Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Reverse (-)

18515309 .. 18525095

Gene Structure 9787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6780 bp

ATGGGTCGGTGGGGATTTTTGGAATTGTTAGGTTTTTGGTTTGGGTTGTGGGTTTACCTAATTGGGAGTGTTCTTGGTTTTTGGGTGGAAGTGAAACGCATATGTGTTGTGGTTTTACTTGTTGGTTACTGTGGTTTTCCCAATTTTGGAGTTCTGGATGAGTTTGATCTGGTAGAGATAATGCCATTGCAACAACAATTTTTAAGAAAGCCTGAAGGGAATGAAGCTCTTCTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCTGGCTCCACTCAAATGCCTCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGCTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCGGCAAATTTGAAAATGCAGGAATTCAATTCTATGCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAGCAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCCGTAGGACAATTCATGCCTGGAAATCTCATGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCATTGGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAACTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGAGCAACATGGGTGTACAATCATCTTCTGCTCCAGTTTCAAAGCAGCAGGTTACTTCCCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGTTCAAGTAGTGGGTTCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCAGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTATTGATGGGGGTTCGGGCAATCACAATGTTCAGTCACAAGGTGGACCAGCTTCTCAGGTTTCACAACAACGCCCTGGATTTACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAAGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCATTCACAGGCTGTGGCATCAGTGAATGGACCGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTGTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCAGACCATGAAGTTGAACGTAGTAACCAAAAAGATCCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAATAATAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCTGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTACGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCATCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCGTCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAACAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTCCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCACATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCACACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGCGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGACGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCTAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGCCCTGATTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACAGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGATGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAATGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGCTTGGAGTCGAGTGAAGTGGGTTCTGAGACTGAAAGAAAGAGGGGTCGACCCAAAGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGGAATGACCTCATAGTAGAAGAAGCTGGTTCCTCGGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCCCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTCGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCACGACCGTGATGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATGTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGATAAGGAAGGTCCTCAAATAGTACCTTTACTTACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTGATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACGAACTGAAGCCAGGAAAGTACACGATCTTTTCTTTGATATCTTGAAAATTGCCTTTGCTGACACTGACTTTCGAGAAGCCAGAAGTGCACTCTCTTTTACCAGCCCAGTTGTGACCACCAATGCTCTATCCCCAAGACCAGGTGTTGGACAAAGCAAGAGACACAGATTGATAAATGAGGTGGAACCTGACCCCAGTCCTCTACAGAAGCCACTACGGGGACCTATTATCAGTAGCGAAGAAACAAGGGTAAGAAGCCATATGCCCCAGAAGGAATCAAGGCTTGGGAGTGGAAGTGGTAATAGTCGGGAGCACTATCAGCCAGAGGATTCTCCATTGCTTGCTCATCCAGGAGATCTGGTTATTTGCAAGAAGAAGAGAAAAGACAGGGAAAAGACTGGGGTAAAGACTAGGAATGGACCAGCTGGCCCTGTTTCACCCCCCAGCATGGGTCGCGGTATTAGAAGTCCTGGGCCAAATTCAGTCCCAAGGGAGACAAGATCAACCCAACAGGCATCACATTCACAAGGGTGGGCCAACCAGCCTTCGCAGCCTGCTCAGCCCGCAAACAGGGGTACGGGGTCTGTTGGTTGGGCAAATCCGGTAAAGAGGTTAAGGACGGATTCTGGAAAGAGAAGGCCAAGCCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2260

Amino Acids

254.26

Weight (kDa)

8.54

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	484 - 517	5.5e-08	QLQ
ResIII	PF04851	1012 - 1172	2e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1016 - 1320	3e-84	SNF2-related domain
DEAD	PF00270	1033 - 1176	1.8e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1341 - 1454	6.1e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4292
Acc36I	ACCTGC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	3836
AccB7I	CCANNNNNTGG	1 cut(s)	6272
AccBSI	CCGCTC	1 cut(s)	6034
AccI	GTMKAC	2 cut(s)	4933, 5677
AccII	CGCG	1 cut(s)	6582
AcsI	RAATTY	7 cut(s)	544, 560, 1291, 1587, 5683, 5965, 6604
AcvI	CACGTG	1 cut(s)	3464
AdeI	CACNNNGTG	1 cut(s)	1412
AflII	CTTAAG	1 cut(s)	3037
AflIII	ACRYGT	1 cut(s)	5754
AhdI	GACNNNNNGTC	1 cut(s)	535
AhlI	ACTAGT	2 cut(s)	2690, 4805
AleI	CACNNNNGTG	2 cut(s)	5412, 6655
Alw21I	GWGCWC	4 cut(s)	840, 6063, 6217, 6441
Alw26I	GTCTC	9 cut(s)	1271, 2231, 3036, 3268, 3656, 4907, 5519, 6280, 6614
Alw44I	GTGCAC	1 cut(s)	6213
AlwNI	CAGNNNCTG	7 cut(s)	293, 1061, 1465, 2015, 2840, 2857, 5774
Ama87I	CYCGRG	1 cut(s)	5212
AoxI	GGCC	9 cut(s)	506, 749, 2261, 2381, 5501, 6553, 6599, 6660, 6764
ApaLI	GTGCAC	1 cut(s)	6213
ApoI	RAATTY	7 cut(s)	544, 560, 1291, 1587, 5683, 5965, 6604
ArsI	GACNNNNNNTTYG	4 cut(s)	587, 619, 2147, 2179
AseI	ATTAAT	1 cut(s)	1761
Asp700I	GAANNNNTTC	4 cut(s)	228, 1539, 2760, 3453
AspA2I	CCTAGG	3 cut(s)	320, 1190, 1331
AspLEI	GCGC	4 cut(s)	3329, 3495, 3752, 6027
