BpiI	GAAGAC	2 cut(s)	993, 3906
BplI	GAGNNNNNCTC	4 cut(s)	1045, 1077, 4621, 4653
BpmI	CTGGAG	7 cut(s)	993, 1659, 2958, 4301, 4509, 5046, 5124
Bpu10I	CCTNAGC	4 cut(s)	1144, 2783, 3764, 3911
Bpu14I	TTCGAA	1 cut(s)	3982
BpuEI	CTTGAG	5 cut(s)	814, 1023, 1557, 3342, 3722
BpuMI	CCSGG	5 cut(s)	33, 34, 44, 45, 330
Bsa29I	ATCGAT	1 cut(s)	4531
BsaAI	YACGTR	2 cut(s)	3506, 5375
BsaBI	GATNNNNATC	2 cut(s)	3519, 4350
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	2 cut(s)	1313, 2273
BsaWI	WCCGGW	1 cut(s)	3679
BsaXI	ACNNNNNCTCC	6 cut(s)	403, 433, 2931, 2961, 4482, 4512
Bse118I	RCCGGY	1 cut(s)	55
Bse21I	CCTNAGG	2 cut(s)	1467, 5254
Bse3DI	GCAATG	7 cut(s)	221, 510, 1355, 2136, 2418, 3557, 4718
Bse8I	GATNNNNATC	2 cut(s)	3519, 4350
BseBI	CCWGG	7 cut(s)	623, 783, 909, 1488, 1638, 2476, 4076
BseCI	ATCGAT	1 cut(s)	4531
BseJI	GATNNNNATC	2 cut(s)	3519, 4350
BseMI	GCAATG	7 cut(s)	221, 510, 1355, 2136, 2418, 3557, 4718
BseRI	GAGGAG	8 cut(s)	30, 33, 36, 1026, 1050, 1455, 4820, 5109
BseSI	GKGCMC	1 cut(s)	33
BseYI	CCCAGC	3 cut(s)	753, 2037, 4613
BsgI	GTGCAG	5 cut(s)	167, 2504, 2571, 2868, 4314
Bsh1236I	CGCG	1 cut(s)	3423
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	7 cut(s)	31, 55, 544, 799, 2305, 2425, 2489
BshNI	GGYRCC	2 cut(s)	1471, 3878
BshVI	ATCGAT	1 cut(s)	4531
BsiEI	CGRYCG	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	888
BsiHKCI	CYCGRG	2 cut(s)	32, 43
BsiSI	CCGG	5 cut(s)	33, 44, 56, 330, 3680
BslFI	GGGAC	1 cut(s)	75
BsmAI	GTCTC	5 cut(s)	1313, 2273, 3078, 3310, 3698
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	2 cut(s)	1821, 2983
BsnI	GGCC	7 cut(s)	31, 55, 544, 799, 2305, 2425, 2489
Bso31I	GGTCTC	2 cut(s)	1313, 2273
BsoBI	CYCGRG	2 cut(s)	32, 43
Bsp119I	TTCGAA	1 cut(s)	3982
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	4 cut(s)	33, 888, 3105, 4393
Bsp1407I	TGTACA	3 cut(s)	991, 3178, 4188
BspANI	GGCC	7 cut(s)	31, 55, 544, 799, 2305, 2425, 2489
BspDI	ATCGAT	1 cut(s)	4531
BspFNI	CGCG	1 cut(s)	3423
BspHI	TCATGA	3 cut(s)	2614, 3637, 4639
BspMAI	CTGCAG	1 cut(s)	2878
BspMI	ACCTGC	1 cut(s)	1015
BspOI	GCTAGC	2 cut(s)	621, 2474
BspQI	GCTCTTC	2 cut(s)	270, 4638
BspT104I	TTCGAA	1 cut(s)	3982
BspT107I	GGYRCC	2 cut(s)	1471, 3878
BspTI	CTTAAG	1 cut(s)	3079
BspTNI	GGTCTC	2 cut(s)	1313, 2273
BsrDI	GCAATG	7 cut(s)	221, 510, 1355, 2136, 2418, 3557, 4718
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	3 cut(s)	991, 3178, 4188
BssAI	RCCGGY	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	7 cut(s)	292, 356, 1232, 1303, 1373, 3942, 4980
