Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

51007899 .. 51019187

Gene Structure 11289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6177 bp

ATGCAATCGGGTGGAGGAGGAGGAGGTGGGCCCGGGCGGAACCCGGGAGTGGGGCCGGCGGGACGGGCAACGTCGAATTCGTCGGCTGCTTCGCCGTCGTCGTCGTCGTCGGCGGTGTCGACACCGCACTTGGGGTTTGATTCGGTGCAGCAGCACCAGCAACATCAGCAGCAACAGCAGCAGCAGCAATTGGGGTCTAGACAGCCATTGCAACAACAATTTTTAAGAAAGCCTGAAGGGAATGAAGCTCTTCTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCTGGCTCCACTCAAATGCCTCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCTGCAAATTTGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTGGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAACAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATATATGCCTGGAAATCTCATGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCACTGGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGAGCAACATGGGTGTACAATCGTCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCCAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAGTAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGCTCGGGCAATCACAGTGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAGGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCATTCACAGGCTGTGGCATCAGTGAATGGACCGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCAGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAATAGTAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCGGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCATCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAACAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCGCATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGCGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGACGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGACCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGTCCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAGACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATACCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGAAAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGAAATGACCTCATCGTAGAAGAAGCTGGTTCCTCAGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGACAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTCATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACGGTGGCTCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2058

Amino Acids

231.17

Weight (kDa)

7.66

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	495 - 528	5e-08	QLQ
ResIII	PF04851	1023 - 1183	1.8e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1027 - 1331	2.7e-84	SNF2-related domain
DEAD	PF00270	1044 - 1187	1.6e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1352 - 1465	5.5e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4325
Acc36I	ACCTGC	1 cut(s)	1006
AccB1I	GGYRCC	2 cut(s)	1462, 3869
AccBSI	CCGCTC	1 cut(s)	6067
AccI	GTMKAC	3 cut(s)	119, 4966, 5710
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	7 cut(s)	76, 565, 581, 1324, 1620, 5716, 5998
AcvI	CACGTG	1 cut(s)	3497
AdeI	CACNNNGTG	1 cut(s)	1445
AflII	CTTAAG	1 cut(s)	3070
AflIII	ACRYGT	1 cut(s)	5787
AhdI	GACNNNNNGTC	1 cut(s)	556
AhlI	ACTAGT	2 cut(s)	2723, 4838
AjnI	CCWGG	8 cut(s)	313, 606, 766, 892, 1477, 1627, 2465, 4065
Alw21I	GWGCWC	2 cut(s)	873, 6096
Alw26I	GTCTC	7 cut(s)	1304, 2264, 3069, 3301, 3689, 4940, 5552
AlwNI	CAGNNNCTG	7 cut(s)	314, 1094, 1498, 2048, 2873, 2890, 5807
Ama87I	CYCGRG	3 cut(s)	32, 43, 1417
AoxI	GGCC	9 cut(s)	29, 53, 527, 604, 782, 2294, 2414, 2478, 5534
ApaI	GGGCCC	1 cut(s)	33
ApoI	RAATTY	7 cut(s)	76, 565, 581, 1324, 1620, 5716, 5998
ArsI	GACNNNNNNTTYG	4 cut(s)	620, 652, 2180, 2212
AseI	ATTAAT	1 cut(s)	1794
Asp700I	GAANNNNTTC	4 cut(s)	249, 1572, 2793, 3486
AspA2I	CCTAGG	3 cut(s)	341, 1223, 1364
AspLEI	GCGC	4 cut(s)	3362, 3528, 3785, 6060
AsuC2I	CCSGG	4 cut(s)	33, 34, 44, 45
AsuHPI	GGTGA	6 cut(s)	690, 1110, 1477, 1559, 5468, 5648
AsuII	TTCGAA	1 cut(s)	3973
AsuNHI	GCTAGC	1 cut(s)	2461
AvaI	CYCGRG	3 cut(s)	32, 43, 1417
AvrII	CCTAGG	3 cut(s)	341, 1223, 1364
AxyI	CCTNAGG	3 cut(s)	1458, 1563, 5245
BaeGI	GKGCMC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	2 cut(s)	4062, 4074
BanI	GGYRCC	2 cut(s)	1462, 3869
BanII	GRGCYC	5 cut(s)	33, 1418, 3096, 4384, 6096
BauI	CACGAG	2 cut(s)	666, 6095
BbrPI	CACGTG	1 cut(s)	3497
BbsI	GAAGAC	2 cut(s)	984, 3897
Bbv12I	GWGCWC	2 cut(s)	873, 6096
BceAI	ACGGC	5 cut(s)	79, 734, 1216, 3539, 3730
BcgI	CGANNNNNNTGC	6 cut(s)	647, 681, 1358, 1392, 3963, 3997
BciT130I	CCWGG	8 cut(s)	315, 608, 768, 894, 1479, 1629, 2467, 4067
BciVI	GTATCC	1 cut(s)	5048
BclI	TGATCA	5 cut(s)	2377, 4765, 4813, 5812, 6052
BcnI	CCSGG	4 cut(s)	33, 34, 44, 45
BcoDI	GTCTC	7 cut(s)	1304, 2264, 3069, 3301, 3689, 4940, 5552
BcuI	ACTAGT	2 cut(s)	2723, 4838
BfmI	CTRYAG	7 cut(s)	1610, 1869, 1941, 2865, 4227, 5799, 5818
BfoI	RGCGCY	1 cut(s)	3529
BfrI	CTTAAG	1 cut(s)	3070
BfuAI	ACCTGC	1 cut(s)	1006
BfuI	GTATCC	1 cut(s)	5048
BglI	GCCNNNNNGGC	2 cut(s)	1131, 2413
BglII	AGATCT	2 cut(s)	2299, 3798
BlnI	CCTAGG	3 cut(s)	341, 1223, 1364
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmeT110I	CYCGRG	3 cut(s)	32, 43, 1417
BmtI	GCTAGC	1 cut(s)	2465
BpiI	GAAGAC	2 cut(s)	984, 3897
BplI	GAGNNNNNCTC	4 cut(s)	1036, 1068, 4612, 4644