AsuHPI	GGTGA	6 cut(s)	657, 1077, 1526, 5435, 5615, 6555
AsuII	TTCGAA	1 cut(s)	3940
AsuNHI	GCTAGC	1 cut(s)	2428
AvaI	CYCGRG	1 cut(s)	5212
AvrII	CCTAGG	3 cut(s)	320, 1190, 1331
BaeGI	GKGCMC	1 cut(s)	6217
BamHI	GGATCC	2 cut(s)	4029, 4041
BanI	GGYRCC	1 cut(s)	3836
BanII	GRGCYC	3 cut(s)	3063, 4351, 6063
BauI	CACGAG	2 cut(s)	633, 6062
BbrPI	CACGTG	1 cut(s)	3464
BbsI	GAAGAC	1 cut(s)	3864
Bbv12I	GWGCWC	4 cut(s)	840, 6063, 6217, 6441
BceAI	ACGGC	4 cut(s)	701, 1183, 3506, 3697
BcgI	CGANNNNNNTGC	6 cut(s)	614, 648, 1325, 1359, 3930, 3964
BclI	TGATCA	5 cut(s)	2344, 4732, 4780, 5779, 6019
BcoDI	GTCTC	9 cut(s)	1271, 2231, 3036, 3268, 3656, 4907, 5519, 6280, 6614
BcuI	ACTAGT	2 cut(s)	2690, 4805
BfmI	CTRYAG	8 cut(s)	1577, 1836, 1908, 2832, 4194, 5766, 5785, 6329
BfoI	RGCGCY	1 cut(s)	3496
BfrI	CTTAAG	1 cut(s)	3037
BfuAI	ACCTGC	1 cut(s)	973
BglI	GCCNNNNNGGC	2 cut(s)	1098, 2380
BglII	AGATCT	3 cut(s)	2266, 3765, 6481
BlnI	CCTAGG	3 cut(s)	320, 1190, 1331
BlpI	GCTNAGC	1 cut(s)	6684
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	5212
BmrI	ACTGGG	3 cut(s)	6227, 6315, 6534
BmtI	GCTAGC	1 cut(s)	2432
BmuI	ACTGGG	3 cut(s)	6227, 6315, 6534
BoxI	GACNNNNGTC	1 cut(s)	6321
BpiI	GAAGAC	1 cut(s)	3864
BplI	GAGNNNNNCTC	4 cut(s)	1003, 1035, 4579, 4611
BpmI	CTGGAG	9 cut(s)	951, 1617, 2916, 4259, 4467, 5004, 5082, 5385, 5879
Bpu10I	CCTNAGC	4 cut(s)	1102, 2741, 3722, 3869
Bpu1102I	GCTNAGC	1 cut(s)	6684
Bpu14I	TTCGAA	1 cut(s)	3940
BpuEI	CTTGAG	6 cut(s)	854, 981, 1515, 3300, 3680, 5571
Bsa29I	ATCGAT	1 cut(s)	4489
BsaAI	YACGTR	1 cut(s)	3464
BsaBI	GATNNNNATC	2 cut(s)	3477, 4308
BsaI	GGTCTC	2 cut(s)	1271, 2231
BsaWI	WCCGGW	2 cut(s)	3637, 6727
Bse3DI	GCAATG	8 cut(s)	185, 474, 1313, 2094, 2376, 3515, 4676, 6461
Bse8I	GATNNNNATC	2 cut(s)	3477, 4308
BseCI	ATCGAT	1 cut(s)	4489
BseJI	GATNNNNATC	2 cut(s)	3477, 4308
BseMI	GCAATG	8 cut(s)	185, 474, 1313, 2094, 2376, 3515, 4676, 6461
BseRI	GAGGAG	3 cut(s)	1008, 4778, 5914
BseSI	GKGCMC	1 cut(s)	6217
BseYI	CCCAGC	4 cut(s)	705, 1995, 4571, 6569
BsgI	GTGCAG	4 cut(s)	2462, 2529, 2826, 4272
Bsh1236I	CGCG	1 cut(s)	6582
Bsh1285I	CGRYCG	2 cut(s)	539, 5413
BshFI	GGCC	9 cut(s)	508, 751, 2263, 2383, 5503, 6555, 6601, 6662, 6766
BshNI	GGYRCC	1 cut(s)	3836
BshVI	ATCGAT	1 cut(s)	4489
BsiEI	CGRYCG	2 cut(s)	539, 5413
BsiHKAI	GWGCWC	4 cut(s)	840, 6063, 6217, 6441
BsiHKCI	CYCGRG	1 cut(s)	5212
BsiSI	CCGG	2 cut(s)	3638, 6728
BslFI	GGGAC	3 cut(s)	5839, 6360, 6596
BsmAI	GTCTC	9 cut(s)	1271, 2231, 3036, 3268, 3656, 4907, 5519, 6280, 6614
BsmFI	GGGAC	3 cut(s)	5839, 6360, 6596
BsmI	GAATGC	2 cut(s)	1779, 2941
BsnI	GGCC	9 cut(s)	508, 751, 2263, 2383, 5503, 6555, 6601, 6662, 6766
Bso31I	GGTCTC	2 cut(s)	1271, 2231