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	7 cut(s)	623, 783, 909, 1488, 1638, 2476, 4076
Bst6I	CTCTTC	8 cut(s)	270, 2231, 2328, 2850, 3269, 4403, 4638, 5073
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	3079
BstAUI	TGTACA	3 cut(s)	991, 3178, 4188
BstBAI	YACGTR	2 cut(s)	3506, 5375
BstBI	TTCGAA	1 cut(s)	3982
BstFNI	CGCG	1 cut(s)	3423
BstH2I	RGCGCY	1 cut(s)	3538
BstHHI	GCGC	3 cut(s)	3425, 3537, 3794
BstMAI	GTCTC	5 cut(s)	1313, 2273, 3078, 3310, 3698
BstMCI	CGRYCG	1 cut(s)	575
BstNI	CCWGG	7 cut(s)	623, 783, 909, 1488, 1638, 2476, 4076
BstNSI	RCATGY	5 cut(s)	571, 826, 1514, 1688, 3029
BstSFI	CTRYAG	5 cut(s)	1619, 1878, 1950, 2874, 4236
BstSLI	GKGCMC	1 cut(s)	33
BstSNI	TACGTA	1 cut(s)	5375
BstUI	CGCG	1 cut(s)	3423
BstV2I	GAAGAC	2 cut(s)	993, 3906
BstX2I	RGATCY	7 cut(s)	1161, 2308, 3807, 4052, 4071, 4083, 5351
BstXI	CCANNNNNNTGG	2 cut(s)	925, 4400
BstYI	RGATCY	7 cut(s)	1161, 2308, 3807, 4052, 4071, 4083, 5351
Bsu15I	ATCGAT	1 cut(s)	4531
Bsu36I	CCTNAGG	2 cut(s)	1467, 5254
BsuRI	GGCC	7 cut(s)	31, 55, 544, 799, 2305, 2425, 2489
BsuTUI	ATCGAT	1 cut(s)	4531
BtsI	GCAGTG	1 cut(s)	4178
BtsIMutI	CAGTG	6 cut(s)	1705, 1740, 2078, 2560, 4178, 4494
BveI	ACCTGC	1 cut(s)	1015
CaiI	CAGNNNCTG	5 cut(s)	1103, 1507, 2057, 2882, 2899
CciI	TCATGA	3 cut(s)	2614, 3637, 4639
CfoI	GCGC	3 cut(s)	3425, 3537, 3794
Cfr10I	RCCGGY	1 cut(s)	55
Cfr9I	CCCGGG	2 cut(s)	32, 43
ClaI	ATCGAT	1 cut(s)	4531
CseI	GACGC	3 cut(s)	130, 2444, 2585
DraI	TTTAAA	1 cut(s)	3594
DraIII	CACNNNGTG	1 cut(s)	1454
DrdI	GACNNNNNNGTC	1 cut(s)	4334
DriI	GACNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	4334
Eam1104I	CTCTTC	8 cut(s)	270, 2231, 2328, 2850, 3269, 4403, 4638, 5073
Eam1105I	GACNNNNNGTC	1 cut(s)	571
EarI	CTCTTC	8 cut(s)	270, 2231, 2328, 2850, 3269, 4403, 4638, 5073
EciI	GGCGGA	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	5375
Eco130I	CCWWGG	7 cut(s)	292, 356, 1232, 1303, 1373, 3942, 4980
Eco147I	AGGCCT	2 cut(s)	2425, 2489
Eco24I	GRGCYC	3 cut(s)	33, 3105, 4393
Eco31I	GGTCTC	2 cut(s)	1313, 2273
Eco32I	GATATC	2 cut(s)	3521, 5066
Eco47I	GGWCC	9 cut(s)	700, 724, 1457, 1897, 2075, 2565, 3230, 3916, 5171
Eco57I	CTGAAG	6 cut(s)	270, 446, 732, 1850, 1869, 4082
Eco72I	CACGTG	1 cut(s)	3506
Eco81I	CCTNAGG	2 cut(s)	1467, 5254
Eco88I	CYCGRG	2 cut(s)	32, 43
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRI	GAATTC	2 cut(s)	76, 596
EcoRII	CCWGG	7 cut(s)	621, 781, 907, 1486, 1636, 2474, 4074
EcoRV	GATATC	2 cut(s)	3521, 5066
EcoT14I	CCWWGG	7 cut(s)	292, 356, 1232, 1303, 1373, 3942, 4980
EcoT22I	ATGCAT	1 cut(s)	5076
EcoT38I	GRGCYC	3 cut(s)	33, 3105, 4393