BpmI	CTGGAG	9 cut(s)	984, 1650, 2949, 4292, 4500, 5037, 5115, 5418, 5912
Bpu10I	CCTNAGC	4 cut(s)	1135, 2774, 3755, 3902
Bpu14I	TTCGAA	1 cut(s)	3973
BpuEI	CTTGAG	5 cut(s)	887, 1014, 3333, 3713, 5604
BpuMI	CCSGG	4 cut(s)	33, 34, 44, 45
BsaAI	YACGTR	1 cut(s)	3497
BsaBI	GATNNNNATC	2 cut(s)	3510, 4341
BsaI	GGTCTC	2 cut(s)	1304, 2264
BsaWI	WCCGGW	1 cut(s)	3670
BsaXI	ACNNNNNCTCC	8 cut(s)	388, 418, 2922, 2952, 4473, 4503, 6083, 6113
Bse118I	RCCGGY	1 cut(s)	55
Bse21I	CCTNAGG	3 cut(s)	1458, 1563, 5245
Bse3DI	GCAATG	7 cut(s)	206, 495, 1346, 2127, 2409, 3548, 4709
Bse8I	GATNNNNATC	2 cut(s)	3510, 4341
BseBI	CCWGG	8 cut(s)	315, 608, 768, 894, 1479, 1629, 2467, 4067
BseJI	GATNNNNATC	2 cut(s)	3510, 4341
BseMI	GCAATG	7 cut(s)	206, 495, 1346, 2127, 2409, 3548, 4709
BseRI	GAGGAG	8 cut(s)	30, 33, 36, 1017, 1041, 1446, 4811, 5947
BseSI	GKGCMC	1 cut(s)	33
BseYI	CCCAGC	3 cut(s)	738, 2028, 4604
BsgI	GTGCAG	5 cut(s)	167, 2495, 2562, 2859, 4305
BshFI	GGCC	9 cut(s)	31, 55, 529, 606, 784, 2296, 2416, 2480, 5536
BshNI	GGYRCC	2 cut(s)	1462, 3869
BsiHKAI	GWGCWC	2 cut(s)	873, 6096
BsiHKCI	CYCGRG	3 cut(s)	32, 43, 1417
BsiSI	CCGG	4 cut(s)	33, 44, 56, 3671
BslFI	GGGAC	2 cut(s)	75, 5872
BsmAI	GTCTC	7 cut(s)	1304, 2264, 3069, 3301, 3689, 4940, 5552
BsmFI	GGGAC	2 cut(s)	75, 5872
BsmI	GAATGC	2 cut(s)	1812, 2974
BsnI	GGCC	9 cut(s)	31, 55, 529, 606, 784, 2296, 2416, 2480, 5536
Bso31I	GGTCTC	2 cut(s)	1304, 2264
BsoBI	CYCGRG	3 cut(s)	32, 43, 1417
Bsp119I	TTCGAA	1 cut(s)	3973
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	6 cut(s)	33, 873, 1418, 3096, 4384, 6096
Bsp1407I	TGTACA	3 cut(s)	982, 3169, 4179
BspANI	GGCC	9 cut(s)	31, 55, 529, 606, 784, 2296, 2416, 2480, 5536
BspHI	TCATGA	5 cut(s)	777, 2605, 3628, 4630, 5440
BspMAI	CTGCAG	2 cut(s)	2869, 5803
BspMI	ACCTGC	1 cut(s)	1006
BspOI	GCTAGC	1 cut(s)	2465
BspQI	GCTCTTC	2 cut(s)	255, 4629
BspT104I	TTCGAA	1 cut(s)	3973
BspT107I	GGYRCC	2 cut(s)	1462, 3869
BspTI	CTTAAG	1 cut(s)	3070
BspTNI	GGTCTC	2 cut(s)	1304, 2264
BsrBI	CCGCTC	1 cut(s)	6067
BsrDI	GCAATG	7 cut(s)	206, 495, 1346, 2127, 2409, 3548, 4709
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	3 cut(s)	982, 3169, 4179
BssAI	RCCGGY	1 cut(s)	55
BssSI	CACGAG	2 cut(s)	666, 6095
BssT1I	CCWWGG	7 cut(s)	277, 341, 1223, 1294, 1364, 3933, 4971
Bst2BI	CACGAG	2 cut(s)	666, 6095
Bst2UI	CCWGG	8 cut(s)	315, 608, 768, 894, 1479, 1629, 2467, 4067
Bst6I	CTCTTC	9 cut(s)	255, 2222, 2319, 2841, 3260, 4394, 4629, 5064, 5535
BstAFI	CTTAAG	1 cut(s)	3070
BstAUI	TGTACA	3 cut(s)	982, 3169, 4179
BstBAI	YACGTR	1 cut(s)	3497
BstBI	TTCGAA	1 cut(s)	3973
BstH2I	RGCGCY	1 cut(s)	3529