BsoBI	CYCGRG	1 cut(s)	5212
Bsp119I	TTCGAA	1 cut(s)	3940
Bsp1286I	GDGCHC	6 cut(s)	840, 3063, 4351, 6063, 6217, 6441
Bsp1407I	TGTACA	3 cut(s)	949, 3136, 4146
Bsp1720I	GCTNAGC	1 cut(s)	6684
BspANI	GGCC	9 cut(s)	508, 751, 2263, 2383, 5503, 6555, 6601, 6662, 6766
BspDI	ATCGAT	1 cut(s)	4489
BspFNI	CGCG	1 cut(s)	6582
BspHI	TCATGA	4 cut(s)	744, 2572, 3595, 4597
BspMAI	CTGCAG	2 cut(s)	2836, 5770
BspMI	ACCTGC	1 cut(s)	973
BspOI	GCTAGC	1 cut(s)	2432
BspQI	GCTCTTC	2 cut(s)	234, 4596
BspT104I	TTCGAA	1 cut(s)	3940
BspT107I	GGYRCC	1 cut(s)	3836
BspTI	CTTAAG	1 cut(s)	3037
BspTNI	GGTCTC	2 cut(s)	1271, 2231
BsrBI	CCGCTC	1 cut(s)	6034
BsrDI	GCAATG	8 cut(s)	185, 474, 1313, 2094, 2376, 3515, 4676, 6461
BsrGI	TGTACA	3 cut(s)	949, 3136, 4146
BssSI	CACGAG	2 cut(s)	633, 6062
BssT1I	CCWWGG	7 cut(s)	256, 320, 1190, 1261, 1331, 3900, 6614
Bst2BI	CACGAG	2 cut(s)	633, 6062
BstAFI	CTTAAG	1 cut(s)	3037
BstAUI	TGTACA	3 cut(s)	949, 3136, 4146
BstBAI	YACGTR	1 cut(s)	3464
BstBI	TTCGAA	1 cut(s)	3940
BstFNI	CGCG	1 cut(s)	6582
BstH2I	RGCGCY	1 cut(s)	3496
BstHHI	GCGC	4 cut(s)	3329, 3495, 3752, 6027
BstMAI	GTCTC	9 cut(s)	1271, 2231, 3036, 3268, 3656, 4907, 5519, 6280, 6614
BstMCI	CGRYCG	2 cut(s)	539, 5413
BstNSI	RCATGY	6 cut(s)	535, 778, 1472, 1646, 2987, 5758
BstPAI	GACNNNNGTC	1 cut(s)	6321
BstSFI	CTRYAG	8 cut(s)	1577, 1836, 1908, 2832, 4194, 5766, 5785, 6329
BstSLI	GKGCMC	1 cut(s)	6217
BstUI	CGCG	1 cut(s)	6582
BstV2I	GAAGAC	1 cut(s)	3864
BstX2I	RGATCY	8 cut(s)	1885, 2266, 3765, 4010, 4029, 4041, 5309, 6481
BstXI	CCANNNNNNTGG	3 cut(s)	877, 4358, 5276
BstYI	RGATCY	8 cut(s)	1885, 2266, 3765, 4010, 4029, 4041, 5309, 6481
Bsu15I	ATCGAT	1 cut(s)	4489
BsuRI	GGCC	9 cut(s)	508, 751, 2263, 2383, 5503, 6555, 6601, 6662, 6766
BsuTUI	ATCGAT	1 cut(s)	4489
BtsI	GCAGTG	1 cut(s)	4136
BtsIMutI	CAGTG	8 cut(s)	1663, 1698, 2036, 2518, 4136, 4452, 5641, 6189
BveI	ACCTGC	1 cut(s)	973
CaiI	CAGNNNCTG	7 cut(s)	293, 1061, 1465, 2015, 2840, 2857, 5774
CciI	TCATGA	4 cut(s)	744, 2572, 3595, 4597
CfoI	GCGC	4 cut(s)	3329, 3495, 3752, 6027
ClaI	ATCGAT	1 cut(s)	4489
CseI	GACGC	1 cut(s)	2402
CsiI	ACCWGGT	1 cut(s)	6265
DraI	TTTAAA	1 cut(s)	3552
DraIII	CACNNNGTG	1 cut(s)	1412
DrdI	GACNNNNNNGTC	1 cut(s)	4292
DriI	GACNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	4292
Eam1105I	GACNNNNNGTC	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	6061
Eco130I	CCWWGG	7 cut(s)	256, 320, 1190, 1261, 1331, 3900, 6614
Eco147I	AGGCCT	2 cut(s)	2383, 5503
Eco24I	GRGCYC	3 cut(s)	3063, 4351, 6063
Eco31I	GGTCTC	2 cut(s)	1271, 2231
Eco32I	GATATC	3 cut(s)	3479, 5024, 6166
Eco53kI	GAGCTC	1 cut(s)	6061
Eco72I	CACGTG	1 cut(s)	3464
Eco88I	CYCGRG	1 cut(s)	5212