ErhI	CCWWGG	7 cut(s)	292, 356, 1232, 1303, 1373, 3942, 4980
FalI	AAGNNNNNCTT	8 cut(s)	444, 476, 1566, 1598, 2187, 2219, 3780, 3812
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	3 cut(s)	52, 2023, 3765
FauNDI	CATATG	1 cut(s)	2185
FbaI	TGATCA	3 cut(s)	2386, 4774, 4822
FblI	GTMKAC	2 cut(s)	119, 4975
FriOI	GRGCYC	3 cut(s)	33, 3105, 4393
GlaI	GCGC	3 cut(s)	3424, 3536, 3793
GsaI	CCCAGC	3 cut(s)	757, 2041, 4617
GsuI	CTGGAG	7 cut(s)	993, 1659, 2958, 4301, 4509, 5046, 5124
HaeII	RGCGCY	1 cut(s)	3538
HaeIII	GGCC	7 cut(s)	31, 55, 544, 799, 2305, 2425, 2489
HapII	CCGG	5 cut(s)	33, 44, 56, 330, 3680
HgaI	GACGC	3 cut(s)	130, 2444, 2585
HhaI	GCGC	3 cut(s)	3425, 3537, 3794
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	3 cut(s)	3423, 3535, 3792
HinP1I	GCGC	3 cut(s)	3423, 3535, 3792
HincII	GTYRAC	4 cut(s)	120, 424, 4447, 4976
HindII	GTYRAC	4 cut(s)	120, 424, 4447, 4976
HindIII	AAGCTT	2 cut(s)	453, 2810
HpaII	CCGG	5 cut(s)	33, 44, 56, 330, 3680
HphI	GGTGA	4 cut(s)	705, 1119, 1486, 1568
Hpy99I	CGWCG	6 cut(s)	76, 85, 112, 124, 4653, 5266
HpyCH4IV	ACGT	5 cut(s)	71, 1912, 2368, 3505, 5374
HpySE526I	ACGT	5 cut(s)	71, 1912, 2368, 3505, 5374
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	3 cut(s)	3423, 3535, 3792
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	3 cut(s)	2386, 4774, 4822
LguI	GCTCTTC	2 cut(s)	270, 4638
MaeII	ACGT	5 cut(s)	71, 1912, 2368, 3505, 5374
MfeI	CAATTG	2 cut(s)	203, 4545
MflI	RGATCY	7 cut(s)	1161, 2308, 3807, 4052, 4071, 4083, 5351
MhlI	GDGCHC	4 cut(s)	33, 888, 3105, 4393
MlyI	GAGTC	6 cut(s)	421, 1703, 2108, 3729, 4651, 4943
MmeI	TCCRAC	4 cut(s)	1875, 2371, 5200, 5255
Mph1103I	ATGCAT	1 cut(s)	5076
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	4 cut(s)	264, 1581, 2802, 3495
MslI	CAYNNNNRTG	5 cut(s)	341, 371, 1187, 4430, 4680
MspA1I	CMGCKG	6 cut(s)	934, 1507, 2831, 2879, 2927, 4298
MspCI	CTTAAG	1 cut(s)	3079
MspI	CCGG	5 cut(s)	33, 44, 56, 330, 3680
MunI	CAATTG	2 cut(s)	203, 4545
Mva1269I	GAATGC	2 cut(s)	1821, 2983
MvaI	CCWGG	7 cut(s)	623, 783, 909, 1488, 1638, 2476, 4076
MvnI	CGCG	1 cut(s)	3423
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	5 cut(s)	33, 34, 44, 45, 330
NdeI	CATATG	1 cut(s)	2185
NgoMIV	GCCGGC	1 cut(s)	55
NheI	GCTAGC	2 cut(s)	617, 2470
NmuCI	GTSAC	7 cut(s)	711, 1205, 1446, 1716, 2573, 3391, 3585
NsiI	ATGCAT	1 cut(s)	5076
NspI	RCATGY	5 cut(s)	571, 826, 1514, 1688, 3029
NspV	TTCGAA	1 cut(s)	3982
PaeI	GCATGC	1 cut(s)	826
PagI	TCATGA	3 cut(s)	2614, 3637, 4639
PceI	AGGCCT	2 cut(s)	2425, 2489
PciSI	GCTCTTC	2 cut(s)	270, 4638
PcsI	WCGNNNNNNNCGW	4 cut(s)	77, 98, 116, 2578