BstHHI	GCGC	4 cut(s)	3362, 3528, 3785, 6060
BstMAI	GTCTC	7 cut(s)	1304, 2264, 3069, 3301, 3689, 4940, 5552
BstNI	CCWGG	8 cut(s)	315, 608, 768, 894, 1479, 1629, 2467, 4067
BstNSI	RCATGY	6 cut(s)	556, 811, 1505, 1679, 3020, 5791
BstSFI	CTRYAG	7 cut(s)	1610, 1869, 1941, 2865, 4227, 5799, 5818
BstSLI	GKGCMC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	984, 3897
BstX2I	RGATCY	7 cut(s)	1152, 2299, 3798, 4043, 4062, 4074, 5342
BstXI	CCANNNNNNTGG	2 cut(s)	910, 4391
BstYI	RGATCY	7 cut(s)	1152, 2299, 3798, 4043, 4062, 4074, 5342
Bsu36I	CCTNAGG	3 cut(s)	1458, 1563, 5245
BsuI	GTATCC	1 cut(s)	5048
BsuRI	GGCC	9 cut(s)	31, 55, 529, 606, 784, 2296, 2416, 2480, 5536
BtsI	GCAGTG	1 cut(s)	4169
BtsIMutI	CAGTG	9 cut(s)	836, 1435, 1696, 1731, 2069, 2551, 4169, 4485, 5674
BveI	ACCTGC	1 cut(s)	1006
CaiI	CAGNNNCTG	7 cut(s)	314, 1094, 1498, 2048, 2873, 2890, 5807
CciI	TCATGA	5 cut(s)	777, 2605, 3628, 4630, 5440
CfoI	GCGC	4 cut(s)	3362, 3528, 3785, 6060
Cfr10I	RCCGGY	1 cut(s)	55
Cfr9I	CCCGGG	2 cut(s)	32, 43
CseI	GACGC	1 cut(s)	2435
DraI	TTTAAA	1 cut(s)	3585
DraIII	CACNNNGTG	1 cut(s)	1445
DrdI	GACNNNNNNGTC	1 cut(s)	4325
DriI	GACNNNNNGTC	1 cut(s)	556
DseDI	GACNNNNNNGTC	1 cut(s)	4325
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	9 cut(s)	255, 2222, 2319, 2841, 3260, 4394, 4629, 5064, 5535
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	9 cut(s)	255, 2222, 2319, 2841, 3260, 4394, 4629, 5064, 5535
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	6094
Eco130I	CCWWGG	7 cut(s)	277, 341, 1223, 1294, 1364, 3933, 4971
Eco147I	AGGCCT	3 cut(s)	2416, 2480, 5536
Eco24I	GRGCYC	5 cut(s)	33, 1418, 3096, 4384, 6096
Eco31I	GGTCTC	2 cut(s)	1304, 2264
Eco32I	GATATC	1 cut(s)	3512
Eco53kI	GAGCTC	1 cut(s)	6094
Eco72I	CACGTG	1 cut(s)	3497
Eco81I	CCTNAGG	3 cut(s)	1458, 1563, 5245
Eco88I	CYCGRG	3 cut(s)	32, 43, 1417
EcoICRI	GAGCTC	1 cut(s)	6094
EcoO109I	RGGNCCY	2 cut(s)	527, 5951
EcoRI	GAATTC	2 cut(s)	76, 581
EcoRII	CCWGG	8 cut(s)	313, 606, 766, 892, 1477, 1627, 2465, 4065
EcoRV	GATATC	1 cut(s)	3512
EcoT14I	CCWWGG	7 cut(s)	277, 341, 1223, 1294, 1364, 3933, 4971
EcoT22I	ATGCAT	1 cut(s)	5067
EcoT38I	GRGCYC	5 cut(s)	33, 1418, 3096, 4384, 6096
ErhI	CCWWGG	7 cut(s)	277, 341, 1223, 1294, 1364, 3933, 4971
FalI	AAGNNNNNCTT	8 cut(s)	429, 461, 2178, 2210, 3771, 3803, 5845, 5877
FaqI	GGGAC	2 cut(s)	75, 5872
FauI	CCCGC	3 cut(s)	52, 2014, 3756
FauNDI	CATATG	2 cut(s)	2176, 5656
FbaI	TGATCA	5 cut(s)	2377, 4765, 4813, 5812, 6052
FblI	GTMKAC	3 cut(s)	119, 4966, 5710
FriOI	GRGCYC	5 cut(s)	33, 1418, 3096, 4384, 6096
GlaI	GCGC	4 cut(s)	3361, 3527, 3784, 6059