EcoICRI	GAGCTC	1 cut(s)	6061
EcoO109I	RGGNCCY	3 cut(s)	506, 5918, 6347
EcoRI	GAATTC	1 cut(s)	560
EcoRV	GATATC	3 cut(s)	3479, 5024, 6166
EcoT14I	CCWWGG	7 cut(s)	256, 320, 1190, 1261, 1331, 3900, 6614
EcoT22I	ATGCAT	1 cut(s)	5034
EcoT38I	GRGCYC	3 cut(s)	3063, 4351, 6063
ErhI	CCWWGG	7 cut(s)	256, 320, 1190, 1261, 1331, 3900, 6614
FaqI	GGGAC	3 cut(s)	5839, 6360, 6596
FauI	CCCGC	3 cut(s)	1981, 3723, 6697
FauNDI	CATATG	4 cut(s)	101, 2143, 5623, 6387
FbaI	TGATCA	5 cut(s)	2344, 4732, 4780, 5779, 6019
FblI	GTMKAC	2 cut(s)	4933, 5677
FriOI	GRGCYC	3 cut(s)	3063, 4351, 6063
GlaI	GCGC	4 cut(s)	3328, 3494, 3751, 6026
GsaI	CCCAGC	4 cut(s)	709, 1999, 4575, 6573
GsuI	CTGGAG	9 cut(s)	951, 1617, 2916, 4259, 4467, 5004, 5082, 5385, 5879
HaeII	RGCGCY	1 cut(s)	3496
HaeIII	GGCC	9 cut(s)	508, 751, 2263, 2383, 5503, 6555, 6601, 6662, 6766
HapII	CCGG	2 cut(s)	3638, 6728
HgaI	GACGC	1 cut(s)	2402
HhaI	GCGC	4 cut(s)	3329, 3495, 3752, 6027
Hin6I	GCGC	4 cut(s)	3327, 3493, 3750, 6025
HinP1I	GCGC	4 cut(s)	3327, 3493, 3750, 6025
HincII	GTYRAC	5 cut(s)	388, 2962, 4405, 4934, 5678
HindII	GTYRAC	5 cut(s)	388, 2962, 4405, 4934, 5678
HindIII	AAGCTT	2 cut(s)	417, 2768
HpaII	CCGG	2 cut(s)	3638, 6728
HphI	GGTGA	6 cut(s)	657, 1077, 1526, 5435, 5615, 6555
Hpy99I	CGWCG	3 cut(s)	4611, 5360, 5682
HpyCH4IV	ACGT	4 cut(s)	1870, 2326, 2401, 3463
HpySE526I	ACGT	4 cut(s)	1870, 2326, 2401, 3463
HspAI	GCGC	4 cut(s)	3327, 3493, 3750, 6025
Ksp22I	TGATCA	5 cut(s)	2344, 4732, 4780, 5779, 6019
LguI	GCTCTTC	2 cut(s)	234, 4596
MabI	ACCWGGT	1 cut(s)	6265
MaeII	ACGT	4 cut(s)	1870, 2326, 2401, 3463
MbiI	CCGCTC	1 cut(s)	6034
MfeI	CAATTG	1 cut(s)	4503
MflI	RGATCY	8 cut(s)	1885, 2266, 3765, 4010, 4029, 4041, 5309, 6481
MhlI	GDGCHC	6 cut(s)	840, 3063, 4351, 6063, 6217, 6441
MlyI	GAGTC	6 cut(s)	385, 1661, 2066, 3687, 4609, 4901
MmeI	TCCRAC	5 cut(s)	2329, 5213, 5381, 5563, 6253
Mph1103I	ATGCAT	1 cut(s)	5034
MroXI	GAANNNNTTC	4 cut(s)	228, 1539, 2760, 3453
MslI	CAYNNNNRTG	7 cut(s)	305, 335, 1145, 4388, 4638, 5412, 6655
MspA1I	CMGCKG	7 cut(s)	886, 1465, 2789, 2837, 2885, 4256, 6551
MspCI	CTTAAG	1 cut(s)	3037
MspI	CCGG	2 cut(s)	3638, 6728
MunI	CAATTG	1 cut(s)	4503
Mva1269I	GAATGC	2 cut(s)	1779, 2941
MvnI	CGCG	1 cut(s)	6582
NdeI	CATATG	4 cut(s)	101, 2143, 5623, 6387
NheI	GCTAGC	1 cut(s)	2428
NmuCI	GTSAC	6 cut(s)	663, 1163, 1404, 3349, 3543, 6238
NsiI	ATGCAT	1 cut(s)	5034
NspI	RCATGY	6 cut(s)	535, 778, 1472, 1646, 2987, 5758
NspV	TTCGAA	1 cut(s)	3940
OliI	CACNNNNGTG	2 cut(s)	5412, 6655
PaeI	GCATGC	1 cut(s)	778
PagI	TCATGA	4 cut(s)	744, 2572, 3595, 4597
PceI	AGGCCT	2 cut(s)	2383, 5503
PciI	ACATGT	1 cut(s)	5754
PciSI	GCTCTTC	2 cut(s)	234, 4596