PctI	GAATGC	2 cut(s)	1821, 2983
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	4 cut(s)	264, 1581, 2802, 3495
PfoI	TCCNGGA	2 cut(s)	1636, 4074
PleI	GAGTC	6 cut(s)	420, 1702, 2108, 3729, 4651, 4942
PmaCI	CACGTG	1 cut(s)	3506
PmlI	CACGTG	1 cut(s)	3506
PpsI	GAGTC	6 cut(s)	420, 1702, 2108, 3729, 4651, 4942
Ppu21I	YACGTR	2 cut(s)	3506, 5375
Psp6I	CCWGG	7 cut(s)	621, 781, 907, 1486, 1636, 2474, 4074
PspCI	CACGTG	1 cut(s)	3506
PspFI	CCCAGC	3 cut(s)	753, 2037, 4613
PspGI	CCWGG	7 cut(s)	621, 781, 907, 1486, 1636, 2474, 4074
PspOMI	GGGCCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	2878
PstNI	CAGNNNCTG	5 cut(s)	1103, 1507, 2057, 2882, 2899
PsuI	RGATCY	7 cut(s)	1161, 2308, 3807, 4052, 4071, 4083, 5351
PvuII	CAGCTG	6 cut(s)	934, 1507, 2831, 2879, 2927, 4298
RseI	CAYNNNNRTG	5 cut(s)	341, 371, 1187, 4430, 4680
SalI	GTCGAC	2 cut(s)	118, 4974
SapI	GCTCTTC	2 cut(s)	270, 4638
SchI	GAGTC	6 cut(s)	421, 1703, 2108, 3729, 4651, 4943
SduI	GDGCHC	4 cut(s)	33, 888, 3105, 4393
SfcI	CTRYAG	5 cut(s)	1619, 1878, 1950, 2874, 4236
SfuI	TTCGAA	1 cut(s)	3982
SinI	GGWCC	9 cut(s)	700, 724, 1457, 1897, 2075, 2565, 3230, 3916, 5171
SmaI	CCCGGG	2 cut(s)	34, 45
SmiMI	CAYNNNNRTG	5 cut(s)	341, 371, 1187, 4430, 4680
SmlI	CTYRAG	6 cut(s)	793, 1038, 1572, 3079, 3357, 3701
SmoI	CTYRAG	6 cut(s)	793, 1038, 1572, 3079, 3357, 3701
SnaBI	TACGTA	1 cut(s)	5375
SpeI	ACTAGT	2 cut(s)	2732, 4847
SphI	GCATGC	1 cut(s)	826
SrfI	GCCCGGGC	1 cut(s)	34
SseBI	AGGCCT	2 cut(s)	2425, 2489
SspI	AATATT	7 cut(s)	892, 1648, 3147, 3747, 4570, 4924, 5033
StuI	AGGCCT	2 cut(s)	2425, 2489
StyI	CCWWGG	7 cut(s)	292, 356, 1232, 1303, 1373, 3942, 4980
TaiI	ACGT	5 cut(s)	74, 1915, 2371, 3508, 5377
TaqII	GACCGA	1 cut(s)	717
TatI	WGTACW	4 cut(s)	991, 3178, 4188, 4850
TauI	GCSGC	2 cut(s)	2323, 3772
TscAI	CASTG	6 cut(s)	1705, 1740, 2085, 2567, 4178, 4501
TseFI	GTSAC	7 cut(s)	711, 1205, 1446, 1716, 2573, 3391, 3585
Tsp45I	GTSAC	7 cut(s)	711, 1205, 1446, 1716, 2573, 3391, 3585
TspGWI	ACGGA	4 cut(s)	2989, 3082, 3484, 3875
TspMI	CCCGGG	2 cut(s)	32, 43
TspRI	CASTG	6 cut(s)	1705, 1740, 2085, 2567, 4178, 4501
Vha464I	CTTAAG	1 cut(s)	3079
VpaK11BI	GGWCC	9 cut(s)	700, 724, 1457, 1897, 2075, 2565, 3230, 3916, 5171
XapI	RAATTY	4 cut(s)	76, 596, 1333, 1629
XbaI	TCTAGA	2 cut(s)	212, 1606
XceI	RCATGY	5 cut(s)	571, 826, 1514, 1688, 3029
XmaI	CCCGGG	2 cut(s)	32, 43
XmaJI	CCTAGG	3 cut(s)	356, 1232, 1373
XmiI	GTMKAC	2 cut(s)	119, 4975
XmnI	GAANNNNTTC	4 cut(s)	264, 1581, 2802, 3495
Zsp2I	ATGCAT	1 cut(s)	5076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.