GsaI	CCCAGC	3 cut(s)	742, 2032, 4608
GsuI	CTGGAG	9 cut(s)	984, 1650, 2949, 4292, 4500, 5037, 5115, 5418, 5912
HaeII	RGCGCY	1 cut(s)	3529
HaeIII	GGCC	9 cut(s)	31, 55, 529, 606, 784, 2296, 2416, 2480, 5536
HapII	CCGG	4 cut(s)	33, 44, 56, 3671
HgaI	GACGC	1 cut(s)	2435
HhaI	GCGC	4 cut(s)	3362, 3528, 3785, 6060
Hin6I	GCGC	4 cut(s)	3360, 3526, 3783, 6058
HinP1I	GCGC	4 cut(s)	3360, 3526, 3783, 6058
HincII	GTYRAC	6 cut(s)	120, 409, 2995, 4438, 4967, 5711
HindII	GTYRAC	6 cut(s)	120, 409, 2995, 4438, 4967, 5711
HindIII	AAGCTT	2 cut(s)	438, 2801
HpaII	CCGG	4 cut(s)	33, 44, 56, 3671
HphI	GGTGA	6 cut(s)	690, 1110, 1477, 1559, 5468, 5648
HpyCH4IV	ACGT	5 cut(s)	71, 1903, 2359, 3496, 4882
HpySE526I	ACGT	5 cut(s)	71, 1903, 2359, 3496, 4882
HspAI	GCGC	4 cut(s)	3360, 3526, 3783, 6058
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	5 cut(s)	2377, 4765, 4813, 5812, 6052
LguI	GCTCTTC	2 cut(s)	255, 4629
MaeII	ACGT	5 cut(s)	71, 1903, 2359, 3496, 4882
MbiI	CCGCTC	1 cut(s)	6067
MfeI	CAATTG	2 cut(s)	188, 4536
MflI	RGATCY	7 cut(s)	1152, 2299, 3798, 4043, 4062, 4074, 5342
MhlI	GDGCHC	6 cut(s)	33, 873, 1418, 3096, 4384, 6096
MlsI	TGGCCA	1 cut(s)	606
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	7 cut(s)	406, 1694, 2099, 3720, 4642, 4934, 6093
MmeI	TCCRAC	5 cut(s)	2362, 5191, 5246, 5414, 5596
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	5067
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	4 cut(s)	249, 1572, 2793, 3486
MscI	TGGCCA	1 cut(s)	606
MslI	CAYNNNNRTG	6 cut(s)	326, 356, 1178, 4421, 4671, 5445
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	7 cut(s)	602, 919, 1498, 2822, 2870, 2918, 4289
MspCI	CTTAAG	1 cut(s)	3070
MspI	CCGG	4 cut(s)	33, 44, 56, 3671
MunI	CAATTG	2 cut(s)	188, 4536
Mva1269I	GAATGC	2 cut(s)	1812, 2974
MvaI	CCWGG	8 cut(s)	315, 608, 768, 894, 1479, 1629, 2467, 4067
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	4 cut(s)	33, 34, 44, 45
NdeI	CATATG	2 cut(s)	2176, 5656
NgoMIV	GCCGGC	1 cut(s)	55
NheI	GCTAGC	1 cut(s)	2461
NmuCI	GTSAC	6 cut(s)	696, 1196, 1437, 3382, 3576, 5447
NsiI	ATGCAT	1 cut(s)	5067
NspI	RCATGY	6 cut(s)	556, 811, 1505, 1679, 3020, 5791
NspV	TTCGAA	1 cut(s)	3973
PaeI	GCATGC	1 cut(s)	811
PagI	TCATGA	5 cut(s)	777, 2605, 3628, 4630, 5440
PceI	AGGCCT	3 cut(s)	2416, 2480, 5536
PciI	ACATGT	1 cut(s)	5787
PciSI	GCTCTTC	2 cut(s)	255, 4629
PcsI	WCGNNNNNNNCGW	5 cut(s)	77, 98, 104, 116, 2569
PctI	GAATGC	2 cut(s)	1812, 2974
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	4 cut(s)	249, 1572, 2793, 3486
PfoI	TCCNGGA	2 cut(s)	1627, 4065
PleI	GAGTC	7 cut(s)	405, 1693, 2099, 3720, 4642, 4933, 6092