PcsI	WCGNNNNNNNCGW	2 cut(s)	2536, 5219
PctI	GAATGC	2 cut(s)	1779, 2941
PdmI	GAANNNNTTC	4 cut(s)	228, 1539, 2760, 3453
PflMI	CCANNNNNTGG	1 cut(s)	6272
PfoI	TCCNGGA	3 cut(s)	1594, 4032, 6475
PleI	GAGTC	6 cut(s)	384, 1660, 2066, 3687, 4609, 4900
PmaCI	CACGTG	1 cut(s)	3464
PmlI	CACGTG	1 cut(s)	3464
PpsI	GAGTC	6 cut(s)	384, 1660, 2066, 3687, 4609, 4900
Ppu21I	YACGTR	1 cut(s)	3464
PpuMI	RGGWCCY	2 cut(s)	5918, 6347
PscI	ACATGT	1 cut(s)	5754
PshAI	GACNNNNGTC	1 cut(s)	6321
PshBI	ATTAAT	1 cut(s)	1761
Psp124BI	GAGCTC	1 cut(s)	6063
Psp5II	RGGWCCY	2 cut(s)	5918, 6347
PspCI	CACGTG	1 cut(s)	3464
PspFI	CCCAGC	4 cut(s)	705, 1995, 4571, 6569
PspPPI	RGGWCCY	2 cut(s)	5918, 6347
PstI	CTGCAG	2 cut(s)	2836, 5770
PstNI	CAGNNNCTG	7 cut(s)	293, 1061, 1465, 2015, 2840, 2857, 5774
PsuI	RGATCY	8 cut(s)	1885, 2266, 3765, 4010, 4029, 4041, 5309, 6481
PvuII	CAGCTG	7 cut(s)	886, 1465, 2789, 2837, 2885, 4256, 6551
RseI	CAYNNNNRTG	7 cut(s)	305, 335, 1145, 4388, 4638, 5412, 6655
SacI	GAGCTC	1 cut(s)	6063
SalI	GTCGAC	2 cut(s)	4932, 5676
SapI	GCTCTTC	2 cut(s)	234, 4596
SchI	GAGTC	6 cut(s)	385, 1661, 2066, 3687, 4609, 4901
SduI	GDGCHC	6 cut(s)	840, 3063, 4351, 6063, 6217, 6441
SexAI	ACCWGGT	1 cut(s)	6265
SfcI	CTRYAG	8 cut(s)	1577, 1836, 1908, 2832, 4194, 5766, 5785, 6329
SfuI	TTCGAA	1 cut(s)	3940
SmiMI	CAYNNNNRTG	7 cut(s)	305, 335, 1145, 4388, 4638, 5412, 6655
SmlI	CTYRAG	7 cut(s)	833, 996, 1530, 3037, 3315, 3659, 5586
SmoI	CTYRAG	7 cut(s)	833, 996, 1530, 3037, 3315, 3659, 5586
SpeI	ACTAGT	2 cut(s)	2690, 4805
SphI	GCATGC	1 cut(s)	778
SseBI	AGGCCT	2 cut(s)	2383, 5503
SspI	AATATT	8 cut(s)	844, 1606, 3105, 3705, 4528, 4882, 4991, 6104
SstI	GAGCTC	1 cut(s)	6063
StuI	AGGCCT	2 cut(s)	2383, 5503
StyI	CCWWGG	7 cut(s)	256, 320, 1190, 1261, 1331, 3900, 6614
TaiI	ACGT	4 cut(s)	1873, 2329, 2404, 3466
TaqII	GACCGA	2 cut(s)	669, 1717
TatI	WGTACW	5 cut(s)	949, 3136, 4146, 4808, 6145
TauI	GCSGC	2 cut(s)	2281, 3730
TscAI	CASTG	8 cut(s)	1663, 1698, 2043, 2525, 4136, 4459, 5641, 6196
TseFI	GTSAC	6 cut(s)	663, 1163, 1404, 3349, 3543, 6238
Tsp45I	GTSAC	6 cut(s)	663, 1163, 1404, 3349, 3543, 6238
TspGWI	ACGGA	4 cut(s)	2947, 3040, 3442, 6761
TspRI	CASTG	8 cut(s)	1663, 1698, 2043, 2525, 4136, 4459, 5641, 6196
Van91I	CCANNNNNTGG	1 cut(s)	6272
Vha464I	CTTAAG	1 cut(s)	3037
VneI	GTGCAC	1 cut(s)	6213
VspI	ATTAAT	1 cut(s)	1761
XapI	RAATTY	7 cut(s)	544, 560, 1291, 1587, 5683, 5965, 6604
XbaI	TCTAGA	1 cut(s)	1564
XceI	RCATGY	6 cut(s)	535, 778, 1472, 1646, 2987, 5758
XmaJI	CCTAGG	3 cut(s)	320, 1190, 1331
XmiI	GTMKAC	2 cut(s)	4933, 5677
XmnI	GAANNNNTTC	4 cut(s)	228, 1539, 2760, 3453
Zsp2I	ATGCAT	1 cut(s)	5034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.