PmaCI	CACGTG	1 cut(s)	3497
PmlI	CACGTG	1 cut(s)	3497
PpsI	GAGTC	7 cut(s)	405, 1693, 2099, 3720, 4642, 4933, 6092
Ppu21I	YACGTR	1 cut(s)	3497
PpuMI	RGGWCCY	1 cut(s)	5951
PscI	ACATGT	1 cut(s)	5787
PshBI	ATTAAT	1 cut(s)	1794
Psp124BI	GAGCTC	1 cut(s)	6096
Psp5II	RGGWCCY	1 cut(s)	5951
Psp6I	CCWGG	8 cut(s)	313, 606, 766, 892, 1477, 1627, 2465, 4065
PspCI	CACGTG	1 cut(s)	3497
PspFI	CCCAGC	3 cut(s)	738, 2028, 4604
PspGI	CCWGG	8 cut(s)	313, 606, 766, 892, 1477, 1627, 2465, 4065
PspOMI	GGGCCC	1 cut(s)	29
PspPPI	RGGWCCY	1 cut(s)	5951
PstI	CTGCAG	2 cut(s)	2869, 5803
PstNI	CAGNNNCTG	7 cut(s)	314, 1094, 1498, 2048, 2873, 2890, 5807
PsuI	RGATCY	7 cut(s)	1152, 2299, 3798, 4043, 4062, 4074, 5342
PvuII	CAGCTG	7 cut(s)	602, 919, 1498, 2822, 2870, 2918, 4289
RseI	CAYNNNNRTG	6 cut(s)	326, 356, 1178, 4421, 4671, 5445
SacI	GAGCTC	1 cut(s)	6096
SalI	GTCGAC	3 cut(s)	118, 4965, 5709
SapI	GCTCTTC	2 cut(s)	255, 4629
SchI	GAGTC	7 cut(s)	406, 1694, 2099, 3720, 4642, 4934, 6093
SduI	GDGCHC	6 cut(s)	33, 873, 1418, 3096, 4384, 6096
SfcI	CTRYAG	7 cut(s)	1610, 1869, 1941, 2865, 4227, 5799, 5818
SfuI	TTCGAA	1 cut(s)	3973
SmaI	CCCGGG	2 cut(s)	34, 45
SmiMI	CAYNNNNRTG	6 cut(s)	326, 356, 1178, 4421, 4671, 5445
SmlI	CTYRAG	6 cut(s)	866, 1029, 3070, 3348, 3692, 5619
SmoI	CTYRAG	6 cut(s)	866, 1029, 3070, 3348, 3692, 5619
SpeI	ACTAGT	2 cut(s)	2723, 4838
SphI	GCATGC	1 cut(s)	811
SrfI	GCCCGGGC	1 cut(s)	34
SseBI	AGGCCT	3 cut(s)	2416, 2480, 5536
SspI	AATATT	8 cut(s)	877, 1639, 3138, 3738, 4561, 4915, 5024, 6137
SstI	GAGCTC	1 cut(s)	6096
StuI	AGGCCT	3 cut(s)	2416, 2480, 5536
StyI	CCWWGG	7 cut(s)	277, 341, 1223, 1294, 1364, 3933, 4971
TaiI	ACGT	5 cut(s)	74, 1906, 2362, 3499, 4885
TaqII	GACCGA	3 cut(s)	702, 1750, 4536
TatI	WGTACW	4 cut(s)	982, 3169, 4179, 4841
TauI	GCSGC	2 cut(s)	2314, 3763
TscAI	CASTG	9 cut(s)	843, 1435, 1696, 1731, 2076, 2558, 4169, 4492, 5674
TseFI	GTSAC	6 cut(s)	696, 1196, 1437, 3382, 3576, 5447
Tsp45I	GTSAC	6 cut(s)	696, 1196, 1437, 3382, 3576, 5447
TspGWI	ACGGA	3 cut(s)	2980, 3073, 3475
TspMI	CCCGGG	2 cut(s)	32, 43
TspRI	CASTG	9 cut(s)	843, 1435, 1696, 1731, 2076, 2558, 4169, 4492, 5674
Vha464I	CTTAAG	1 cut(s)	3070
VspI	ATTAAT	1 cut(s)	1794
XapI	RAATTY	7 cut(s)	76, 565, 581, 1324, 1620, 5716, 5998
XbaI	TCTAGA	2 cut(s)	197, 1597
XceI	RCATGY	6 cut(s)	556, 811, 1505, 1679, 3020, 5791
XmaI	CCCGGG	2 cut(s)	32, 43
XmaJI	CCTAGG	3 cut(s)	341, 1223, 1364
XmiI	GTMKAC	3 cut(s)	119, 4966, 5710
XmnI	GAANNNNTTC	4 cut(s)	249, 1572, 2793, 3486
Zsp2I	ATGCAT	1 cut(s)	5067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.